Wall clock time and date at job start Tue Mar 31 2020 06:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99724 * 2 1 4 4 C 1.53003 * 109.47117 * 180.02562 * 3 2 1 5 5 C 1.50691 * 109.47186 * 179.97438 * 4 3 2 6 6 C 1.38272 * 119.94350 * 89.99705 * 5 4 3 7 7 C 1.38145 * 120.05490 * 179.97438 * 6 5 4 8 8 C 1.38730 * 119.94630 * 359.97438 * 7 6 5 9 9 O 1.35901 * 120.06101 * 179.97438 * 8 7 6 10 10 C 1.42895 * 117.00221 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.47036 * 180.02562 * 10 9 8 12 12 H 1.08992 * 109.47046 * 185.00128 * 11 10 9 13 13 C 1.52997 * 109.47021 * 305.00505 * 11 10 9 14 14 N 1.46904 * 109.46673 * 65.00189 * 11 10 9 15 15 C 1.46902 * 110.99724 * 155.00094 * 14 11 10 16 16 C 1.50693 * 109.47235 * 180.02562 * 15 14 11 17 17 H 1.08004 * 120.00126 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00245 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99998 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00150 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46991 * 59.99845 * 20 18 16 22 22 H 1.48500 * 109.47115 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47002 * 299.99807 * 20 18 16 24 24 C 1.38735 * 119.88860 * 0.27900 * 8 7 6 25 25 C 1.38150 * 119.93781 * 359.42142 * 24 8 7 26 26 H 1.09001 * 109.46730 * 60.00653 * 1 2 3 27 27 H 1.09000 * 109.46765 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47206 * 300.00524 * 1 2 3 29 29 H 1.08994 * 109.47514 * 59.99521 * 3 2 1 30 30 H 1.09003 * 109.46788 * 299.99313 * 3 2 1 31 31 H 1.08998 * 109.47155 * 59.98927 * 4 3 2 32 32 H 1.09005 * 109.46396 * 299.99772 * 4 3 2 33 33 H 1.07997 * 119.97073 * 0.02562 * 6 5 4 34 34 H 1.08001 * 120.02762 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.46798 * 60.00452 * 10 9 8 36 36 H 1.08993 * 109.47318 * 299.99917 * 10 9 8 37 37 H 1.09002 * 109.46905 * 179.97438 * 13 11 10 38 38 H 1.09004 * 109.47446 * 299.99458 * 13 11 10 39 39 H 1.08992 * 109.47518 * 59.99913 * 13 11 10 40 40 H 1.00899 * 110.99893 * 278.95142 * 14 11 10 41 41 H 1.09004 * 109.46968 * 299.99986 * 15 14 11 42 42 H 1.09002 * 109.47067 * 59.99527 * 15 14 11 43 43 H 0.97004 * 120.00434 * 180.02562 * 19 18 16 44 44 H 1.07999 * 120.03086 * 179.72007 * 24 8 7 45 45 H 1.08002 * 119.97019 * 180.27457 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1483 2.5614 -0.0013 6 6 4.4295 3.1923 1.1966 7 6 4.9918 4.4541 1.1987 8 6 5.2749 5.0881 -0.0023 9 8 5.8277 6.3296 -0.0030 10 6 6.0926 6.9212 -1.2765 11 6 6.7099 8.3069 -1.0767 12 1 6.8299 8.7941 -2.0442 13 6 5.7918 9.1513 -0.1907 14 7 8.0224 8.1696 -0.4313 15 6 8.8842 9.3182 -0.7415 16 6 10.2189 9.1421 -0.0644 17 1 10.4080 8.2649 0.5367 18 6 11.1983 10.1013 -0.2113 19 7 10.9679 11.1698 -0.9427 20 14 12.8526 9.8834 0.6287 21 1 13.4951 8.6369 0.1405 22 1 13.7237 11.0444 0.3150 23 1 12.6541 9.7955 2.0977 24 6 4.9870 4.4552 -1.2029 25 6 4.4304 3.1908 -1.1996 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8901 31 1 3.8568 0.6439 -0.8907 32 1 3.8574 0.6437 0.8892 33 1 4.2101 2.6978 2.1313 34 1 5.2109 4.9466 2.1346 35 1 5.1608 7.0152 -1.8343 36 1 6.7869 6.2913 -1.8324 37 1 6.2318 10.1382 -0.0480 38 1 4.8178 9.2531 -0.6695 39 1 5.6718 8.6640 0.7768 40 1 7.9244 8.0500 0.5658 41 1 9.0299 9.3824 -1.8198 42 1 8.4126 10.2334 -0.3835 43 1 11.6571 11.8445 -1.0464 44 1 5.2023 4.9485 -2.1392 45 1 4.2102 2.6958 -2.1339 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825722360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:40 Heat of formation + Delta-G solvation = -93.167172 kcal Electronic energy + Delta-G solvation = -22456.452187 eV Core-core repulsion = 19051.944716 eV Total energy + Delta-G solvation = -3404.507471 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.13716 -39.36740 -38.55531 -37.39837 -34.91016 -33.72848 -32.06194 -31.70188 -29.35399 -27.94224 -27.78032 -26.90735 -24.21093 -24.10099 -23.52181 -22.10305 -21.22699 -19.10789 -18.57972 -17.49631 -17.21397 -16.89334 -16.77677 -16.51072 -16.16468 -15.84064 -15.73573 -15.40280 -15.08069 -14.95661 -14.44117 -14.23984 -14.06052 -13.81683 -13.55209 -13.51954 -13.18427 -12.98510 -12.68299 -12.57939 -12.45896 -12.36652 -12.20792 -12.14182 -12.05432 -11.86058 -11.63468 -11.56325 -11.23842 -10.66130 -10.60943 -9.91514 -9.08868 -8.97889 -8.22579 -6.33231 0.42937 0.46947 1.40459 1.43786 1.51817 2.34574 2.39721 2.69224 2.99438 3.10493 3.49650 3.80424 3.96022 3.98644 4.10187 4.13599 4.19183 4.26075 4.36543 4.37973 4.47826 4.51608 4.54321 4.57187 4.58831 4.64281 4.73568 4.86367 4.87990 4.93831 4.96387 5.08294 5.11605 5.16213 5.26026 5.34302 5.38216 5.47748 5.61361 5.70246 5.90468 6.02738 6.22996 6.44870 6.56251 6.72128 6.88799 7.37330 8.88333 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.032707 B = 0.002244 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.890084 B =12474.939626 C =12910.031549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.067 3.933 4 C -0.066 4.066 5 C -0.130 4.130 6 C -0.074 4.074 7 C -0.168 4.168 8 C 0.115 3.885 9 O -0.321 6.321 10 C 0.083 3.917 11 C 0.079 3.921 12 H 0.086 0.914 13 C -0.167 4.167 14 N -0.682 5.682 15 C 0.209 3.791 16 C -0.538 4.538 17 H 0.060 0.940 18 C 0.003 3.997 19 N -0.932 5.932 20 Si 0.971 3.029 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.268 1.268 24 C -0.217 4.217 25 C -0.076 4.076 26 H 0.048 0.952 27 H 0.097 0.903 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.148 0.852 34 H 0.130 0.870 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.335 0.665 41 H 0.002 0.998 42 H -0.034 1.034 43 H 0.265 0.735 44 H 0.136 0.864 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.343 -19.279 1.003 28.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.010 4.010 4 C -0.103 4.103 5 C -0.131 4.131 6 C -0.092 4.092 7 C -0.187 4.187 8 C 0.070 3.930 9 O -0.235 6.235 10 C 0.007 3.993 11 C -0.032 4.032 12 H 0.104 0.896 13 C -0.226 4.226 14 N -0.312 5.312 15 C 0.082 3.918 16 C -0.576 4.576 17 H 0.078 0.922 18 C -0.196 4.196 19 N -0.572 5.572 20 Si 0.795 3.205 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.193 1.193 24 C -0.235 4.235 25 C -0.094 4.094 26 H 0.066 0.934 27 H 0.115 0.885 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.166 0.834 34 H 0.148 0.852 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.153 0.847 41 H 0.020 0.980 42 H -0.017 1.017 43 H 0.074 0.926 44 H 0.154 0.846 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.835 -19.540 0.583 28.570 hybrid contribution 0.439 1.438 0.516 1.590 sum -20.396 -18.102 1.100 27.293 Atomic orbital electron populations 1.22915 0.79602 1.03798 1.00764 1.87817 1.21368 1.28822 1.95612 1.22560 0.93410 0.84158 1.00852 1.20312 0.92827 0.92794 1.04395 1.19701 1.03256 0.97035 0.93065 1.21081 0.96231 0.93096 0.98795 1.20630 1.05047 0.96653 0.96352 1.19399 0.93568 0.84995 0.95068 1.86067 1.76316 1.28310 1.32816 1.22883 0.99549 0.93339 0.83498 1.21719 0.88980 0.93517 0.98978 0.89556 1.22291 1.00218 0.99230 1.00812 1.60641 1.11505 1.43433 1.15627 1.19224 0.91245 0.86506 0.94855 1.21520 0.99227 1.05938 1.30932 0.92158 1.25915 1.02980 0.94632 0.96042 1.70072 1.35702 1.10649 1.40735 0.85414 0.78350 0.77712 0.78986 1.19459 1.20635 1.19264 1.21449 1.06749 0.98130 0.97222 1.21088 0.96164 0.93477 0.98653 0.93350 0.88476 0.93330 0.92784 0.92876 0.90019 0.89905 0.83448 0.85186 0.89747 0.91952 0.94386 0.90437 0.92139 0.84741 0.97985 1.01683 0.92625 0.84647 0.83940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.51 16 2 O -0.42 -6.94 10.70 -148.98 -1.59 -8.54 16 3 C 0.07 0.96 5.92 71.98 0.43 1.39 16 4 C -0.07 -0.97 5.71 29.85 0.17 -0.80 16 5 C -0.13 -2.36 5.13 -19.85 -0.10 -2.46 16 6 C -0.07 -1.42 9.69 22.26 0.22 -1.21 16 7 C -0.17 -4.02 9.99 22.37 0.22 -3.80 16 8 C 0.12 3.09 6.69 22.51 0.15 3.24 16 9 O -0.32 -9.80 9.20 -92.44 -0.85 -10.65 16 10 C 0.08 2.36 4.58 71.98 0.33 2.69 16 11 C 0.08 2.71 2.99 44.92 0.13 2.84 16 12 H 0.09 3.02 7.80 -2.39 -0.02 3.00 16 13 C -0.17 -5.24 8.96 71.98 0.65 -4.60 16 14 N -0.68 -29.90 6.19 -495.57 -3.07 -32.96 16 15 C 0.21 11.28 5.24 85.55 0.45 11.73 16 16 C -0.54 -31.25 9.32 25.60 0.24 -31.01 16 17 H 0.06 3.44 7.81 -2.91 -0.02 3.42 16 18 C 0.00 0.15 5.46 84.65 0.46 0.62 16 19 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 20 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 C -0.22 -4.96 9.04 22.37 0.20 -4.76 16 25 C -0.08 -1.45 9.69 22.25 0.22 -1.23 16 26 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 32 H 0.08 1.16 8.09 -2.38 -0.02 1.14 16 33 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 35 H 0.08 1.90 7.65 -2.39 -0.02 1.88 16 36 H 0.06 1.84 7.68 -2.39 -0.02 1.82 16 37 H 0.04 1.34 7.45 -2.39 -0.02 1.32 16 38 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 39 H 0.06 1.91 7.55 -2.39 -0.02 1.89 16 40 H 0.34 14.69 8.46 -89.69 -0.76 13.93 16 41 H 0.00 0.12 8.06 -2.38 -0.02 0.10 16 42 H -0.03 -1.98 7.44 -2.39 -0.02 -2.00 16 43 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 44 H 0.14 2.79 6.30 -2.91 -0.02 2.77 16 45 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -67.01 373.35 2.00 -65.01 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.20 Total: 22.25 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: 5.01 Total: -25.84 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -2.78 Total: -89.16 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -2.45 Total: -19.19 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -67.01 2.00 -65.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825722360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.162 kcal (2) G-P(sol) polarization free energy of solvation -67.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds