Wall clock time and date at job start Tue Mar 31 2020 07:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 110.01705 * 2 1 4 4 C 1.50703 * 109.47240 * 59.30138 * 3 2 1 5 5 N 1.29940 * 126.28617 * 269.98148 * 4 3 2 6 6 O 1.21299 * 110.25396 * 180.02562 * 5 4 3 7 7 C 1.33644 * 109.80895 * 359.97438 * 6 5 4 8 8 C 1.50702 * 126.55345 * 180.26346 * 7 6 5 9 9 H 1.08998 * 109.47468 * 164.69423 * 8 7 6 10 10 N 1.46898 * 109.46712 * 44.69236 * 8 7 6 11 11 C 1.52997 * 109.47341 * 284.69508 * 8 7 6 12 12 C 1.52994 * 109.47566 * 184.99816 * 11 8 7 13 13 C 1.50699 * 109.47707 * 179.97438 * 12 11 8 14 14 H 1.08007 * 119.99684 * 359.97438 * 13 12 11 15 15 C 1.37865 * 120.00178 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00374 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00401 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46989 * 89.99894 * 17 15 13 19 19 H 1.48502 * 109.47508 * 210.00159 * 17 15 13 20 20 H 1.48504 * 109.47034 * 330.00273 * 17 15 13 21 21 N 1.31134 * 106.89611 * 0.02562 * 7 6 5 22 22 C 1.54268 * 110.03664 * 121.39091 * 2 1 3 23 23 C 1.54968 * 104.15803 * 95.75248 * 22 2 1 24 24 C 1.54886 * 102.77859 * 37.89191 * 23 22 2 25 25 C 1.53877 * 110.03342 * 238.60824 * 2 1 3 26 26 H 1.08997 * 109.47437 * 60.69627 * 1 2 3 27 27 H 1.09004 * 109.46932 * 180.70430 * 1 2 3 28 28 H 1.09004 * 109.47199 * 300.69635 * 1 2 3 29 29 H 1.09000 * 109.47325 * 299.30278 * 3 2 1 30 30 H 1.09000 * 109.47404 * 179.29959 * 3 2 1 31 31 H 1.00907 * 111.00002 * 176.04656 * 10 8 7 32 32 H 1.00901 * 111.00511 * 299.99704 * 10 8 7 33 33 H 1.09001 * 109.46946 * 305.00274 * 11 8 7 34 34 H 1.09004 * 109.47432 * 64.99170 * 11 8 7 35 35 H 1.09001 * 109.46879 * 299.99984 * 12 11 8 36 36 H 1.09002 * 109.47328 * 59.99798 * 12 11 8 37 37 H 0.96990 * 120.00625 * 179.97438 * 16 15 13 38 38 H 1.08991 * 110.49024 * 214.40258 * 22 2 1 39 39 H 1.09007 * 110.48260 * 337.04917 * 22 2 1 40 40 H 1.09000 * 110.71976 * 279.57410 * 23 22 2 41 41 H 1.09001 * 110.76414 * 156.22594 * 23 22 2 42 42 H 1.08993 * 110.48774 * 203.40364 * 24 23 22 43 43 H 1.08998 * 110.48609 * 80.75764 * 24 23 22 44 44 H 1.09000 * 110.02749 * 359.95306 * 25 2 1 45 45 H 1.09002 * 110.03317 * 121.32970 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 1.5441 2.1579 1.2217 5 7 0.4380 2.8340 1.3103 6 8 0.3146 3.2930 2.4263 7 6 1.3620 2.9421 3.1787 8 6 1.5901 3.3031 4.6239 9 1 2.3702 2.6651 5.0391 10 7 0.3452 3.1092 5.3793 11 6 2.0230 4.7673 4.7216 12 6 2.3746 5.0995 6.1731 13 6 2.8016 6.5415 6.2693 14 1 2.8208 7.1592 5.3835 15 6 3.1688 7.0719 7.4877 16 7 3.5420 8.3303 7.5716 17 14 3.1364 6.0035 9.0196 18 1 4.4552 5.3423 9.1900 19 1 2.8491 6.8484 10.2065 20 1 2.0790 4.9701 8.8800 21 7 2.1507 2.2192 2.4205 22 6 2.0585 -0.7549 1.2372 23 6 2.3299 -2.1897 0.7184 24 6 2.8885 -1.9396 -0.7044 25 6 2.0571 -0.7530 -1.2341 26 1 -0.3634 0.5030 -0.8961 27 1 -0.3633 -1.0276 0.0126 28 1 -0.3634 0.5246 0.8837 29 1 1.7055 1.9512 -0.8962 30 1 3.1435 1.4273 0.0126 31 1 0.4884 3.2828 6.3630 32 1 -0.3941 3.6903 5.0135 33 1 2.8960 4.9310 4.0897 34 1 1.2081 5.4102 4.3888 35 1 1.5016 4.9358 6.8049 36 1 3.1896 4.4567 6.5059 37 1 3.8000 8.7036 8.4288 38 1 2.9806 -0.2989 1.5972 39 1 1.3058 -0.7695 2.0255 40 1 1.4053 -2.7653 0.6748 41 1 3.0700 -2.6923 1.3411 42 1 2.7415 -2.8186 -1.3319 43 1 3.9448 -1.6749 -0.6584 44 1 1.2228 -1.1192 -1.8325 45 1 2.6853 -0.0940 -1.8334 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823224903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:56 Heat of formation + Delta-G solvation = 12.414363 kcal Electronic energy + Delta-G solvation = -23724.528359 eV Core-core repulsion = 20356.891998 eV Total energy + Delta-G solvation = -3367.636361 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.59719 -40.16352 -38.32476 -36.84252 -35.08823 -33.90770 -32.46810 -31.93248 -29.65213 -29.02399 -28.49686 -26.06812 -25.71649 -24.21193 -22.69058 -21.74073 -21.30632 -19.70230 -19.16893 -18.90999 -18.32282 -17.48051 -16.63846 -16.24730 -16.09608 -15.94322 -15.29845 -15.12181 -14.87836 -14.71419 -14.62970 -14.39836 -13.99702 -13.91043 -13.40336 -13.23741 -13.05617 -12.86475 -12.72129 -12.56726 -12.10104 -12.01039 -11.95118 -11.93151 -11.85200 -11.70104 -11.65410 -11.59767 -11.43260 -11.41016 -11.33770 -10.85966 -10.76243 -9.85361 -8.28645 -6.34834 0.11018 1.21025 1.41269 1.42466 1.53647 1.77984 2.38050 2.53055 2.98665 3.07245 3.59466 3.61788 3.63467 3.70406 3.86435 3.95236 4.15300 4.28927 4.34489 4.36109 4.44645 4.50161 4.61004 4.62585 4.66471 4.76891 4.79707 4.82412 4.89891 4.94093 4.97896 4.98585 5.04298 5.12613 5.22643 5.25784 5.34853 5.41106 5.44434 5.46119 5.51072 5.62889 5.93979 6.25371 6.40926 6.73857 7.14194 7.30083 8.88246 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029028 B = 0.002954 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.364498 B = 9477.769834 C = 9704.467214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.056 4.056 3 C -0.021 4.021 4 C 0.179 3.821 5 N -0.404 5.404 6 O 0.065 5.935 7 C 0.206 3.794 8 C 0.194 3.806 9 H 0.131 0.869 10 N -0.833 5.833 11 C -0.124 4.124 12 C -0.005 4.005 13 C -0.536 4.536 14 H 0.025 0.975 15 C 0.001 3.999 16 N -0.955 5.955 17 Si 0.954 3.046 18 H -0.269 1.269 19 H -0.290 1.290 20 H -0.229 1.229 21 N -0.494 5.494 22 C -0.113 4.113 23 C -0.122 4.122 24 C -0.120 4.120 25 C -0.109 4.109 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.026 0.974 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.367 0.633 32 H 0.352 0.648 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.038 0.962 36 H 0.028 0.972 37 H 0.266 0.734 38 H 0.063 0.937 39 H 0.040 0.960 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.843 -22.482 -14.849 27.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.057 4.057 3 C -0.059 4.059 4 C -0.094 4.094 5 N -0.115 5.115 6 O 0.011 5.989 7 C -0.016 4.016 8 C 0.080 3.920 9 H 0.148 0.852 10 N -0.367 5.367 11 C -0.165 4.165 12 C -0.043 4.043 13 C -0.573 4.573 14 H 0.043 0.957 15 C -0.196 4.196 16 N -0.595 5.595 17 Si 0.777 3.223 18 H -0.195 1.195 19 H -0.216 1.216 20 H -0.152 1.152 21 N -0.228 5.228 22 C -0.151 4.151 23 C -0.159 4.159 24 C -0.158 4.158 25 C -0.147 4.147 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.185 0.815 32 H 0.165 0.835 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.977 -23.253 -15.742 28.518 hybrid contribution 0.244 1.799 1.233 2.195 sum -4.733 -21.454 -14.509 26.328 Atomic orbital electron populations 1.21895 0.94364 1.01853 1.01064 1.21172 0.95514 0.92141 0.96902 1.20434 1.01937 0.94138 0.89439 1.26269 0.88829 0.97830 0.96456 1.74592 1.21409 1.16030 0.99499 1.85234 1.41405 1.56111 1.16120 1.28989 0.82900 0.91459 0.98206 1.19966 0.95001 0.96564 0.80504 0.85154 1.58959 1.05844 1.63183 1.08749 1.22151 1.01203 0.93813 0.99288 1.19495 0.97227 0.94445 0.93106 1.21420 1.44859 0.96670 0.94400 0.95674 1.26106 0.93975 0.96300 1.03184 1.70084 1.47012 1.15713 1.26697 0.85602 0.80262 0.79199 0.77244 1.19468 1.21622 1.15203 1.71879 1.29376 1.19348 1.02217 1.22445 1.00240 0.96348 0.96059 1.22497 1.01020 0.95519 0.96912 1.22346 0.99558 0.98183 0.95706 1.22226 1.00128 0.96876 0.95424 0.91859 0.91451 0.95450 0.88052 0.87812 0.81516 0.83451 0.92959 0.92218 0.94362 0.95333 0.92533 0.91853 0.94094 0.91382 0.91329 0.90381 0.91310 0.90424 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 7.87 71.98 0.57 -1.97 16 2 C -0.06 -0.98 0.68 -51.46 -0.04 -1.01 16 3 C -0.02 -0.42 4.54 29.85 0.14 -0.28 16 4 C 0.18 5.01 5.89 138.47 0.82 5.83 16 5 N -0.40 -12.42 11.41 -60.34 -0.69 -13.10 16 6 O 0.07 2.05 11.29 74.83 0.84 2.89 16 7 C 0.21 6.31 7.32 88.38 0.65 6.95 16 8 C 0.19 5.58 3.35 44.17 0.15 5.73 16 9 H 0.13 3.58 8.14 -2.39 -0.02 3.57 16 10 N -0.83 -20.92 9.17 -171.81 -1.58 -22.49 16 11 C -0.12 -4.42 4.78 30.59 0.15 -4.27 16 12 C -0.01 -0.22 3.81 29.85 0.11 -0.10 16 13 C -0.54 -29.65 9.66 25.60 0.25 -29.40 16 14 H 0.02 1.57 7.99 -2.91 -0.02 1.54 16 15 C 0.00 0.05 5.47 84.65 0.46 0.51 16 16 N -0.95 -59.17 13.96 21.44 0.30 -58.87 16 17 Si 0.95 41.68 27.47 68.60 1.88 43.56 16 18 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 19 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.23 -8.65 6.54 99.48 0.65 -8.00 16 21 N -0.49 -15.16 11.49 -303.21 -3.48 -18.64 16 22 C -0.11 -2.22 5.24 31.70 0.17 -2.05 16 23 C -0.12 -1.79 6.91 31.91 0.22 -1.57 16 24 C -0.12 -1.41 6.83 31.67 0.22 -1.20 16 25 C -0.11 -1.34 6.11 31.32 0.19 -1.15 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.03 0.66 6.68 -2.38 -0.02 0.64 16 29 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.10 1.91 8.13 -2.39 -0.02 1.89 16 31 H 0.37 8.63 7.55 -89.69 -0.68 7.95 16 32 H 0.35 8.39 8.97 -89.69 -0.80 7.59 16 33 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.04 1.45 5.93 -2.39 -0.01 1.44 16 36 H 0.03 1.14 7.57 -2.39 -0.02 1.12 16 37 H 0.27 15.38 8.31 -92.72 -0.77 14.61 16 38 H 0.06 1.40 7.84 -2.39 -0.02 1.38 16 39 H 0.04 0.95 7.84 -2.38 -0.02 0.94 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.08 0.84 7.67 -2.39 -0.02 0.82 16 45 H 0.08 0.82 7.67 -2.39 -0.02 0.80 16 Total: -1.00 -66.48 357.56 0.77 -65.71 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -0.55 Total: 24.93 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 4.04 Total: -23.99 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -5.45 Total: -113.11 kcal Atomic # 8 Polarization: 2.05 SS G_CDS: 0.84 Total: 2.89 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.88 Total: 43.56 kcal Total: -66.48 0.77 -65.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823224903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.122 kcal (2) G-P(sol) polarization free energy of solvation -66.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds