Wall clock time and date at job start Tue Mar 31 2020 07:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38219 * 119.98670 * 2 1 4 4 C 1.38438 * 119.97342 * 179.97438 * 3 2 1 5 5 F 1.35102 * 120.02434 * 179.97438 * 4 3 2 6 6 C 1.38476 * 119.95031 * 359.97438 * 4 3 2 7 7 C 1.38177 * 119.97377 * 0.02562 * 6 4 3 8 8 C 1.38218 * 119.98776 * 179.72028 * 2 1 3 9 9 C 1.50704 * 119.97678 * 0.02562 * 8 2 1 10 10 H 1.09008 * 109.46695 * 39.99565 * 9 8 2 11 11 C 1.52995 * 109.46954 * 280.00240 * 9 8 2 12 12 N 1.46900 * 109.47300 * 159.99580 * 9 8 2 13 13 C 1.46896 * 110.99718 * 204.99945 * 12 9 8 14 14 C 1.53004 * 109.47002 * 180.02562 * 13 12 9 15 15 C 1.53000 * 109.47020 * 300.00389 * 14 13 12 16 16 C 1.53004 * 109.47057 * 59.99992 * 14 13 12 17 17 C 1.52996 * 109.47120 * 180.02562 * 14 13 12 18 18 C 1.50699 * 109.47061 * 180.02562 * 17 14 13 19 19 H 1.08001 * 120.00189 * 359.97438 * 18 17 14 20 20 C 1.37880 * 120.00016 * 180.02562 * 18 17 14 21 21 N 1.31513 * 120.00117 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99896 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47074 * 89.99833 * 22 20 18 24 24 H 1.48499 * 109.47322 * 209.99807 * 22 20 18 25 25 H 1.48503 * 109.47470 * 329.99990 * 22 20 18 26 26 H 1.09002 * 109.47152 * 90.00027 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.00128 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.00109 * 1 2 3 29 29 H 1.08000 * 120.01433 * 359.95519 * 3 2 1 30 30 H 1.07998 * 120.01613 * 179.97438 * 6 4 3 31 31 H 1.08000 * 119.99015 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47533 * 59.99359 * 11 9 8 33 33 H 1.09005 * 109.47338 * 179.97438 * 11 9 8 34 34 H 1.09008 * 109.46868 * 299.99219 * 11 9 8 35 35 H 1.00898 * 111.00010 * 328.95364 * 12 9 8 36 36 H 1.09000 * 109.47739 * 300.00508 * 13 12 9 37 37 H 1.09004 * 109.47559 * 60.00369 * 13 12 9 38 38 H 1.08992 * 109.47419 * 59.99913 * 15 14 13 39 39 H 1.09000 * 109.46771 * 180.02562 * 15 14 13 40 40 H 1.09004 * 109.46857 * 299.99311 * 15 14 13 41 41 H 1.09005 * 109.46924 * 60.00093 * 16 14 13 42 42 H 1.09000 * 109.47119 * 179.97438 * 16 14 13 43 43 H 1.08997 * 109.46936 * 300.00366 * 16 14 13 44 44 H 1.09004 * 109.47373 * 299.99579 * 17 14 13 45 45 H 1.08995 * 109.47557 * 59.99925 * 17 14 13 46 46 H 0.97003 * 119.99910 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1972 0.0000 4 6 3.5822 1.1969 0.0005 5 9 4.2585 2.3664 0.0000 6 6 4.2733 -0.0031 0.0016 7 6 3.5805 -1.1987 0.0016 8 6 2.1979 -1.1971 0.0058 9 6 1.4435 -2.5018 0.0116 10 1 0.5803 -2.4253 -0.6496 11 6 0.9708 -2.8112 1.4334 12 7 2.3253 -3.5793 -0.4568 13 6 1.5461 -4.6877 -1.0246 14 6 2.4967 -5.7884 -1.4998 15 6 3.4356 -5.2250 -2.5684 16 6 3.3198 -6.2980 -0.3150 17 6 1.6852 -6.9425 -2.0917 18 6 2.6214 -8.0269 -2.5593 19 1 3.6885 -7.9049 -2.4459 20 6 2.1157 -9.1743 -3.1327 21 7 0.8164 -9.3227 -3.2711 22 14 3.2763 -10.5182 -3.7128 23 1 3.5180 -11.4761 -2.6041 24 1 2.6684 -11.2350 -4.8625 25 1 4.5652 -9.9119 -4.1329 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 0.8900 0.5138 28 1 -0.3633 -0.8900 0.5139 29 1 1.6579 2.1325 -0.0007 30 1 5.3533 -0.0046 0.0016 31 1 4.1192 -2.1348 0.0020 32 1 0.3166 -2.0117 1.7810 33 1 0.4248 -3.7547 1.4376 34 1 1.8341 -2.8878 2.0947 35 1 2.9983 -3.2318 -1.1233 36 1 0.8774 -5.0893 -0.2632 37 1 0.9593 -4.3246 -1.8684 38 1 4.0137 -4.4027 -2.1471 39 1 4.1125 -6.0093 -2.9072 40 1 2.8492 -4.8620 -3.4125 41 1 2.6508 -6.6993 0.4463 42 1 3.9966 -7.0825 -0.6535 43 1 3.8978 -5.4756 0.1063 44 1 1.0160 -7.3440 -1.3307 45 1 1.0991 -6.5792 -2.9358 46 1 0.4606 -10.1301 -3.6742 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815626494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:10 Heat of formation + Delta-G solvation = -58.810788 kcal Electronic energy + Delta-G solvation = -23679.950136 eV Core-core repulsion = 20289.305260 eV Total energy + Delta-G solvation = -3390.644877 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.88731 -40.85645 -39.03278 -36.46523 -34.48599 -33.80789 -31.70187 -29.91576 -28.79525 -28.11336 -27.84976 -26.67204 -24.75466 -24.07723 -22.50013 -21.27656 -19.57468 -18.32490 -18.18693 -17.65780 -17.19294 -16.62055 -16.52811 -16.12101 -15.56668 -15.42260 -15.01619 -14.81593 -14.59127 -14.37861 -14.14718 -13.91558 -13.84952 -13.78744 -13.43803 -13.23372 -13.09645 -12.82878 -12.69073 -12.57712 -12.38898 -12.30531 -12.22322 -12.10469 -11.96593 -11.80725 -11.70557 -11.32822 -10.83352 -10.71325 -10.48957 -9.86654 -9.49625 -9.27426 -8.12776 -6.19343 0.14498 0.27274 1.41897 1.42017 1.52505 2.44671 2.57205 3.20136 3.21399 3.27861 3.67010 3.79566 3.94153 4.17841 4.21586 4.22711 4.30203 4.40583 4.45746 4.53968 4.64996 4.75643 4.77166 4.79395 4.83887 4.95085 4.98387 5.01334 5.10566 5.11409 5.18438 5.21206 5.24754 5.26663 5.35063 5.44809 5.54416 5.56104 5.57237 5.61996 5.69193 5.90237 5.94636 5.95195 6.15013 6.39213 6.52305 6.96124 7.47958 8.99537 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.027918 B = 0.003021 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.686219 B = 9266.966609 C = 9772.826542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.054 4.054 3 C -0.157 4.157 4 C 0.079 3.921 5 F -0.150 7.150 6 C -0.161 4.161 7 C -0.082 4.082 8 C -0.101 4.101 9 C 0.125 3.875 10 H 0.054 0.946 11 C -0.132 4.132 12 N -0.676 5.676 13 C 0.084 3.916 14 C -0.055 4.055 15 C -0.123 4.123 16 C -0.106 4.106 17 C 0.040 3.960 18 C -0.513 4.513 19 H 0.066 0.934 20 C -0.004 4.004 21 N -0.938 5.938 22 Si 0.954 3.046 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.263 1.263 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.344 0.656 36 H 0.060 0.940 37 H 0.017 0.983 38 H 0.067 0.933 39 H 0.046 0.954 40 H 0.035 0.965 41 H 0.030 0.970 42 H 0.036 0.964 43 H 0.069 0.931 44 H -0.015 1.015 45 H -0.017 1.017 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.483 21.386 8.346 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.055 4.055 3 C -0.176 4.176 4 C 0.060 3.940 5 F -0.128 7.128 6 C -0.180 4.180 7 C -0.100 4.100 8 C -0.101 4.101 9 C 0.015 3.985 10 H 0.072 0.928 11 C -0.190 4.190 12 N -0.310 5.310 13 C -0.046 4.046 14 C -0.055 4.055 15 C -0.180 4.180 16 C -0.163 4.163 17 C 0.003 3.997 18 C -0.551 4.551 19 H 0.084 0.916 20 C -0.201 4.201 21 N -0.579 5.579 22 Si 0.780 3.220 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.187 1.187 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.167 0.833 30 H 0.165 0.835 31 H 0.165 0.835 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.165 0.835 36 H 0.079 0.921 37 H 0.035 0.965 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.055 0.945 43 H 0.088 0.912 44 H 0.003 0.997 45 H 0.002 0.998 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.444 21.032 8.900 22.968 hybrid contribution 0.041 -0.535 -1.394 1.494 sum 2.485 20.497 7.506 21.969 Atomic orbital electron populations 1.21022 0.89153 1.04394 1.03477 1.19771 0.97423 0.91131 0.97158 1.21156 0.91984 0.99865 1.04588 1.17929 0.90714 0.81263 1.04101 1.91470 1.80531 1.46680 1.94155 1.21315 1.01687 0.90936 1.04038 1.21081 0.93634 0.98272 0.96999 1.19982 0.94078 0.94419 1.01658 1.20402 0.93639 0.86741 0.97675 0.92834 1.21782 1.01214 1.01435 0.94584 1.60696 1.17427 1.08963 1.43881 1.21851 0.94868 0.91414 0.96434 1.20490 0.95475 0.93977 0.95579 1.21690 0.98836 1.00030 0.97448 1.21497 0.98829 0.99882 0.96125 1.18997 0.94283 0.92840 0.93583 1.21634 0.93849 1.01966 1.37672 0.91614 1.25901 0.96392 1.01078 0.96702 1.70105 1.13188 1.28240 1.46410 0.85605 0.79337 0.79296 0.77786 1.20168 1.21338 1.18680 0.90249 0.89616 0.90297 0.83273 0.83515 0.83482 0.90817 0.92982 0.92283 0.83456 0.92116 0.96457 0.91415 0.93521 0.94619 0.95072 0.94453 0.91188 0.99710 0.99844 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 9.25 71.24 0.66 -1.00 16 2 C -0.05 -0.96 5.87 -19.87 -0.12 -1.08 16 3 C -0.16 -2.79 9.68 22.31 0.22 -2.57 16 4 C 0.08 1.59 7.30 22.37 0.16 1.75 16 5 F -0.15 -3.21 17.27 44.97 0.78 -2.44 16 6 C -0.16 -3.05 10.03 22.31 0.22 -2.83 16 7 C -0.08 -1.60 8.87 22.26 0.20 -1.40 16 8 C -0.10 -2.00 4.99 -19.86 -0.10 -2.10 16 9 C 0.12 2.68 2.15 44.17 0.09 2.78 16 10 H 0.05 1.18 6.93 -2.38 -0.02 1.17 16 11 C -0.13 -2.67 9.15 71.98 0.66 -2.02 16 12 N -0.68 -17.05 4.82 -495.44 -2.39 -19.44 16 13 C 0.08 2.70 4.44 86.31 0.38 3.09 16 14 C -0.05 -2.10 0.60 -52.18 -0.03 -2.13 16 15 C -0.12 -4.31 7.89 71.98 0.57 -3.74 16 16 C -0.11 -3.88 8.06 71.98 0.58 -3.30 16 17 C 0.04 2.07 4.04 29.85 0.12 2.19 16 18 C -0.51 -28.13 7.65 25.60 0.20 -27.93 16 19 H 0.07 3.45 5.68 -2.91 -0.02 3.44 16 20 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 21 N -0.94 -57.11 13.29 21.45 0.28 -56.82 16 22 Si 0.95 44.25 29.54 68.60 2.03 46.28 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 25 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 26 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.09 0.85 8.09 -2.39 -0.02 0.83 16 28 H 0.08 1.05 4.99 -2.38 -0.01 1.04 16 29 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 30 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.15 2.76 6.69 -2.91 -0.02 2.74 16 32 H 0.07 1.20 6.39 -2.39 -0.02 1.18 16 33 H 0.05 1.16 7.45 -2.38 -0.02 1.14 16 34 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.34 8.25 5.00 -89.70 -0.45 7.81 16 36 H 0.06 2.06 7.44 -2.39 -0.02 2.04 16 37 H 0.02 0.58 8.06 -2.39 -0.02 0.56 16 38 H 0.07 1.89 6.57 -2.39 -0.02 1.87 16 39 H 0.05 1.80 6.62 -2.39 -0.02 1.78 16 40 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.04 1.47 6.62 -2.39 -0.02 1.45 16 43 H 0.07 2.17 7.60 -2.39 -0.02 2.15 16 44 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16 45 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 46 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -62.69 359.08 5.50 -57.20 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.52 Total: 15.28 kcal Atomic # 6 Polarization: -44.34 SS G_CDS: 4.28 Total: -40.06 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -2.10 Total: -76.26 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.44 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -62.69 5.50 -57.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815626494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.613 kcal (2) G-P(sol) polarization free energy of solvation -62.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds