Wall clock time and date at job start Tue Mar 31 2020 06:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00082 * 2 1 4 4 C 1.52998 * 109.47183 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47452 * 179.97438 * 4 3 2 6 6 C 1.38268 * 119.94274 * 269.72728 * 5 4 3 7 7 C 1.38149 * 120.05738 * 180.27561 * 6 5 4 8 8 C 1.38729 * 119.94108 * 0.02562 * 7 6 5 9 9 O 1.35901 * 120.05774 * 179.97438 * 8 7 6 10 10 C 1.42896 * 116.99532 * 0.02791 * 9 8 7 11 11 C 1.53007 * 109.47074 * 179.97438 * 10 9 8 12 12 H 1.08994 * 109.47266 * 174.99945 * 11 10 9 13 13 C 1.52996 * 109.47080 * 54.99643 * 11 10 9 14 14 N 1.46908 * 109.46585 * 294.99850 * 11 10 9 15 15 C 1.46904 * 110.99209 * 205.00014 * 14 11 10 16 16 C 1.50706 * 109.46602 * 180.02562 * 15 14 11 17 17 H 1.08003 * 119.99633 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99874 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99960 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99941 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47190 * 90.00586 * 20 18 16 22 22 H 1.48499 * 109.47476 * 210.00419 * 20 18 16 23 23 H 1.48499 * 109.47355 * 330.00416 * 20 18 16 24 24 C 1.38737 * 119.89055 * 359.97438 * 8 7 6 25 25 C 1.38142 * 119.94357 * 0.02562 * 24 8 7 26 26 H 1.09010 * 109.46803 * 300.00114 * 1 2 3 27 27 H 1.08995 * 109.47469 * 59.99664 * 1 2 3 28 28 H 1.08993 * 109.47645 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47327 * 60.00139 * 3 2 1 30 30 H 1.09005 * 109.47297 * 300.00007 * 3 2 1 31 31 H 1.09002 * 109.47229 * 60.00265 * 4 3 2 32 32 H 1.08997 * 109.47537 * 300.00413 * 4 3 2 33 33 H 1.08005 * 119.97210 * 0.24927 * 6 5 4 34 34 H 1.07998 * 120.03203 * 179.97438 * 7 6 5 35 35 H 1.09003 * 109.47369 * 299.99418 * 10 9 8 36 36 H 1.08993 * 109.47840 * 59.99890 * 10 9 8 37 37 H 1.09008 * 109.47447 * 300.00174 * 13 11 10 38 38 H 1.08998 * 109.47438 * 60.00229 * 13 11 10 39 39 H 1.08998 * 109.46923 * 180.02562 * 13 11 10 40 40 H 1.00899 * 110.99890 * 81.04995 * 14 11 10 41 41 H 1.08999 * 109.47410 * 299.99444 * 15 14 11 42 42 H 1.08997 * 109.47292 * 60.00167 * 15 14 11 43 43 H 0.97002 * 119.99809 * 179.97438 * 19 18 16 44 44 H 1.08001 * 120.03029 * 179.97438 * 24 8 7 45 45 H 1.07997 * 119.97354 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1484 2.5613 -0.0013 6 6 4.4338 3.1891 -1.1997 7 6 5.0011 4.4488 -1.2030 8 6 5.2848 5.0836 -0.0025 9 8 5.8433 6.3225 -0.0030 10 6 6.1112 6.9127 -1.2766 11 6 6.7338 8.2961 -1.0768 12 1 7.0196 8.7090 -2.0441 13 6 7.9731 8.1740 -0.1880 14 7 5.7561 9.1848 -0.4345 15 6 6.0403 10.5921 -0.7455 16 6 5.0195 11.4717 -0.0705 17 1 4.2382 11.0293 0.5298 18 6 5.0837 12.8409 -0.2185 19 7 6.0354 13.3794 -0.9491 20 14 3.8180 13.9311 0.6176 21 1 4.3026 14.3040 1.9709 22 1 3.6121 15.1599 -0.1903 23 1 2.5332 13.1961 0.7370 24 6 4.9975 4.4515 1.1986 25 6 4.4303 3.1919 1.1965 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8567 0.6439 -0.8909 32 1 3.8574 0.6435 0.8890 33 1 4.2135 2.6942 -2.1340 34 1 5.2242 4.9386 -2.1393 35 1 6.8029 6.2795 -1.8322 36 1 5.1802 7.0109 -1.8347 37 1 7.6873 7.7610 0.7795 38 1 8.6985 7.5146 -0.6645 39 1 8.4163 9.1595 -0.0453 40 1 5.7299 9.0330 0.5627 41 1 7.0363 10.8499 -0.3855 42 1 5.9935 10.7424 -1.8241 43 1 6.0804 14.3428 -1.0535 44 1 5.2178 4.9434 2.1345 45 1 4.2068 2.6993 2.1312 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825722362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:42 Heat of formation + Delta-G solvation = -74.053809 kcal Electronic energy + Delta-G solvation = -22490.989209 eV Core-core repulsion = 19087.310556 eV Total energy + Delta-G solvation = -3403.678653 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.17236 -38.50271 -37.68180 -35.92071 -33.12125 -32.63278 -31.12017 -30.09778 -28.54180 -26.75443 -26.22907 -25.87078 -23.44582 -22.92303 -21.75152 -21.14024 -19.99382 -18.08998 -16.83665 -16.62653 -16.33251 -15.69437 -15.61978 -15.47230 -15.02656 -14.86417 -14.38367 -14.04861 -13.75639 -13.70387 -13.58126 -13.17317 -12.88436 -12.70073 -12.35288 -11.98314 -11.81909 -11.67366 -11.64270 -11.39891 -11.29378 -11.23333 -10.86629 -10.75590 -10.68341 -10.51015 -10.48874 -9.98835 -9.85835 -9.18448 -9.05550 -8.49654 -8.04844 -7.29880 -6.03917 -4.05490 1.29164 1.35554 3.31703 3.36787 3.37653 3.42626 3.43197 3.77037 4.42551 4.62168 4.76581 4.84735 4.85739 4.90305 5.00958 5.02011 5.11481 5.17601 5.21466 5.28321 5.32123 5.32377 5.36605 5.42316 5.52042 5.67410 5.71711 5.74134 5.77473 5.92210 5.97218 6.20500 6.25301 6.32739 6.35640 6.52241 6.59068 6.77052 6.81661 7.22312 7.42608 7.57127 7.78272 8.11452 8.39632 8.60546 9.03980 9.59417 11.07112 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019367 B = 0.002466 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.427953 B =11353.945826 C =12307.037748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.396 6.396 3 C 0.064 3.936 4 C -0.069 4.069 5 C -0.136 4.136 6 C -0.073 4.073 7 C -0.210 4.210 8 C 0.144 3.856 9 O -0.302 6.302 10 C 0.073 3.927 11 C 0.084 3.916 12 H 0.090 0.910 13 C -0.177 4.177 14 N -0.682 5.682 15 C 0.193 3.807 16 C -0.513 4.513 17 H 0.062 0.938 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.899 3.101 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 C -0.155 4.155 25 C -0.074 4.074 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.336 0.664 41 H -0.012 1.012 42 H 0.027 0.973 43 H 0.261 0.739 44 H 0.130 0.870 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.935 -24.983 0.705 25.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.315 6.315 3 C -0.012 4.012 4 C -0.106 4.106 5 C -0.137 4.137 6 C -0.091 4.091 7 C -0.229 4.229 8 C 0.097 3.903 9 O -0.214 6.214 10 C -0.003 4.003 11 C -0.027 4.027 12 H 0.108 0.892 13 C -0.236 4.236 14 N -0.312 5.312 15 C 0.066 3.934 16 C -0.552 4.552 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.727 3.273 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.174 4.174 25 C -0.092 4.092 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.153 0.847 41 H 0.006 0.994 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.148 0.852 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.172 -24.882 0.282 25.231 hybrid contribution -0.057 1.167 0.630 1.327 sum -4.229 -23.716 0.911 24.107 Atomic orbital electron populations 1.22733 0.80951 1.02664 1.00134 1.87840 1.19788 1.28372 1.95490 1.22591 0.93665 0.84289 1.00670 1.20330 0.92681 0.93804 1.03812 1.19477 1.04255 0.96610 0.93321 1.20802 0.96780 0.94073 0.97445 1.21292 1.06685 0.97419 0.97488 1.19143 0.92269 0.84962 0.93886 1.86126 1.75122 1.27436 1.32741 1.23080 1.00060 0.93877 0.83276 1.21591 0.90802 0.90966 0.99387 0.89229 1.22423 0.98490 1.01822 1.00876 1.60755 1.47531 1.07347 1.15576 1.19602 0.95102 0.81796 0.96865 1.21186 1.12693 0.90835 1.30453 0.91985 1.24990 0.95970 0.98143 0.95533 1.69961 1.32799 1.11368 1.39666 0.86482 0.81760 0.79845 0.79226 1.20726 1.21262 1.19780 1.20448 1.04502 0.95804 0.96611 1.20807 0.97032 0.93869 0.97535 0.94021 0.94026 0.89673 0.93046 0.93105 0.90482 0.90414 0.86067 0.85354 0.92712 0.91335 0.92039 0.93276 0.92248 0.84679 0.99374 0.95525 0.92940 0.85163 0.85652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.40 -3.80 10.70 -35.23 -0.38 -4.18 16 3 C 0.06 0.56 5.92 37.16 0.22 0.78 16 4 C -0.07 -0.59 5.71 -27.88 -0.16 -0.75 16 5 C -0.14 -1.38 5.14 -104.60 -0.54 -1.91 16 6 C -0.07 -0.77 9.69 -39.60 -0.38 -1.15 16 7 C -0.21 -2.54 9.04 -39.43 -0.36 -2.90 16 8 C 0.14 1.98 6.69 -39.22 -0.26 1.72 16 9 O -0.30 -4.65 9.20 -19.43 -0.18 -4.83 16 10 C 0.07 1.06 4.58 37.16 0.17 1.23 16 11 C 0.08 1.44 2.99 -67.71 -0.20 1.23 16 12 H 0.09 1.54 7.80 -51.93 -0.40 1.14 16 13 C -0.18 -2.80 8.96 37.16 0.33 -2.47 16 14 N -0.68 -14.56 6.19 -107.98 -0.67 -15.23 16 15 C 0.19 5.00 5.24 -4.97 -0.03 4.98 16 16 C -0.51 -14.59 9.32 -34.44 -0.32 -14.91 16 17 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 20 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 C -0.16 -1.91 9.99 -39.43 -0.39 -2.31 16 25 C -0.07 -0.78 9.69 -39.61 -0.38 -1.16 16 26 H 0.04 0.25 8.14 -51.92 -0.42 -0.17 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.13 1.42 6.30 -52.49 -0.33 1.09 16 35 H 0.05 0.67 7.66 -51.93 -0.40 0.27 16 36 H 0.07 1.02 7.66 -51.93 -0.40 0.62 16 37 H 0.06 0.97 7.55 -51.92 -0.39 0.58 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 1.03 7.45 -51.93 -0.39 0.64 16 40 H 0.34 7.16 8.46 -39.29 -0.33 6.83 16 41 H -0.01 -0.32 7.44 -51.93 -0.39 -0.70 16 42 H 0.03 0.74 8.05 -51.93 -0.42 0.32 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 45 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 373.35 15.07 5.63 5.63 Total: -1.00 -31.02 373.35 -8.81 -39.82 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.64 Total: 2.88 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -1.29 Total: -14.82 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.07 Total: -41.29 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.56 Total: -9.00 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.02 -8.81 -39.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825722362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.231 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds