Wall clock time and date at job start Tue Mar 31 2020 06:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.47485 * 2 1 4 4 C 1.35991 * 117.00516 * 179.97438 * 3 2 1 5 5 C 1.38569 * 120.07120 * 359.72428 * 4 3 2 6 6 C 1.38238 * 120.00002 * 179.70046 * 5 4 3 7 7 C 1.38256 * 120.14371 * 0.59428 * 6 5 4 8 8 C 1.38243 * 120.14601 * 359.68224 * 7 6 5 9 9 C 1.50699 * 119.99992 * 180.02562 * 8 7 6 10 10 N 1.46900 * 109.47072 * 259.97636 * 9 8 7 11 11 C 1.46898 * 111.00180 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47567 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47126 * 300.00591 * 12 11 10 14 14 C 1.53008 * 109.46649 * 60.00423 * 12 11 10 15 15 C 1.50695 * 109.47577 * 180.02562 * 12 11 10 16 16 H 1.08000 * 119.99753 * 1.36318 * 15 12 11 17 17 C 1.37873 * 120.00064 * 181.36652 * 15 12 11 18 18 N 1.31520 * 119.99976 * 193.96510 * 17 15 12 19 19 Si 1.86796 * 120.00289 * 13.95785 * 17 15 12 20 20 H 1.48503 * 109.46577 * 84.56032 * 19 17 15 21 21 H 1.48500 * 109.47366 * 204.55956 * 19 17 15 22 22 H 1.48496 * 109.47105 * 324.56132 * 19 17 15 23 23 C 1.38563 * 120.00055 * 0.02562 * 8 7 6 24 24 O 1.36001 * 120.07265 * 180.02562 * 23 8 7 25 25 H 1.09005 * 109.46658 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46823 * 300.00390 * 1 2 3 27 27 H 1.08994 * 109.46830 * 60.00180 * 1 2 3 28 28 H 1.09003 * 109.46947 * 119.99669 * 2 1 3 29 29 H 1.08992 * 109.47194 * 239.99295 * 2 1 3 30 30 H 1.08003 * 119.99589 * 359.97438 * 5 4 3 31 31 H 1.07993 * 119.92739 * 180.29747 * 6 5 4 32 32 H 1.07996 * 119.93011 * 179.70360 * 7 6 5 33 33 H 1.09000 * 109.47328 * 19.97770 * 9 8 7 34 34 H 1.08998 * 109.47526 * 139.97814 * 9 8 7 35 35 H 1.00907 * 110.99904 * 56.04686 * 10 9 8 36 36 H 1.09006 * 109.47409 * 300.00401 * 11 10 9 37 37 H 1.09005 * 109.47025 * 59.99829 * 11 10 9 38 38 H 1.09005 * 109.47145 * 69.31034 * 13 12 11 39 39 H 1.08999 * 109.46855 * 189.30662 * 13 12 11 40 40 H 1.08992 * 109.46809 * 309.31187 * 13 12 11 41 41 H 1.08992 * 109.47239 * 60.00190 * 14 12 11 42 42 H 1.08996 * 109.46847 * 180.02562 * 14 12 11 43 43 H 1.08999 * 109.46610 * 299.99921 * 14 12 11 44 44 H 0.96991 * 120.00123 * 179.97438 * 18 17 15 45 45 H 0.96698 * 113.99710 * 269.97372 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.2001 0.4276 0.0068 6 6 5.5704 0.6104 0.0011 7 6 6.1004 1.8874 0.0015 8 6 5.2625 2.9869 0.0010 9 6 5.8438 4.3773 0.0009 10 7 5.8099 4.9223 1.3646 11 6 6.3706 6.2795 1.4032 12 6 6.3177 6.8127 2.8363 13 6 4.8646 6.8473 3.3143 14 6 7.1339 5.8975 3.7514 15 6 6.8923 8.2053 2.8758 16 1 7.2384 8.6726 1.9658 17 6 6.9762 8.8827 4.0737 18 7 7.2133 10.1763 4.0825 19 14 6.7530 7.9632 5.6844 20 1 8.0456 7.3550 6.0902 21 1 6.2992 8.9089 6.7355 22 1 5.7370 6.8948 5.5077 23 6 3.8881 2.8106 0.0006 24 8 3.0624 3.8913 -0.0004 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8898 30 1 3.7885 -0.5709 0.0117 31 1 6.2282 -0.2460 0.0012 32 1 7.1714 2.0262 0.0019 33 1 6.8752 4.3399 -0.3499 34 1 5.2582 5.0159 -0.6603 35 1 6.2919 4.3138 2.0093 36 1 7.4057 6.2549 1.0623 37 1 5.7889 6.9316 0.7516 38 1 4.5004 5.8282 3.4438 39 1 4.8075 7.3772 4.2651 40 1 4.2510 7.3612 2.5744 41 1 8.1690 5.8729 3.4109 42 1 7.0958 6.2771 4.7724 43 1 6.7178 4.8905 3.7227 44 1 7.2720 10.6529 4.9252 45 1 2.8230 4.2041 0.8827 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839163346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:55 Heat of formation + Delta-G solvation = -44.942512 kcal Electronic energy + Delta-G solvation = -23833.170867 eV Core-core repulsion = 20430.754574 eV Total energy + Delta-G solvation = -3402.416293 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.53166 -38.35319 -37.10117 -36.40221 -34.17836 -32.10649 -31.67241 -30.27239 -29.06238 -26.28188 -26.10790 -25.01760 -23.99760 -22.95388 -22.49889 -20.90086 -18.83791 -18.31569 -17.63710 -16.53126 -16.37707 -16.02702 -15.63515 -15.49565 -14.92545 -14.40094 -14.05809 -13.99234 -13.63333 -13.28878 -13.08079 -12.91965 -12.80654 -12.46384 -12.35587 -12.17538 -12.06518 -11.89675 -11.79765 -11.56354 -11.17360 -10.96061 -10.89861 -10.40668 -10.29526 -10.03093 -9.99707 -9.81011 -8.97301 -8.76178 -8.54912 -8.35975 -8.18863 -7.89087 -6.06589 -4.02225 1.13092 1.28913 2.97320 3.32245 3.41223 3.45785 3.51063 4.30242 4.45023 4.56579 4.60986 4.66506 4.82020 4.89984 4.98132 5.07332 5.19039 5.26048 5.26654 5.37491 5.47592 5.63020 5.72739 5.80397 5.94460 6.01210 6.09300 6.15286 6.26183 6.27106 6.43456 6.49234 6.59100 6.61579 6.78262 6.82240 6.93163 7.07096 7.16892 7.41386 7.48214 7.61898 7.84023 7.89203 7.93550 8.56642 8.98421 9.59495 11.06945 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023760 B = 0.003385 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.164321 B = 8270.935254 C = 8647.405870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.306 6.306 4 C 0.099 3.901 5 C -0.201 4.201 6 C -0.093 4.093 7 C -0.138 4.138 8 C -0.065 4.065 9 C 0.099 3.901 10 N -0.684 5.684 11 C 0.085 3.915 12 C 0.042 3.958 13 C -0.127 4.127 14 C -0.150 4.150 15 C -0.512 4.512 16 H 0.071 0.929 17 C 0.073 3.927 18 N -0.897 5.897 19 Si 0.885 3.115 20 H -0.289 1.289 21 H -0.307 1.307 22 H -0.246 1.246 23 C 0.102 3.898 24 O -0.481 6.481 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.036 0.964 34 H 0.086 0.914 35 H 0.336 0.664 36 H 0.022 0.978 37 H 0.067 0.933 38 H 0.031 0.969 39 H 0.043 0.957 40 H 0.041 0.959 41 H 0.045 0.955 42 H 0.039 0.961 43 H 0.033 0.967 44 H 0.263 0.737 45 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.094 -22.783 -7.772 25.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.220 6.220 4 C 0.053 3.947 5 C -0.220 4.220 6 C -0.111 4.111 7 C -0.157 4.157 8 C -0.066 4.066 9 C -0.030 4.030 10 N -0.316 5.316 11 C -0.043 4.043 12 C 0.040 3.960 13 C -0.184 4.184 14 C -0.207 4.207 15 C -0.550 4.550 16 H 0.089 0.911 17 C -0.129 4.129 18 N -0.534 5.534 19 Si 0.718 3.282 20 H -0.217 1.217 21 H -0.236 1.236 22 H -0.172 1.172 23 C 0.056 3.944 24 O -0.291 6.291 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.054 0.946 34 H 0.104 0.896 35 H 0.154 0.846 36 H 0.040 0.960 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.072 0.928 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -8.847 -22.274 -8.342 25.377 hybrid contribution 1.083 -0.811 1.386 1.937 sum -7.764 -23.084 -6.956 25.329 Atomic orbital electron populations 1.21765 0.92730 1.02678 1.03711 1.22774 0.95953 0.82347 1.01134 1.86160 1.18517 1.28713 1.88646 1.19448 0.82760 0.93723 0.98773 1.21095 0.94273 0.97552 1.09085 1.20867 0.94186 0.97190 0.98856 1.20935 0.99735 0.91681 1.03340 1.20096 0.91800 0.96226 0.98510 1.20794 0.98299 0.90919 0.92988 1.60642 1.61017 1.04741 1.05174 1.21982 0.95964 0.87060 0.99324 1.18469 0.92777 0.94649 0.90069 1.22069 0.97675 0.98534 1.00118 1.22372 1.00225 0.98056 1.00000 1.20868 1.41515 0.97103 0.95529 0.91062 1.24978 0.94394 0.94354 0.99134 1.69964 1.49481 1.07238 1.26750 0.87304 0.78720 0.79034 0.83171 1.21672 1.23602 1.17172 1.17507 0.88399 0.84014 1.04484 1.84768 1.65994 1.44532 1.33845 0.90502 0.91430 0.91450 0.92205 0.92244 0.85515 0.85756 0.85671 0.94635 0.89588 0.84582 0.96012 0.91478 0.95037 0.93819 0.93982 0.93562 0.94228 0.94786 0.92751 0.75006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.63 16 2 C 0.05 0.44 5.46 37.16 0.20 0.64 16 3 O -0.31 -3.79 9.92 -34.21 -0.34 -4.13 16 4 C 0.10 1.27 6.70 -39.12 -0.26 1.01 16 5 C -0.20 -2.14 9.04 -39.46 -0.36 -2.49 16 6 C -0.09 -0.94 10.04 -39.57 -0.40 -1.34 16 7 C -0.14 -1.58 9.66 -39.57 -0.38 -1.96 16 8 C -0.07 -0.87 5.40 -104.50 -0.56 -1.44 16 9 C 0.10 1.41 5.47 -4.98 -0.03 1.39 16 10 N -0.68 -11.01 5.89 -115.06 -0.68 -11.69 16 11 C 0.08 1.64 4.57 -3.83 -0.02 1.63 16 12 C 0.04 0.93 0.57 -155.66 -0.09 0.84 16 13 C -0.13 -2.76 7.55 37.16 0.28 -2.48 16 14 C -0.15 -3.15 7.37 37.16 0.27 -2.88 16 15 C -0.51 -14.07 8.62 -34.44 -0.30 -14.37 16 16 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 17 C 0.07 2.09 5.32 -17.82 -0.09 2.00 16 18 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 19 Si 0.88 21.93 22.79 -169.99 -3.87 18.06 16 20 H -0.29 -7.11 7.10 56.52 0.40 -6.71 16 21 H -0.31 -7.77 7.11 56.52 0.40 -7.37 16 22 H -0.25 -5.66 4.65 56.52 0.26 -5.39 16 23 C 0.10 1.44 6.69 -39.12 -0.26 1.18 16 24 O -0.48 -7.04 12.52 -34.24 -0.43 -7.47 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.43 7.65 -51.93 -0.40 0.03 16 29 H 0.06 0.43 7.68 -51.93 -0.40 0.03 16 30 H 0.13 1.03 6.30 -52.48 -0.33 0.70 16 31 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 32 H 0.13 1.24 8.03 -52.49 -0.42 0.82 16 33 H 0.04 0.48 8.00 -51.93 -0.42 0.06 16 34 H 0.09 1.31 7.85 -51.93 -0.41 0.90 16 35 H 0.34 5.28 6.76 -39.29 -0.27 5.02 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.03 0.61 7.88 -51.93 -0.41 0.20 16 39 H 0.04 1.01 4.30 -51.93 -0.22 0.79 16 40 H 0.04 0.90 8.12 -51.93 -0.42 0.48 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.04 0.89 2.25 -51.93 -0.12 0.77 16 43 H 0.03 0.61 6.57 -51.93 -0.34 0.27 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.39 4.89 9.06 45.56 0.41 5.30 16 LS Contribution 350.35 15.07 5.28 5.28 Total: -1.00 -31.38 350.35 -7.26 -38.65 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.39 Total: 6.90 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -1.61 Total: -18.91 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.10 Total: -38.37 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.77 Total: -11.61 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -3.87 Total: 18.06 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.38 -7.26 -38.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839163346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.295 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds