Wall clock time and date at job start Tue Mar 31 2020 06:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.47485 * 2 1 4 4 C 1.35991 * 117.00516 * 179.97438 * 3 2 1 5 5 C 1.38569 * 120.07120 * 359.72428 * 4 3 2 6 6 C 1.38238 * 120.00002 * 179.70046 * 5 4 3 7 7 C 1.38256 * 120.14371 * 0.59428 * 6 5 4 8 8 C 1.38243 * 120.14601 * 359.68224 * 7 6 5 9 9 C 1.50699 * 119.99992 * 180.02562 * 8 7 6 10 10 N 1.46900 * 109.47072 * 259.97636 * 9 8 7 11 11 C 1.46898 * 111.00180 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47567 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47126 * 300.00591 * 12 11 10 14 14 C 1.53008 * 109.46649 * 60.00423 * 12 11 10 15 15 C 1.50695 * 109.47577 * 180.02562 * 12 11 10 16 16 H 1.08000 * 119.99753 * 1.36318 * 15 12 11 17 17 C 1.37873 * 120.00064 * 181.36652 * 15 12 11 18 18 N 1.31520 * 119.99976 * 193.96510 * 17 15 12 19 19 Si 1.86796 * 120.00289 * 13.95785 * 17 15 12 20 20 H 1.48503 * 109.46577 * 84.56032 * 19 17 15 21 21 H 1.48500 * 109.47366 * 204.55956 * 19 17 15 22 22 H 1.48496 * 109.47105 * 324.56132 * 19 17 15 23 23 C 1.38563 * 120.00055 * 0.02562 * 8 7 6 24 24 O 1.36001 * 120.07265 * 180.02562 * 23 8 7 25 25 H 1.09005 * 109.46658 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46823 * 300.00390 * 1 2 3 27 27 H 1.08994 * 109.46830 * 60.00180 * 1 2 3 28 28 H 1.09003 * 109.46947 * 119.99669 * 2 1 3 29 29 H 1.08992 * 109.47194 * 239.99295 * 2 1 3 30 30 H 1.08003 * 119.99589 * 359.97438 * 5 4 3 31 31 H 1.07993 * 119.92739 * 180.29747 * 6 5 4 32 32 H 1.07996 * 119.93011 * 179.70360 * 7 6 5 33 33 H 1.09000 * 109.47328 * 19.97770 * 9 8 7 34 34 H 1.08998 * 109.47526 * 139.97814 * 9 8 7 35 35 H 1.00907 * 110.99904 * 56.04686 * 10 9 8 36 36 H 1.09006 * 109.47409 * 300.00401 * 11 10 9 37 37 H 1.09005 * 109.47025 * 59.99829 * 11 10 9 38 38 H 1.09005 * 109.47145 * 69.31034 * 13 12 11 39 39 H 1.08999 * 109.46855 * 189.30662 * 13 12 11 40 40 H 1.08992 * 109.46809 * 309.31187 * 13 12 11 41 41 H 1.08992 * 109.47239 * 60.00190 * 14 12 11 42 42 H 1.08996 * 109.46847 * 180.02562 * 14 12 11 43 43 H 1.08999 * 109.46610 * 299.99921 * 14 12 11 44 44 H 0.96991 * 120.00123 * 179.97438 * 18 17 15 45 45 H 0.96698 * 113.99710 * 269.97372 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.2001 0.4276 0.0068 6 6 5.5704 0.6104 0.0011 7 6 6.1004 1.8874 0.0015 8 6 5.2625 2.9869 0.0010 9 6 5.8438 4.3773 0.0009 10 7 5.8099 4.9223 1.3646 11 6 6.3706 6.2795 1.4032 12 6 6.3177 6.8127 2.8363 13 6 4.8646 6.8473 3.3143 14 6 7.1339 5.8975 3.7514 15 6 6.8923 8.2053 2.8758 16 1 7.2384 8.6726 1.9658 17 6 6.9762 8.8827 4.0737 18 7 7.2133 10.1763 4.0825 19 14 6.7530 7.9632 5.6844 20 1 8.0456 7.3550 6.0902 21 1 6.2992 8.9089 6.7355 22 1 5.7370 6.8948 5.5077 23 6 3.8881 2.8106 0.0006 24 8 3.0624 3.8913 -0.0004 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8898 30 1 3.7885 -0.5709 0.0117 31 1 6.2282 -0.2460 0.0012 32 1 7.1714 2.0262 0.0019 33 1 6.8752 4.3399 -0.3499 34 1 5.2582 5.0159 -0.6603 35 1 6.2919 4.3138 2.0093 36 1 7.4057 6.2549 1.0623 37 1 5.7889 6.9316 0.7516 38 1 4.5004 5.8282 3.4438 39 1 4.8075 7.3772 4.2651 40 1 4.2510 7.3612 2.5744 41 1 8.1690 5.8729 3.4109 42 1 7.0958 6.2771 4.7724 43 1 6.7178 4.8905 3.7227 44 1 7.2720 10.6529 4.9252 45 1 2.8230 4.2041 0.8827 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839163346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:54 Heat of formation + Delta-G solvation = -67.497159 kcal Electronic energy + Delta-G solvation = -23834.148909 eV Core-core repulsion = 20430.754574 eV Total energy + Delta-G solvation = -3403.394336 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.40284 -39.36572 -38.60967 -37.36964 -35.63731 -33.72634 -32.66784 -31.42447 -29.90588 -27.95205 -27.41451 -27.01497 -25.10522 -24.04863 -23.37220 -21.79102 -20.60991 -19.32176 -18.51685 -18.04666 -17.55650 -17.27647 -17.10880 -16.40815 -16.26284 -15.46377 -15.41118 -15.05403 -14.92716 -14.73888 -14.41427 -14.09630 -13.97906 -13.80096 -13.68441 -13.48236 -13.38434 -12.97851 -12.69434 -12.57270 -12.49237 -12.26715 -12.03011 -11.90436 -11.85830 -11.61250 -11.57790 -11.31955 -10.93492 -10.55682 -10.32112 -9.68337 -9.23936 -9.05263 -8.27996 -6.27155 0.24162 0.41990 1.36183 1.39816 1.50693 2.23966 2.37043 2.63107 3.09073 3.38658 3.48256 3.82122 3.98582 4.06482 4.15703 4.21871 4.27946 4.31751 4.38873 4.42019 4.44682 4.56684 4.67030 4.73179 4.83543 4.90429 4.93163 4.94155 4.98737 5.06035 5.13543 5.17808 5.19579 5.29867 5.33254 5.43025 5.55701 5.62326 5.75214 5.78836 5.89512 6.14523 6.36446 6.37424 6.58423 6.80008 6.93818 7.38168 8.89447 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023760 B = 0.003385 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.164321 B = 8270.935254 C = 8647.405870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.330 6.330 4 C 0.086 3.914 5 C -0.196 4.196 6 C -0.086 4.086 7 C -0.141 4.141 8 C -0.078 4.078 9 C 0.105 3.895 10 N -0.676 5.676 11 C 0.099 3.901 12 C 0.037 3.963 13 C -0.121 4.121 14 C -0.147 4.147 15 C -0.513 4.513 16 H 0.028 0.972 17 C 0.015 3.985 18 N -0.950 5.950 19 Si 0.944 3.056 20 H -0.282 1.282 21 H -0.317 1.317 22 H -0.212 1.212 23 C 0.074 3.926 24 O -0.498 6.498 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.142 0.858 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.343 0.657 36 H 0.016 0.984 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.030 0.970 40 H 0.033 0.967 41 H 0.046 0.954 42 H 0.029 0.971 43 H 0.070 0.930 44 H 0.262 0.738 45 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.376 -27.106 -7.215 29.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.245 6.245 4 C 0.040 3.960 5 C -0.215 4.215 6 C -0.104 4.104 7 C -0.160 4.160 8 C -0.079 4.079 9 C -0.023 4.023 10 N -0.308 5.308 11 C -0.030 4.030 12 C 0.036 3.964 13 C -0.179 4.179 14 C -0.204 4.204 15 C -0.552 4.552 16 H 0.046 0.954 17 C -0.182 4.182 18 N -0.590 5.590 19 Si 0.774 3.226 20 H -0.210 1.210 21 H -0.247 1.247 22 H -0.136 1.136 23 C 0.028 3.972 24 O -0.309 6.309 25 H 0.121 0.879 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.171 0.829 31 H 0.175 0.825 32 H 0.159 0.841 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.162 0.838 36 H 0.034 0.966 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -9.139 -26.641 -7.805 29.226 hybrid contribution 1.151 0.494 1.064 1.644 sum -7.988 -26.147 -6.741 28.159 Atomic orbital electron populations 1.21804 0.91843 1.04130 1.02924 1.23080 0.96742 0.80879 1.02338 1.86138 1.18475 1.31201 1.88686 1.19604 0.83409 0.93888 0.99127 1.21448 0.94378 0.98120 1.07545 1.21261 0.94451 0.97693 0.96978 1.21177 1.00375 0.91673 1.02739 1.20005 0.91828 0.95938 1.00150 1.20690 0.98676 0.91537 0.91431 1.60508 1.60467 1.03170 1.06641 1.21634 0.95567 0.88787 0.97037 1.18450 0.93162 0.92284 0.92494 1.21979 0.96945 0.99920 0.99016 1.22288 1.00242 0.99396 0.98483 1.21229 1.40550 0.99583 0.93802 0.95378 1.25828 0.94436 0.94907 1.03007 1.70118 1.52014 1.09259 1.27604 0.86346 0.79783 0.78395 0.78095 1.20967 1.24672 1.13578 1.17803 0.88758 0.84429 1.06181 1.84747 1.66452 1.45263 1.34435 0.87898 0.92168 0.92290 0.90846 0.90991 0.82855 0.82465 0.84062 0.93608 0.91255 0.83793 0.96560 0.93227 0.92191 0.95160 0.94767 0.93486 0.95268 0.91137 0.92869 0.74650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 71.98 0.74 -0.98 16 2 C 0.04 0.63 5.46 71.98 0.39 1.02 16 3 O -0.33 -7.77 9.92 -79.58 -0.79 -8.55 16 4 C 0.09 2.05 6.70 22.57 0.15 2.20 16 5 C -0.20 -3.50 9.04 22.35 0.20 -3.30 16 6 C -0.09 -1.40 10.04 22.27 0.22 -1.18 16 7 C -0.14 -2.79 9.66 22.28 0.22 -2.57 16 8 C -0.08 -1.96 5.40 -19.79 -0.11 -2.06 16 9 C 0.11 2.90 5.47 85.56 0.47 3.37 16 10 N -0.68 -20.62 5.89 -517.93 -3.05 -23.67 16 11 C 0.10 3.79 4.57 86.30 0.39 4.19 16 12 C 0.04 1.63 0.57 -52.93 -0.03 1.60 16 13 C -0.12 -5.09 7.55 71.98 0.54 -4.54 16 14 C -0.15 -5.78 7.37 71.98 0.53 -5.25 16 15 C -0.51 -28.91 8.62 25.60 0.22 -28.69 16 16 H 0.03 1.77 7.99 -2.91 -0.02 1.74 16 17 C 0.01 0.87 5.32 84.65 0.45 1.32 16 18 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 19 Si 0.94 44.98 22.79 68.60 1.56 46.54 16 20 H -0.28 -13.07 7.10 99.48 0.71 -12.36 16 21 H -0.32 -15.52 7.11 99.48 0.71 -14.81 16 22 H -0.21 -8.91 4.65 99.48 0.46 -8.44 16 23 C 0.07 2.02 6.69 22.57 0.15 2.17 16 24 O -0.50 -14.70 12.52 -79.70 -1.00 -15.70 16 25 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.83 7.65 -2.39 -0.02 0.81 16 29 H 0.07 0.83 7.68 -2.39 -0.02 0.81 16 30 H 0.15 1.83 6.30 -2.91 -0.02 1.81 16 31 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.14 2.28 8.03 -2.91 -0.02 2.26 16 33 H 0.05 1.17 8.00 -2.39 -0.02 1.15 16 34 H 0.07 2.13 7.85 -2.39 -0.02 2.11 16 35 H 0.34 9.72 6.76 -89.69 -0.61 9.11 16 36 H 0.02 0.63 8.14 -2.38 -0.02 0.62 16 37 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.06 2.16 7.88 -2.38 -0.02 2.15 16 39 H 0.03 1.33 4.30 -2.39 -0.01 1.32 16 40 H 0.03 1.45 8.12 -2.39 -0.02 1.43 16 41 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.03 1.21 2.25 -2.39 -0.01 1.21 16 43 H 0.07 2.25 6.57 -2.39 -0.02 2.24 16 44 H 0.26 15.74 8.31 -92.72 -0.77 14.97 16 45 H 0.40 10.00 9.06 -74.06 -0.67 9.33 16 Total: -1.00 -70.24 350.35 1.05 -69.18 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: -0.52 Total: 24.88 kcal Atomic # 6 Polarization: -37.25 SS G_CDS: 4.55 Total: -32.70 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -2.75 Total: -83.65 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -1.79 Total: -24.25 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.56 Total: 46.54 kcal Total: -70.24 1.05 -69.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839163346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.688 kcal (2) G-P(sol) polarization free energy of solvation -70.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds