Wall clock time and date at job start Tue Mar 31 2020 07:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38219 * 119.98670 * 2 1 4 4 C 1.38438 * 119.97342 * 179.97438 * 3 2 1 5 5 F 1.35102 * 120.02434 * 179.97438 * 4 3 2 6 6 C 1.38476 * 119.95031 * 359.97438 * 4 3 2 7 7 C 1.38177 * 119.97377 * 0.02562 * 6 4 3 8 8 C 1.38218 * 119.98776 * 179.72028 * 2 1 3 9 9 C 1.50704 * 119.97678 * 0.02562 * 8 2 1 10 10 H 1.09008 * 109.46695 * 39.99565 * 9 8 2 11 11 C 1.52995 * 109.46954 * 280.00240 * 9 8 2 12 12 N 1.46900 * 109.47300 * 159.99580 * 9 8 2 13 13 C 1.46896 * 110.99718 * 204.99945 * 12 9 8 14 14 C 1.53004 * 109.47002 * 180.02562 * 13 12 9 15 15 C 1.53000 * 109.47020 * 300.00389 * 14 13 12 16 16 C 1.53004 * 109.47057 * 59.99992 * 14 13 12 17 17 C 1.52996 * 109.47120 * 180.02562 * 14 13 12 18 18 C 1.50699 * 109.47061 * 180.02562 * 17 14 13 19 19 H 1.08001 * 120.00189 * 359.97438 * 18 17 14 20 20 C 1.37880 * 120.00016 * 180.02562 * 18 17 14 21 21 N 1.31513 * 120.00117 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99896 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47074 * 89.99833 * 22 20 18 24 24 H 1.48499 * 109.47322 * 209.99807 * 22 20 18 25 25 H 1.48503 * 109.47470 * 329.99990 * 22 20 18 26 26 H 1.09002 * 109.47152 * 90.00027 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.00128 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.00109 * 1 2 3 29 29 H 1.08000 * 120.01433 * 359.95519 * 3 2 1 30 30 H 1.07998 * 120.01613 * 179.97438 * 6 4 3 31 31 H 1.08000 * 119.99015 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47533 * 59.99359 * 11 9 8 33 33 H 1.09005 * 109.47338 * 179.97438 * 11 9 8 34 34 H 1.09008 * 109.46868 * 299.99219 * 11 9 8 35 35 H 1.00898 * 111.00010 * 328.95364 * 12 9 8 36 36 H 1.09000 * 109.47739 * 300.00508 * 13 12 9 37 37 H 1.09004 * 109.47559 * 60.00369 * 13 12 9 38 38 H 1.08992 * 109.47419 * 59.99913 * 15 14 13 39 39 H 1.09000 * 109.46771 * 180.02562 * 15 14 13 40 40 H 1.09004 * 109.46857 * 299.99311 * 15 14 13 41 41 H 1.09005 * 109.46924 * 60.00093 * 16 14 13 42 42 H 1.09000 * 109.47119 * 179.97438 * 16 14 13 43 43 H 1.08997 * 109.46936 * 300.00366 * 16 14 13 44 44 H 1.09004 * 109.47373 * 299.99579 * 17 14 13 45 45 H 1.08995 * 109.47557 * 59.99925 * 17 14 13 46 46 H 0.97003 * 119.99910 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1972 0.0000 4 6 3.5822 1.1969 0.0005 5 9 4.2585 2.3664 0.0000 6 6 4.2733 -0.0031 0.0016 7 6 3.5805 -1.1987 0.0016 8 6 2.1979 -1.1971 0.0058 9 6 1.4435 -2.5018 0.0116 10 1 0.5803 -2.4253 -0.6496 11 6 0.9708 -2.8112 1.4334 12 7 2.3253 -3.5793 -0.4568 13 6 1.5461 -4.6877 -1.0246 14 6 2.4967 -5.7884 -1.4998 15 6 3.4356 -5.2250 -2.5684 16 6 3.3198 -6.2980 -0.3150 17 6 1.6852 -6.9425 -2.0917 18 6 2.6214 -8.0269 -2.5593 19 1 3.6885 -7.9049 -2.4459 20 6 2.1157 -9.1743 -3.1327 21 7 0.8164 -9.3227 -3.2711 22 14 3.2763 -10.5182 -3.7128 23 1 3.5180 -11.4761 -2.6041 24 1 2.6684 -11.2350 -4.8625 25 1 4.5652 -9.9119 -4.1329 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 0.8900 0.5138 28 1 -0.3633 -0.8900 0.5139 29 1 1.6579 2.1325 -0.0007 30 1 5.3533 -0.0046 0.0016 31 1 4.1192 -2.1348 0.0020 32 1 0.3166 -2.0117 1.7810 33 1 0.4248 -3.7547 1.4376 34 1 1.8341 -2.8878 2.0947 35 1 2.9983 -3.2318 -1.1233 36 1 0.8774 -5.0893 -0.2632 37 1 0.9593 -4.3246 -1.8684 38 1 4.0137 -4.4027 -2.1471 39 1 4.1125 -6.0093 -2.9072 40 1 2.8492 -4.8620 -3.4125 41 1 2.6508 -6.6993 0.4463 42 1 3.9966 -7.0825 -0.6535 43 1 3.8978 -5.4756 0.1063 44 1 1.0160 -7.3440 -1.3307 45 1 1.0991 -6.5792 -2.9358 46 1 0.4606 -10.1301 -3.6742 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815626494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:10 Heat of formation + Delta-G solvation = -44.939132 kcal Electronic energy + Delta-G solvation = -23679.348616 eV Core-core repulsion = 20289.305260 eV Total energy + Delta-G solvation = -3390.043357 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.04981 -40.00782 -37.64500 -35.22601 -33.15953 -32.38243 -30.58185 -28.96611 -27.40347 -26.87369 -26.33883 -25.25468 -23.56943 -22.66336 -21.56629 -20.35469 -18.04976 -17.36468 -16.78793 -16.33289 -16.03670 -15.78434 -15.16802 -14.69593 -14.49618 -14.22201 -13.91797 -13.59854 -13.46345 -13.32363 -13.18765 -12.77025 -12.63170 -12.35167 -12.25180 -11.99548 -11.98003 -11.63646 -11.47571 -11.15074 -11.05589 -10.91950 -10.77073 -10.71287 -10.50389 -10.25302 -10.12414 -9.68906 -9.11021 -9.03056 -8.84968 -8.63771 -8.31937 -8.15815 -5.96571 -3.96617 0.95308 1.03952 3.33195 3.36080 3.39872 3.42446 4.05409 4.26854 4.48457 4.52179 4.56833 4.67874 4.93528 5.11698 5.22947 5.32404 5.38066 5.39348 5.41000 5.49383 5.66854 5.72247 5.77265 5.83632 5.89464 5.94862 5.95636 5.98801 6.12664 6.25374 6.27539 6.30848 6.39872 6.50915 6.64969 6.72554 6.78777 6.82483 7.20321 7.21404 7.25603 7.38088 7.62254 7.70235 7.85097 8.03748 8.48111 9.08800 9.66266 11.15098 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.027918 B = 0.003021 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.686219 B = 9266.966609 C = 9772.826542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.053 4.053 3 C -0.156 4.156 4 C 0.093 3.907 5 F -0.144 7.144 6 C -0.158 4.158 7 C -0.076 4.076 8 C -0.092 4.092 9 C 0.122 3.878 10 H 0.054 0.946 11 C -0.136 4.136 12 N -0.682 5.682 13 C 0.070 3.930 14 C -0.058 4.058 15 C -0.129 4.129 16 C -0.115 4.115 17 C 0.034 3.966 18 C -0.507 4.507 19 H 0.059 0.941 20 C 0.055 3.945 21 N -0.898 5.898 22 Si 0.887 3.113 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.274 1.274 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.146 0.854 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.340 0.660 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.032 0.968 39 H 0.064 0.936 40 H 0.040 0.960 41 H 0.039 0.961 42 H 0.054 0.946 43 H 0.042 0.958 44 H 0.015 0.985 45 H 0.012 0.988 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.413 20.049 7.859 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.053 4.053 3 C -0.175 4.175 4 C 0.074 3.926 5 F -0.123 7.123 6 C -0.177 4.177 7 C -0.094 4.094 8 C -0.093 4.093 9 C 0.012 3.988 10 H 0.072 0.928 11 C -0.193 4.193 12 N -0.316 5.316 13 C -0.059 4.059 14 C -0.059 4.059 15 C -0.187 4.187 16 C -0.173 4.173 17 C -0.003 4.003 18 C -0.545 4.545 19 H 0.077 0.923 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.715 3.285 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.199 1.199 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.163 0.837 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.161 0.839 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.033 0.967 45 H 0.031 0.969 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.357 19.678 8.405 21.441 hybrid contribution 0.405 -0.182 -1.267 1.342 sum 1.762 19.496 7.138 20.836 Atomic orbital electron populations 1.20969 0.90587 1.03521 1.02943 1.19567 0.96347 0.91561 0.97865 1.20935 0.92199 0.99067 1.05328 1.17707 0.90150 0.81270 1.03476 1.91485 1.80353 1.46378 1.94036 1.21163 1.00890 0.91213 1.04414 1.21031 0.93614 0.98039 0.96695 1.19999 0.93928 0.94551 1.00805 1.20410 0.93929 0.86997 0.97465 0.92823 1.21804 1.01194 1.01229 0.95108 1.60761 1.17481 1.08916 1.44406 1.22168 0.95609 0.91243 0.96852 1.20630 0.95313 0.94878 0.95040 1.21773 0.99342 0.99591 0.97947 1.21594 0.99331 0.99557 0.96783 1.19115 0.94671 0.91178 0.95368 1.21239 0.93209 1.01511 1.38545 0.92294 1.25014 0.94888 0.98405 0.96280 1.69965 1.11229 1.27443 1.45131 0.86671 0.81148 0.82312 0.78323 1.20781 1.21410 1.19942 0.90680 0.91299 0.90312 0.84996 0.84809 0.83685 0.92691 0.91948 0.91833 0.83910 0.91394 0.95785 0.94911 0.91678 0.94112 0.94169 0.92735 0.93908 0.96696 0.96949 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.25 36.01 0.33 -0.64 16 2 C -0.05 -0.53 5.87 -104.63 -0.61 -1.14 16 3 C -0.16 -1.56 9.68 -39.51 -0.38 -1.94 16 4 C 0.09 1.02 7.30 -39.42 -0.29 0.73 16 5 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 6 C -0.16 -1.64 10.03 -39.52 -0.40 -2.04 16 7 C -0.08 -0.82 8.87 -39.59 -0.35 -1.17 16 8 C -0.09 -1.01 4.99 -104.62 -0.52 -1.53 16 9 C 0.12 1.41 2.15 -68.86 -0.15 1.26 16 10 H 0.05 0.64 6.93 -51.92 -0.36 0.28 16 11 C -0.14 -1.48 9.15 37.16 0.34 -1.14 16 12 N -0.68 -9.17 4.82 -107.95 -0.52 -9.69 16 13 C 0.07 1.14 4.44 -3.82 -0.02 1.13 16 14 C -0.06 -1.12 0.60 -154.51 -0.09 -1.21 16 15 C -0.13 -2.34 7.89 37.16 0.29 -2.04 16 16 C -0.12 -2.16 8.06 37.16 0.30 -1.86 16 17 C 0.03 0.84 4.04 -27.89 -0.11 0.73 16 18 C -0.51 -13.69 7.65 -34.44 -0.26 -13.96 16 19 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 20 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 21 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 22 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 28 H 0.08 0.62 4.99 -51.93 -0.26 0.36 16 29 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 30 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.15 1.53 6.69 -52.49 -0.35 1.18 16 32 H 0.05 0.50 6.39 -51.93 -0.33 0.17 16 33 H 0.06 0.72 7.45 -51.93 -0.39 0.34 16 34 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 35 H 0.34 4.47 5.00 -39.29 -0.20 4.28 16 36 H 0.07 1.15 7.44 -51.93 -0.39 0.76 16 37 H 0.02 0.40 8.06 -51.93 -0.42 -0.01 16 38 H 0.03 0.49 6.57 -51.93 -0.34 0.15 16 39 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 1.10 6.62 -51.93 -0.34 0.76 16 43 H 0.04 0.71 7.60 -51.93 -0.39 0.31 16 44 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 359.08 15.07 5.41 5.41 Total: -1.00 -28.92 359.08 -8.72 -37.65 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -7.35 Total: 1.12 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -2.02 Total: -23.38 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.22 Total: -35.62 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.92 -8.72 -37.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815626494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.293 kcal (2) G-P(sol) polarization free energy of solvation -28.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds