Wall clock time and date at job start Tue Mar 31 2020 06:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99724 * 2 1 4 4 C 1.53003 * 109.47117 * 180.02562 * 3 2 1 5 5 C 1.50691 * 109.47186 * 179.97438 * 4 3 2 6 6 C 1.38272 * 119.94350 * 89.99705 * 5 4 3 7 7 C 1.38145 * 120.05490 * 179.97438 * 6 5 4 8 8 C 1.38730 * 119.94630 * 359.97438 * 7 6 5 9 9 O 1.35901 * 120.06101 * 179.97438 * 8 7 6 10 10 C 1.42895 * 117.00221 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.47036 * 180.02562 * 10 9 8 12 12 H 1.08992 * 109.47046 * 185.00128 * 11 10 9 13 13 C 1.52997 * 109.47021 * 305.00505 * 11 10 9 14 14 N 1.46904 * 109.46673 * 65.00189 * 11 10 9 15 15 C 1.46902 * 110.99724 * 155.00094 * 14 11 10 16 16 C 1.50693 * 109.47235 * 180.02562 * 15 14 11 17 17 H 1.08004 * 120.00126 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00245 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99998 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00150 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46991 * 59.99845 * 20 18 16 22 22 H 1.48500 * 109.47115 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47002 * 299.99807 * 20 18 16 24 24 C 1.38735 * 119.88860 * 0.27900 * 8 7 6 25 25 C 1.38150 * 119.93781 * 359.42142 * 24 8 7 26 26 H 1.09001 * 109.46730 * 60.00653 * 1 2 3 27 27 H 1.09000 * 109.46765 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47206 * 300.00524 * 1 2 3 29 29 H 1.08994 * 109.47514 * 59.99521 * 3 2 1 30 30 H 1.09003 * 109.46788 * 299.99313 * 3 2 1 31 31 H 1.08998 * 109.47155 * 59.98927 * 4 3 2 32 32 H 1.09005 * 109.46396 * 299.99772 * 4 3 2 33 33 H 1.07997 * 119.97073 * 0.02562 * 6 5 4 34 34 H 1.08001 * 120.02762 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.46798 * 60.00452 * 10 9 8 36 36 H 1.08993 * 109.47318 * 299.99917 * 10 9 8 37 37 H 1.09002 * 109.46905 * 179.97438 * 13 11 10 38 38 H 1.09004 * 109.47446 * 299.99458 * 13 11 10 39 39 H 1.08992 * 109.47518 * 59.99913 * 13 11 10 40 40 H 1.00899 * 110.99893 * 278.95142 * 14 11 10 41 41 H 1.09004 * 109.46968 * 299.99986 * 15 14 11 42 42 H 1.09002 * 109.47067 * 59.99527 * 15 14 11 43 43 H 0.97004 * 120.00434 * 180.02562 * 19 18 16 44 44 H 1.07999 * 120.03086 * 179.72007 * 24 8 7 45 45 H 1.08002 * 119.97019 * 180.27457 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1483 2.5614 -0.0013 6 6 4.4295 3.1923 1.1966 7 6 4.9918 4.4541 1.1987 8 6 5.2749 5.0881 -0.0023 9 8 5.8277 6.3296 -0.0030 10 6 6.0926 6.9212 -1.2765 11 6 6.7099 8.3069 -1.0767 12 1 6.8299 8.7941 -2.0442 13 6 5.7918 9.1513 -0.1907 14 7 8.0224 8.1696 -0.4313 15 6 8.8842 9.3182 -0.7415 16 6 10.2189 9.1421 -0.0644 17 1 10.4080 8.2649 0.5367 18 6 11.1983 10.1013 -0.2113 19 7 10.9679 11.1698 -0.9427 20 14 12.8526 9.8834 0.6287 21 1 13.4951 8.6369 0.1405 22 1 13.7237 11.0444 0.3150 23 1 12.6541 9.7955 2.0977 24 6 4.9870 4.4552 -1.2029 25 6 4.4304 3.1908 -1.1996 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8901 31 1 3.8568 0.6439 -0.8907 32 1 3.8574 0.6437 0.8892 33 1 4.2101 2.6978 2.1313 34 1 5.2109 4.9466 2.1346 35 1 5.1608 7.0152 -1.8343 36 1 6.7869 6.2913 -1.8324 37 1 6.2318 10.1382 -0.0480 38 1 4.8178 9.2531 -0.6695 39 1 5.6718 8.6640 0.7768 40 1 7.9244 8.0500 0.5658 41 1 9.0299 9.3824 -1.8198 42 1 8.4126 10.2334 -0.3835 43 1 11.6571 11.8445 -1.0464 44 1 5.2023 4.9485 -2.1392 45 1 4.2102 2.6958 -2.1339 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825722360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:40 Heat of formation + Delta-G solvation = -73.864541 kcal Electronic energy + Delta-G solvation = -22455.615162 eV Core-core repulsion = 19051.944716 eV Total energy + Delta-G solvation = -3403.670446 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.17358 -38.52148 -37.69512 -35.92022 -33.12513 -32.63246 -31.12018 -30.09652 -28.55611 -26.76723 -26.24618 -25.86773 -23.46347 -22.92325 -21.74597 -21.14329 -19.99396 -18.09048 -16.86615 -16.63132 -16.34787 -15.70764 -15.62303 -15.47407 -15.04495 -14.86423 -14.38387 -14.04441 -13.77439 -13.69119 -13.57872 -13.18639 -12.94432 -12.66777 -12.33243 -12.02051 -11.84145 -11.70416 -11.58182 -11.42857 -11.28676 -11.24464 -10.87735 -10.73118 -10.67741 -10.52773 -10.48694 -10.02263 -9.84938 -9.19507 -9.05567 -8.48325 -8.04900 -7.29513 -6.03137 -4.04819 1.29097 1.35507 3.34410 3.36435 3.37862 3.41003 3.41507 3.76476 4.43181 4.61243 4.76193 4.81088 4.84308 4.90384 4.97586 5.01465 5.07386 5.16085 5.19465 5.27953 5.29055 5.32787 5.35922 5.42147 5.51607 5.67275 5.71296 5.74149 5.77521 5.92311 5.97184 6.20312 6.25208 6.32618 6.35586 6.52185 6.58876 6.76965 6.78755 7.22665 7.42960 7.57131 7.78662 8.12069 8.40175 8.61044 9.04359 9.60043 11.07811 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.032707 B = 0.002244 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.890084 B =12474.939626 C =12910.031549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.065 3.935 4 C -0.070 4.070 5 C -0.136 4.136 6 C -0.074 4.074 7 C -0.155 4.155 8 C 0.144 3.856 9 O -0.302 6.302 10 C 0.073 3.927 11 C 0.084 3.916 12 H 0.090 0.910 13 C -0.177 4.177 14 N -0.682 5.682 15 C 0.193 3.807 16 C -0.514 4.514 17 H 0.062 0.938 18 C 0.056 3.944 19 N -0.899 5.899 20 Si 0.900 3.100 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.210 4.210 25 C -0.073 4.073 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.336 0.664 41 H 0.027 0.973 42 H -0.012 1.012 43 H 0.262 0.738 44 H 0.129 0.871 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.521 -17.533 0.684 27.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.011 4.011 4 C -0.107 4.107 5 C -0.137 4.137 6 C -0.092 4.092 7 C -0.174 4.174 8 C 0.098 3.902 9 O -0.214 6.214 10 C -0.003 4.003 11 C -0.027 4.027 12 H 0.108 0.892 13 C -0.236 4.236 14 N -0.312 5.312 15 C 0.067 3.933 16 C -0.553 4.553 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.727 3.273 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.229 4.229 25 C -0.091 4.091 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.153 0.847 41 H 0.045 0.955 42 H 0.006 0.994 43 H 0.071 0.929 44 H 0.146 0.854 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.983 -17.772 0.264 26.744 hybrid contribution 0.304 0.985 0.628 1.207 sum -19.678 -16.788 0.892 25.882 Atomic orbital electron populations 1.22733 0.81002 1.02694 1.00039 1.87855 1.19739 1.28362 1.95469 1.22584 0.93740 0.84282 1.00512 1.20334 0.92576 0.93863 1.03934 1.19471 1.04309 0.96551 0.93322 1.20810 0.97089 0.93803 0.97534 1.20447 1.04494 0.95819 0.96611 1.19143 0.92023 0.85198 0.93885 1.86125 1.75428 1.27127 1.32749 1.23080 0.98572 0.95369 0.83269 1.21589 0.90612 0.91154 0.99385 0.89229 1.22423 0.99372 1.00930 1.00883 1.60751 1.09295 1.45663 1.15487 1.19595 0.91029 0.85834 0.96875 1.21152 0.97881 1.05755 1.30504 0.92015 1.24984 0.98940 0.95111 0.95527 1.69949 1.34322 1.09875 1.39651 0.86538 0.83378 0.77497 0.79853 1.20170 1.21364 1.20259 1.21295 1.06650 0.97464 0.97487 1.20800 0.96862 0.93980 0.97447 0.94077 0.89653 0.94064 0.93123 0.93194 0.90420 0.90359 0.85650 0.85164 0.92742 0.91305 0.92245 0.93300 0.92044 0.84674 0.95533 0.99379 0.92889 0.85355 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.40 -3.67 10.70 -35.23 -0.38 -4.05 16 3 C 0.07 0.54 5.92 37.16 0.22 0.76 16 4 C -0.07 -0.59 5.71 -27.89 -0.16 -0.75 16 5 C -0.14 -1.38 5.13 -104.61 -0.54 -1.91 16 6 C -0.07 -0.78 9.69 -39.60 -0.38 -1.16 16 7 C -0.16 -1.91 9.99 -39.43 -0.39 -2.31 16 8 C 0.14 1.98 6.69 -39.22 -0.26 1.72 16 9 O -0.30 -4.65 9.20 -19.43 -0.18 -4.83 16 10 C 0.07 1.06 4.58 37.16 0.17 1.23 16 11 C 0.08 1.44 2.99 -67.71 -0.20 1.24 16 12 H 0.09 1.54 7.80 -51.93 -0.40 1.14 16 13 C -0.18 -2.80 8.96 37.16 0.33 -2.46 16 14 N -0.68 -14.58 6.19 -107.99 -0.67 -15.25 16 15 C 0.19 5.02 5.24 -4.98 -0.03 5.00 16 16 C -0.51 -14.66 9.32 -34.44 -0.32 -14.98 16 17 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 20 Si 0.90 21.87 29.54 -169.99 -5.02 16.84 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C -0.21 -2.55 9.04 -39.43 -0.36 -2.90 16 25 C -0.07 -0.77 9.69 -39.61 -0.38 -1.15 16 26 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.05 0.66 7.65 -51.93 -0.40 0.26 16 36 H 0.07 1.03 7.68 -51.93 -0.40 0.63 16 37 H 0.06 1.03 7.45 -51.93 -0.39 0.64 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.97 7.55 -51.93 -0.39 0.58 16 40 H 0.34 7.18 8.46 -39.29 -0.33 6.85 16 41 H 0.03 0.74 8.06 -51.93 -0.42 0.32 16 42 H -0.01 -0.32 7.44 -51.93 -0.39 -0.70 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.13 1.42 6.30 -52.49 -0.33 1.09 16 45 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 373.35 15.07 5.63 5.63 Total: -1.00 -31.06 373.35 -8.81 -39.86 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.64 Total: 2.75 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -1.29 Total: -14.88 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.07 Total: -41.33 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.56 Total: -8.88 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.06 -8.81 -39.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825722360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.000 kcal (2) G-P(sol) polarization free energy of solvation -31.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds