Wall clock time and date at job start Tue Mar 31 2020 06:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35979 * 117.00163 * 179.97438 * 3 2 1 5 5 C 1.38716 * 119.99748 * 359.72941 * 4 3 2 6 6 C 1.38117 * 119.99724 * 179.71772 * 5 4 3 7 7 C 1.38714 * 119.99884 * 0.55358 * 6 5 4 8 8 O 1.35988 * 120.00246 * 179.70017 * 7 6 5 9 9 C 1.38682 * 120.00096 * 359.71782 * 7 6 5 10 10 C 1.50701 * 119.99781 * 179.97438 * 9 7 6 11 11 N 1.46896 * 109.47118 * 285.02104 * 10 9 7 12 12 C 1.46904 * 111.00117 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47255 * 179.97438 * 12 11 10 14 14 C 1.52992 * 109.47330 * 300.00231 * 13 12 11 15 15 C 1.53002 * 109.46938 * 60.00179 * 13 12 11 16 16 C 1.50700 * 109.47051 * 180.02562 * 13 12 11 17 17 H 1.08000 * 119.99936 * 0.02562 * 16 13 12 18 18 C 1.37878 * 120.00241 * 180.02562 * 16 13 12 19 19 N 1.31514 * 119.99589 * 359.97438 * 18 16 13 20 20 Si 1.86792 * 120.00306 * 180.02562 * 18 16 13 21 21 H 1.48504 * 109.47291 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47241 * 119.99916 * 20 18 16 23 23 H 1.48506 * 109.47270 * 239.99906 * 20 18 16 24 24 C 1.38149 * 119.99955 * 0.02562 * 9 7 6 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 30 30 H 1.07995 * 120.00573 * 359.96856 * 5 4 3 31 31 H 1.08000 * 119.99757 * 180.24288 * 6 5 4 32 32 H 0.96706 * 113.99616 * 270.02367 * 8 7 6 33 33 H 1.09000 * 109.47243 * 45.02129 * 10 9 7 34 34 H 1.08997 * 109.47131 * 165.02556 * 10 9 7 35 35 H 1.00898 * 111.00234 * 56.05324 * 11 10 9 36 36 H 1.09001 * 109.46979 * 299.99944 * 12 11 10 37 37 H 1.09007 * 109.46771 * 60.00149 * 12 11 10 38 38 H 1.08997 * 109.47409 * 59.99471 * 14 13 12 39 39 H 1.09002 * 109.47539 * 180.02562 * 14 13 12 40 40 H 1.09007 * 109.47136 * 300.00108 * 14 13 12 41 41 H 1.09001 * 109.47468 * 59.99939 * 15 13 12 42 42 H 1.09002 * 109.46768 * 180.02562 * 15 13 12 43 43 H 1.09001 * 109.47113 * 299.99632 * 15 13 12 44 44 H 0.96998 * 120.00146 * 179.97438 * 19 18 16 45 45 H 1.07997 * 119.99771 * 180.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3544 1.5254 0.0005 5 6 4.1994 0.4253 0.0067 6 6 5.5686 0.6062 0.0014 7 6 6.0988 1.8880 0.0014 8 8 7.4470 2.0662 0.0023 9 6 5.2541 2.9879 0.0009 10 6 5.8302 4.3804 0.0016 11 7 6.3480 4.6955 1.3396 12 6 6.9182 6.0488 1.3783 13 6 7.4453 6.3401 2.7848 14 6 6.2966 6.2418 3.7905 15 6 8.5275 5.3203 3.1452 16 6 8.0297 7.7287 2.8246 17 1 8.0251 8.3421 1.9357 18 6 8.5702 8.2159 3.9957 19 7 8.5752 7.4691 5.0781 20 14 9.2938 9.9373 4.0452 21 1 9.1656 10.5669 2.7063 22 1 8.5630 10.7528 5.0483 23 1 10.7287 9.8604 4.4202 24 6 3.8845 2.8069 0.0009 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7866 -0.5727 0.0116 31 1 6.2265 -0.2503 0.0023 32 1 7.8363 2.1176 0.8861 33 1 6.6409 4.4386 -0.7247 34 1 5.0519 5.0957 -0.2645 35 1 7.0253 4.0089 1.6362 36 1 7.7364 6.1189 0.6615 37 1 6.1471 6.7754 1.1219 38 1 5.8735 5.2377 3.7618 39 1 6.6721 6.4498 4.7925 40 1 5.5256 6.9684 3.5337 41 1 9.3459 5.3903 2.4287 42 1 8.9027 5.5276 4.1474 43 1 8.1044 4.3162 3.1166 44 1 8.9558 7.8116 5.9020 45 1 3.2267 3.6634 0.0001 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839163377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:32 Heat of formation + Delta-G solvation = -65.460007 kcal Electronic energy + Delta-G solvation = -23561.805199 eV Core-core repulsion = 20158.499201 eV Total energy + Delta-G solvation = -3403.305998 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.43917 -38.77696 -36.81768 -35.96517 -34.10011 -32.04858 -31.67786 -30.20005 -28.59302 -25.83306 -25.55924 -25.17186 -23.86384 -22.82052 -22.61674 -20.92454 -18.50632 -18.18498 -17.94001 -16.43816 -16.31479 -15.92027 -15.41405 -15.26963 -14.59761 -14.37305 -14.08309 -13.76104 -13.52200 -13.43686 -13.08107 -12.83414 -12.54281 -12.38841 -12.11738 -11.93798 -11.77672 -11.69522 -11.42873 -11.11631 -10.99993 -10.79308 -10.63901 -10.57293 -10.28377 -10.17262 -10.05225 -9.38237 -9.14186 -8.91257 -8.60540 -8.28456 -8.06424 -7.69925 -5.90489 -4.00614 1.21259 1.28859 3.01085 3.31282 3.39691 3.43367 3.53250 4.30898 4.45160 4.60049 4.62198 4.69676 4.83300 4.91056 5.02324 5.09783 5.20664 5.35225 5.40369 5.45244 5.47794 5.71125 5.73881 5.90823 5.96930 6.13996 6.22336 6.33515 6.40772 6.45641 6.63073 6.71279 6.89306 7.06601 7.16770 7.25823 7.39015 7.47258 7.70059 7.71063 7.76531 7.83887 7.95051 8.21571 8.35287 8.56806 9.00997 9.64433 11.10133 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.026477 B = 0.003007 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.274006 B = 9309.059363 C = 9787.105325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.316 6.316 4 C 0.120 3.880 5 C -0.200 4.200 6 C -0.106 4.106 7 C 0.072 3.928 8 O -0.496 6.496 9 C -0.053 4.053 10 C 0.096 3.904 11 N -0.677 5.677 12 C 0.074 3.926 13 C 0.069 3.931 14 C -0.119 4.119 15 C -0.132 4.132 16 C -0.505 4.505 17 H 0.053 0.947 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.888 3.112 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.286 1.286 24 C -0.121 4.121 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.388 0.612 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.333 0.667 36 H 0.015 0.985 37 H 0.058 0.942 38 H 0.019 0.981 39 H 0.074 0.926 40 H 0.018 0.982 41 H 0.020 0.980 42 H 0.084 0.916 43 H 0.009 0.991 44 H 0.257 0.743 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.758 -16.376 -9.456 21.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.230 6.230 4 C 0.075 3.925 5 C -0.219 4.219 6 C -0.124 4.124 7 C 0.027 3.973 8 O -0.306 6.306 9 C -0.054 4.054 10 C -0.033 4.033 11 N -0.309 5.309 12 C -0.054 4.054 13 C 0.068 3.932 14 C -0.177 4.177 15 C -0.190 4.190 16 C -0.544 4.544 17 H 0.071 0.929 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.717 3.283 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.212 1.212 24 C -0.140 4.140 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.244 0.756 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.152 0.848 36 H 0.034 0.966 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.093 0.907 40 H 0.037 0.963 41 H 0.039 0.961 42 H 0.102 0.898 43 H 0.027 0.973 44 H 0.067 0.933 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.528 -16.014 -9.639 21.960 hybrid contribution 1.434 0.529 0.078 1.530 sum -10.094 -15.485 -9.561 20.810 Atomic orbital electron populations 1.21774 0.92797 1.02742 1.03635 1.22759 0.95849 0.82192 1.01282 1.86093 1.19030 1.29031 1.88839 1.18925 0.82199 0.94004 0.97363 1.21026 0.93654 0.97991 1.09187 1.21131 0.94711 0.96739 0.99839 1.18209 0.83275 0.91507 1.04287 1.84833 1.17132 1.95014 1.33595 1.20044 0.92368 0.95689 0.97299 1.20816 0.99033 0.91224 0.92212 1.60728 1.42347 1.05419 1.22433 1.22198 0.96054 0.87179 0.99945 1.18093 0.92191 0.94215 0.88657 1.21643 0.96795 0.96757 1.02524 1.21840 0.98383 0.95183 1.03600 1.21149 1.38024 0.99101 0.96115 0.92916 1.24886 0.95905 0.97139 0.95696 1.69843 1.45810 1.35991 1.00750 0.86601 0.78750 0.85035 0.77945 1.19946 1.21123 1.21190 1.20210 0.94080 0.94960 1.04748 0.90476 0.91404 0.91529 0.92183 0.92062 0.85448 0.85345 0.75632 0.93965 0.90429 0.84841 0.96631 0.92386 0.96151 0.90743 0.96277 0.96089 0.89779 0.97258 0.93263 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 2 C 0.05 0.44 5.46 37.16 0.20 0.64 16 3 O -0.32 -3.75 10.14 -19.67 -0.20 -3.95 16 4 C 0.12 1.53 6.69 -39.24 -0.26 1.27 16 5 C -0.20 -2.24 9.03 -39.45 -0.36 -2.60 16 6 C -0.11 -1.25 9.98 -39.45 -0.39 -1.64 16 7 C 0.07 0.98 6.55 -39.24 -0.26 0.73 16 8 O -0.50 -6.58 12.45 -19.70 -0.25 -6.83 16 9 C -0.05 -0.76 5.43 -104.49 -0.57 -1.33 16 10 C 0.10 1.50 5.44 -4.98 -0.03 1.47 16 11 N -0.68 -12.13 5.70 -115.06 -0.66 -12.79 16 12 C 0.07 1.55 4.59 -3.82 -0.02 1.54 16 13 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 14 C -0.12 -2.92 8.09 37.15 0.30 -2.62 16 15 C -0.13 -3.08 7.92 37.16 0.29 -2.78 16 16 C -0.51 -13.59 8.01 -34.44 -0.28 -13.87 16 17 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.75 5.15 -17.82 -0.09 1.66 16 19 N -0.88 -24.48 9.35 55.43 0.52 -23.96 16 20 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 C -0.12 -1.67 9.60 -39.45 -0.38 -2.05 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.42 7.67 -51.93 -0.40 0.02 16 29 H 0.06 0.44 7.65 -51.93 -0.40 0.05 16 30 H 0.13 1.10 6.29 -52.49 -0.33 0.77 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.39 4.02 8.40 45.56 0.38 4.40 16 33 H 0.04 0.67 8.00 -51.93 -0.42 0.26 16 34 H 0.08 1.17 7.95 -51.93 -0.41 0.76 16 35 H 0.33 5.74 5.58 -39.29 -0.22 5.52 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 39 H 0.07 1.99 6.07 -51.93 -0.32 1.68 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 43 H 0.01 0.18 6.57 -51.93 -0.34 -0.16 16 44 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 45 H 0.14 1.79 8.00 -52.49 -0.42 1.37 16 LS Contribution 358.26 15.07 5.40 5.40 Total: -1.00 -29.56 358.26 -8.24 -37.80 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.50 Total: 6.79 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -1.54 Total: -18.60 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: -0.14 Total: -36.75 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -0.44 Total: -10.77 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.56 -8.24 -37.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839163377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.661 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds