Wall clock time and date at job start Tue Mar 31 2020 07:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46817 * 2 1 4 4 C 1.52999 * 109.47317 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47159 * 300.00546 * 4 3 2 6 6 C 1.50699 * 109.47155 * 179.97438 * 5 4 3 7 7 N 1.29948 * 126.28598 * 300.02341 * 6 5 4 8 8 O 1.21304 * 110.25235 * 179.97438 * 7 6 5 9 9 C 1.33652 * 109.81005 * 0.02562 * 8 7 6 10 10 C 1.50695 * 126.55202 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.47040 * 164.97237 * 10 9 8 12 12 N 1.46903 * 109.47053 * 44.97370 * 10 9 8 13 13 C 1.52996 * 109.47080 * 284.97405 * 10 9 8 14 14 C 1.53004 * 109.47460 * 184.99853 * 13 10 9 15 15 C 1.50695 * 109.47513 * 180.02562 * 14 13 10 16 16 H 1.08002 * 119.99915 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00024 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00055 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00210 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46797 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47153 * 120.00028 * 19 17 15 22 22 H 1.48497 * 109.47429 * 240.00331 * 19 17 15 23 23 N 1.31133 * 106.89365 * 359.76387 * 9 8 7 24 24 C 1.52997 * 109.47452 * 59.99536 * 5 4 3 25 25 C 1.53000 * 109.47233 * 119.99806 * 2 1 3 26 26 H 1.09002 * 109.47075 * 299.99262 * 1 2 3 27 27 H 1.08996 * 109.47407 * 60.00219 * 1 2 3 28 28 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47070 * 240.00180 * 2 1 3 30 30 H 1.08996 * 109.47853 * 300.00202 * 3 2 1 31 31 H 1.09002 * 109.47153 * 60.00231 * 3 2 1 32 32 H 1.09000 * 109.47486 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.46716 * 60.00091 * 4 3 2 34 34 H 1.09002 * 109.46935 * 299.99411 * 5 4 3 35 35 H 1.00894 * 110.99991 * 176.04876 * 12 10 9 36 36 H 1.00901 * 110.99662 * 299.99803 * 12 10 9 37 37 H 1.09002 * 109.47658 * 305.00031 * 13 10 9 38 38 H 1.09001 * 109.47384 * 64.99925 * 13 10 9 39 39 H 1.09002 * 109.46830 * 300.00684 * 14 13 10 40 40 H 1.09001 * 109.46764 * 59.99692 * 14 13 10 41 41 H 0.97007 * 119.99798 * 179.97438 * 18 17 15 42 42 H 1.08993 * 109.47194 * 179.97438 * 24 5 4 43 43 H 1.09002 * 109.46695 * 59.99734 * 24 5 4 44 44 H 1.08992 * 109.47399 * 300.00166 * 25 2 1 45 45 H 1.09004 * 109.46724 * 60.00652 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0795 0.7215 1.2502 6 6 5.5865 0.7211 1.2505 7 7 6.3556 0.1973 0.3434 8 8 7.5214 0.3649 0.6336 9 6 7.6094 1.0313 1.7888 10 6 8.8764 1.4386 2.4957 11 1 8.6446 2.1848 3.2557 12 7 9.8188 2.0071 1.5227 13 6 9.5065 0.2128 3.1598 14 6 10.7231 0.6460 3.9803 15 6 11.3441 -0.5614 4.6339 16 1 10.9139 -1.5400 4.4800 17 6 12.4609 -0.4168 5.4294 18 7 12.9839 0.7751 5.6181 19 14 13.2304 -1.9134 6.2403 20 1 12.4580 -3.1274 5.8728 21 1 14.6335 -2.0609 5.7769 22 1 13.2116 -1.7419 7.7152 23 7 6.3825 1.2669 2.1872 24 6 3.5696 -0.7210 1.2502 25 6 2.0401 -0.7212 1.2493 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.9332 2.4703 0.0011 33 1 3.9336 0.9287 -0.8892 34 1 3.7158 1.2354 2.1400 35 1 10.6508 2.3469 1.9812 36 1 10.0496 1.3342 0.8072 37 1 8.7761 -0.2610 3.8156 38 1 9.8193 -0.4956 2.3927 39 1 11.4536 1.1198 3.3245 40 1 10.4103 1.3544 4.7474 41 1 13.7695 0.8769 6.1781 42 1 3.9330 -1.2348 2.1401 43 1 3.9333 -1.2349 0.3603 44 1 1.6768 -0.2074 2.1392 45 1 1.6768 -1.7489 1.2492 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822760206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:01 Heat of formation + Delta-G solvation = 19.548811 kcal Electronic energy + Delta-G solvation = -23281.652770 eV Core-core repulsion = 19914.325782 eV Total energy + Delta-G solvation = -3367.326988 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.36229 -39.23629 -36.82413 -35.71926 -33.47053 -32.90835 -31.16650 -31.09570 -30.05745 -27.16458 -26.63753 -24.27953 -23.59490 -22.98494 -22.30750 -20.88717 -20.19488 -19.54955 -17.76253 -17.39530 -16.57851 -15.93459 -15.70443 -14.79851 -14.59292 -14.56467 -14.43699 -14.32874 -13.83610 -13.52044 -13.47529 -12.73293 -12.64976 -12.51358 -12.36719 -12.19406 -12.14156 -11.80244 -11.45927 -11.26838 -11.23077 -11.11219 -10.98268 -10.88711 -10.78373 -10.62816 -10.52604 -10.37423 -10.05907 -9.81658 -9.56446 -9.27926 -8.53120 -8.45481 -6.11719 -4.14772 1.36455 2.39969 3.05008 3.25125 3.33294 3.37173 3.59421 4.11600 4.36996 4.38323 4.39298 4.56973 4.73652 4.86502 4.97864 5.07661 5.11817 5.17159 5.21618 5.24878 5.28766 5.36082 5.46687 5.50847 5.53585 5.60660 5.63171 5.75527 5.79035 5.87985 5.90427 5.93677 5.99400 6.04368 6.13196 6.22189 6.30207 6.42033 6.77384 7.21003 7.44066 7.56280 7.62969 7.85240 8.26617 8.37227 8.90908 9.50462 10.99244 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029843 B = 0.002636 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.011738 B =10617.928809 C =11184.240519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.111 4.111 4 C -0.111 4.111 5 C 0.008 3.992 6 C 0.172 3.828 7 N -0.389 5.389 8 O 0.075 5.925 9 C 0.214 3.786 10 C 0.180 3.820 11 H 0.122 0.878 12 N -0.840 5.840 13 C -0.142 4.142 14 C 0.025 3.975 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 N -0.488 5.488 24 C -0.112 4.112 25 C -0.111 4.111 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.366 0.634 36 H 0.344 0.656 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.020 0.980 40 H 0.022 0.978 41 H 0.262 0.738 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.808 0.748 -11.123 23.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.149 4.149 4 C -0.149 4.149 5 C -0.012 4.012 6 C -0.101 4.101 7 N -0.098 5.098 8 O 0.019 5.981 9 C -0.007 4.007 10 C 0.066 3.934 11 H 0.140 0.860 12 N -0.373 5.373 13 C -0.183 4.183 14 C -0.012 4.012 15 C -0.562 4.562 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 N -0.222 5.222 24 C -0.150 4.150 25 C -0.149 4.149 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.183 0.817 36 H 0.156 0.844 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.849 1.138 -11.630 24.778 hybrid contribution 1.408 -1.527 0.935 2.278 sum -20.441 -0.389 -10.695 23.073 Atomic orbital electron populations 1.21827 0.95176 1.01679 1.01764 1.21183 0.95427 0.96133 0.98626 1.21579 0.94502 0.96470 1.02305 1.21579 0.95879 1.00526 0.96945 1.19550 0.82690 0.98188 1.00780 1.25740 0.99771 0.96546 0.88080 1.74530 0.89433 1.22401 1.23460 1.85260 1.22165 1.55539 1.35177 1.29066 0.96943 0.90179 0.84476 1.20215 0.83304 0.98414 0.91429 0.86016 1.58978 1.20329 1.42213 1.15815 1.22531 1.00401 0.95260 1.00073 1.19110 0.90438 0.97262 0.94427 1.21176 1.11771 0.93764 1.29452 0.92593 1.25007 0.96942 0.95939 0.96426 1.69955 1.22604 1.21803 1.38751 0.86516 0.79145 0.83017 0.79231 1.19754 1.20923 1.20912 1.71887 0.99619 1.23183 1.27484 1.21576 0.95893 0.94627 1.02934 1.21570 0.94507 1.00703 0.98088 0.92631 0.92741 0.92721 0.91084 0.91559 0.91588 0.91575 0.91192 0.88248 0.81692 0.84360 0.92019 0.92228 0.96179 0.95984 0.92878 0.91491 0.91185 0.91574 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.19 37.16 0.34 -0.56 16 2 C -0.10 -0.70 2.72 -90.62 -0.25 -0.94 16 3 C -0.11 -0.85 5.20 -26.73 -0.14 -0.99 16 4 C -0.11 -1.10 5.19 -26.73 -0.14 -1.24 16 5 C 0.01 0.09 2.66 -91.77 -0.24 -0.15 16 6 C 0.17 2.62 6.72 -156.37 -1.05 1.57 16 7 N -0.39 -6.30 12.16 30.91 0.38 -5.93 16 8 O 0.08 1.25 11.29 18.08 0.20 1.45 16 9 C 0.21 3.58 7.32 -13.05 -0.10 3.48 16 10 C 0.18 2.95 3.35 -68.87 -0.23 2.72 16 11 H 0.12 2.01 8.14 -51.93 -0.42 1.59 16 12 N -0.84 -12.49 9.17 -5.66 -0.05 -12.55 16 13 C -0.14 -2.71 4.78 -26.73 -0.13 -2.84 16 14 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 15 C -0.52 -14.10 9.11 -34.45 -0.31 -14.41 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 19 Si 0.89 21.08 29.54 -169.99 -5.02 16.05 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 N -0.49 -8.27 11.55 -9.86 -0.11 -8.38 16 24 C -0.11 -1.14 5.18 -26.76 -0.14 -1.28 16 25 C -0.11 -0.88 5.20 -26.76 -0.14 -1.02 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.37 5.48 7.55 -39.29 -0.30 5.18 16 36 H 0.34 4.77 8.97 -39.29 -0.35 4.42 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.02 0.47 6.87 -51.93 -0.36 0.12 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 363.00 15.07 5.47 5.47 Total: -1.00 -29.21 363.00 -8.89 -38.10 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -7.73 Total: 4.32 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -2.75 Total: -13.70 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.95 Total: -51.71 kcal Atomic # 8 Polarization: 1.25 SS G_CDS: 0.20 Total: 1.45 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.21 -8.89 -38.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822760206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.650 kcal (2) G-P(sol) polarization free energy of solvation -29.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds