Wall clock time and date at job start Tue Mar 31 2020 07:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46817 * 2 1 4 4 C 1.52999 * 109.47317 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47159 * 300.00546 * 4 3 2 6 6 C 1.50699 * 109.47155 * 179.97438 * 5 4 3 7 7 N 1.29948 * 126.28598 * 300.02341 * 6 5 4 8 8 O 1.21304 * 110.25235 * 179.97438 * 7 6 5 9 9 C 1.33652 * 109.81005 * 0.02562 * 8 7 6 10 10 C 1.50695 * 126.55202 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.47040 * 164.97237 * 10 9 8 12 12 N 1.46903 * 109.47053 * 44.97370 * 10 9 8 13 13 C 1.52996 * 109.47080 * 284.97405 * 10 9 8 14 14 C 1.53004 * 109.47460 * 184.99853 * 13 10 9 15 15 C 1.50695 * 109.47513 * 180.02562 * 14 13 10 16 16 H 1.08002 * 119.99915 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00024 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00055 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00210 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46797 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47153 * 120.00028 * 19 17 15 22 22 H 1.48497 * 109.47429 * 240.00331 * 19 17 15 23 23 N 1.31133 * 106.89365 * 359.76387 * 9 8 7 24 24 C 1.52997 * 109.47452 * 59.99536 * 5 4 3 25 25 C 1.53000 * 109.47233 * 119.99806 * 2 1 3 26 26 H 1.09002 * 109.47075 * 299.99262 * 1 2 3 27 27 H 1.08996 * 109.47407 * 60.00219 * 1 2 3 28 28 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47070 * 240.00180 * 2 1 3 30 30 H 1.08996 * 109.47853 * 300.00202 * 3 2 1 31 31 H 1.09002 * 109.47153 * 60.00231 * 3 2 1 32 32 H 1.09000 * 109.47486 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.46716 * 60.00091 * 4 3 2 34 34 H 1.09002 * 109.46935 * 299.99411 * 5 4 3 35 35 H 1.00894 * 110.99991 * 176.04876 * 12 10 9 36 36 H 1.00901 * 110.99662 * 299.99803 * 12 10 9 37 37 H 1.09002 * 109.47658 * 305.00031 * 13 10 9 38 38 H 1.09001 * 109.47384 * 64.99925 * 13 10 9 39 39 H 1.09002 * 109.46830 * 300.00684 * 14 13 10 40 40 H 1.09001 * 109.46764 * 59.99692 * 14 13 10 41 41 H 0.97007 * 119.99798 * 179.97438 * 18 17 15 42 42 H 1.08993 * 109.47194 * 179.97438 * 24 5 4 43 43 H 1.09002 * 109.46695 * 59.99734 * 24 5 4 44 44 H 1.08992 * 109.47399 * 300.00166 * 25 2 1 45 45 H 1.09004 * 109.46724 * 60.00652 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0795 0.7215 1.2502 6 6 5.5865 0.7211 1.2505 7 7 6.3556 0.1973 0.3434 8 8 7.5214 0.3649 0.6336 9 6 7.6094 1.0313 1.7888 10 6 8.8764 1.4386 2.4957 11 1 8.6446 2.1848 3.2557 12 7 9.8188 2.0071 1.5227 13 6 9.5065 0.2128 3.1598 14 6 10.7231 0.6460 3.9803 15 6 11.3441 -0.5614 4.6339 16 1 10.9139 -1.5400 4.4800 17 6 12.4609 -0.4168 5.4294 18 7 12.9839 0.7751 5.6181 19 14 13.2304 -1.9134 6.2403 20 1 12.4580 -3.1274 5.8728 21 1 14.6335 -2.0609 5.7769 22 1 13.2116 -1.7419 7.7152 23 7 6.3825 1.2669 2.1872 24 6 3.5696 -0.7210 1.2502 25 6 2.0401 -0.7212 1.2493 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.9332 2.4703 0.0011 33 1 3.9336 0.9287 -0.8892 34 1 3.7158 1.2354 2.1400 35 1 10.6508 2.3469 1.9812 36 1 10.0496 1.3342 0.8072 37 1 8.7761 -0.2610 3.8156 38 1 9.8193 -0.4956 2.3927 39 1 11.4536 1.1198 3.3245 40 1 10.4103 1.3544 4.7474 41 1 13.7695 0.8769 6.1781 42 1 3.9330 -1.2348 2.1401 43 1 3.9333 -1.2349 0.3603 44 1 1.6768 -0.2074 2.1392 45 1 1.6768 -1.7489 1.2492 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822760206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:01 Heat of formation + Delta-G solvation = 1.230190 kcal Electronic energy + Delta-G solvation = -23282.447125 eV Core-core repulsion = 19914.325782 eV Total energy + Delta-G solvation = -3368.121343 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -46.64218 -39.99693 -38.28596 -36.88932 -35.15861 -34.14535 -32.38229 -31.81362 -31.70994 -28.26312 -27.89755 -25.97738 -24.73511 -23.70141 -23.56548 -22.26104 -21.19713 -20.49352 -19.06535 -18.84882 -18.30209 -17.40880 -16.59008 -16.46810 -15.77996 -15.61540 -15.28775 -15.16518 -15.11876 -14.88709 -14.52406 -14.18148 -13.98330 -13.42688 -13.37081 -13.24819 -13.05875 -13.00994 -12.94619 -12.74677 -12.50639 -12.31524 -12.22097 -12.06965 -11.87389 -11.81692 -11.57698 -11.49556 -11.33230 -11.21046 -11.15815 -10.80596 -10.56032 -9.85338 -8.21614 -6.31167 0.05755 1.14797 1.39132 1.41142 1.52420 1.72509 2.39080 2.45138 2.95376 3.12646 3.53024 3.66879 3.68896 3.76943 3.93537 3.99928 4.15473 4.16986 4.21957 4.33632 4.42063 4.48877 4.52248 4.59827 4.68359 4.77469 4.82574 4.85864 4.97136 4.99040 5.01266 5.02015 5.04542 5.15245 5.18073 5.26607 5.39351 5.41240 5.46565 5.57727 5.64777 5.80179 5.93951 6.20725 6.40054 6.83736 7.08817 7.37800 8.89352 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029843 B = 0.002636 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.011738 B =10617.928809 C =11184.240519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.106 4.106 4 C -0.105 4.105 5 C 0.006 3.994 6 C 0.174 3.826 7 N -0.399 5.399 8 O 0.069 5.931 9 C 0.211 3.789 10 C 0.194 3.806 11 H 0.122 0.878 12 N -0.833 5.833 13 C -0.127 4.127 14 C 0.030 3.970 15 C -0.544 4.544 16 H 0.054 0.946 17 C 0.006 3.994 18 N -0.925 5.925 19 Si 0.958 3.042 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.280 1.280 23 N -0.503 5.503 24 C -0.107 4.107 25 C -0.106 4.106 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.366 0.634 36 H 0.352 0.648 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.016 0.984 40 H 0.001 0.999 41 H 0.264 0.736 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.242 0.199 -11.510 25.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.143 4.143 4 C -0.144 4.144 5 C -0.014 4.014 6 C -0.099 4.099 7 N -0.110 5.110 8 O 0.015 5.985 9 C -0.010 4.010 10 C 0.079 3.921 11 H 0.139 0.861 12 N -0.367 5.367 13 C -0.167 4.167 14 C -0.007 4.007 15 C -0.582 4.582 16 H 0.072 0.928 17 C -0.192 4.192 18 N -0.565 5.565 19 Si 0.783 3.217 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.205 1.205 23 N -0.237 5.237 24 C -0.146 4.146 25 C -0.144 4.144 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.123 0.877 35 H 0.184 0.816 36 H 0.165 0.835 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.034 0.966 40 H 0.019 0.981 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.277 0.583 -12.035 26.210 hybrid contribution 1.836 -1.340 1.035 2.497 sum -21.441 -0.757 -11.000 24.110 Atomic orbital electron populations 1.21794 0.93919 1.02141 1.02269 1.21169 0.96399 0.95631 0.98025 1.21566 0.92481 0.97021 1.03250 1.21543 0.97633 0.99650 0.95572 1.19808 0.80401 0.99368 1.01859 1.26421 1.01196 0.95191 0.87089 1.74524 0.89392 1.23103 1.23985 1.85247 1.22521 1.55660 1.35116 1.28985 0.96943 0.90362 0.84690 1.19940 0.83517 0.97008 0.91595 0.86074 1.58964 1.20149 1.42124 1.15420 1.22276 0.98531 0.96366 0.99520 1.18969 0.91854 0.95729 0.94141 1.21608 1.12091 0.94728 1.29730 0.92805 1.25829 0.97585 0.98709 0.97122 1.70055 1.23157 1.23681 1.39559 0.85508 0.78333 0.79679 0.78189 1.19162 1.20299 1.20529 1.71903 0.99943 1.23748 1.28145 1.21542 0.97710 0.93409 1.01928 1.21558 0.92442 1.01567 0.98792 0.92206 0.92180 0.92323 0.91575 0.90423 0.90826 0.92182 0.92172 0.87667 0.81634 0.83509 0.92812 0.91824 0.96581 0.98101 0.92692 0.92490 0.92188 0.90844 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.19 71.98 0.66 -0.73 16 2 C -0.09 -1.18 2.72 -10.79 -0.03 -1.21 16 3 C -0.11 -1.40 5.20 30.59 0.16 -1.24 16 4 C -0.11 -1.98 5.19 30.60 0.16 -1.82 16 5 C 0.01 0.13 2.66 -11.54 -0.03 0.10 16 6 C 0.17 5.23 6.72 138.46 0.93 6.16 16 7 N -0.40 -12.82 12.16 -60.28 -0.73 -13.56 16 8 O 0.07 2.26 11.29 74.75 0.84 3.11 16 9 C 0.21 6.98 7.32 88.38 0.65 7.63 16 10 C 0.19 6.29 3.35 44.17 0.15 6.44 16 11 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16 12 N -0.83 -24.33 9.17 -171.81 -1.58 -25.91 16 13 C -0.13 -4.81 4.78 30.59 0.15 -4.67 16 14 C 0.03 1.44 4.74 29.85 0.14 1.58 16 15 C -0.54 -29.40 9.11 25.60 0.23 -29.17 16 16 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 17 C 0.01 0.34 5.46 84.65 0.46 0.80 16 18 N -0.92 -53.36 13.29 21.45 0.28 -53.08 16 19 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 23 N -0.50 -16.86 11.55 -303.15 -3.50 -20.36 16 24 C -0.11 -2.10 5.18 30.58 0.16 -1.95 16 25 C -0.11 -1.48 5.20 30.58 0.16 -1.32 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.37 10.86 7.55 -89.70 -0.68 10.18 16 36 H 0.35 9.48 8.97 -89.69 -0.80 8.68 16 37 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.02 0.77 6.87 -2.39 -0.02 0.75 16 40 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -61.36 363.00 0.79 -60.57 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -0.50 Total: 23.51 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 3.95 Total: -19.39 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -5.53 Total: -112.90 kcal Atomic # 8 Polarization: 2.26 SS G_CDS: 0.84 Total: 3.11 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -61.36 0.79 -60.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822760206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.797 kcal (2) G-P(sol) polarization free energy of solvation -61.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds