Wall clock time and date at job start Tue Mar 31 2020 06:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35979 * 117.00163 * 179.97438 * 3 2 1 5 5 C 1.38716 * 119.99748 * 359.72941 * 4 3 2 6 6 C 1.38117 * 119.99724 * 179.71772 * 5 4 3 7 7 C 1.38714 * 119.99884 * 0.55358 * 6 5 4 8 8 O 1.35988 * 120.00246 * 179.70017 * 7 6 5 9 9 C 1.38682 * 120.00096 * 359.71782 * 7 6 5 10 10 C 1.50701 * 119.99781 * 179.97438 * 9 7 6 11 11 N 1.46896 * 109.47118 * 285.02104 * 10 9 7 12 12 C 1.46904 * 111.00117 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47255 * 179.97438 * 12 11 10 14 14 C 1.52992 * 109.47330 * 300.00231 * 13 12 11 15 15 C 1.53002 * 109.46938 * 60.00179 * 13 12 11 16 16 C 1.50700 * 109.47051 * 180.02562 * 13 12 11 17 17 H 1.08000 * 119.99936 * 0.02562 * 16 13 12 18 18 C 1.37878 * 120.00241 * 180.02562 * 16 13 12 19 19 N 1.31514 * 119.99589 * 359.97438 * 18 16 13 20 20 Si 1.86792 * 120.00306 * 180.02562 * 18 16 13 21 21 H 1.48504 * 109.47291 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47241 * 119.99916 * 20 18 16 23 23 H 1.48506 * 109.47270 * 239.99906 * 20 18 16 24 24 C 1.38149 * 119.99955 * 0.02562 * 9 7 6 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 30 30 H 1.07995 * 120.00573 * 359.96856 * 5 4 3 31 31 H 1.08000 * 119.99757 * 180.24288 * 6 5 4 32 32 H 0.96706 * 113.99616 * 270.02367 * 8 7 6 33 33 H 1.09000 * 109.47243 * 45.02129 * 10 9 7 34 34 H 1.08997 * 109.47131 * 165.02556 * 10 9 7 35 35 H 1.00898 * 111.00234 * 56.05324 * 11 10 9 36 36 H 1.09001 * 109.46979 * 299.99944 * 12 11 10 37 37 H 1.09007 * 109.46771 * 60.00149 * 12 11 10 38 38 H 1.08997 * 109.47409 * 59.99471 * 14 13 12 39 39 H 1.09002 * 109.47539 * 180.02562 * 14 13 12 40 40 H 1.09007 * 109.47136 * 300.00108 * 14 13 12 41 41 H 1.09001 * 109.47468 * 59.99939 * 15 13 12 42 42 H 1.09002 * 109.46768 * 180.02562 * 15 13 12 43 43 H 1.09001 * 109.47113 * 299.99632 * 15 13 12 44 44 H 0.96998 * 120.00146 * 179.97438 * 19 18 16 45 45 H 1.07997 * 119.99771 * 180.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3544 1.5254 0.0005 5 6 4.1994 0.4253 0.0067 6 6 5.5686 0.6062 0.0014 7 6 6.0988 1.8880 0.0014 8 8 7.4470 2.0662 0.0023 9 6 5.2541 2.9879 0.0009 10 6 5.8302 4.3804 0.0016 11 7 6.3480 4.6955 1.3396 12 6 6.9182 6.0488 1.3783 13 6 7.4453 6.3401 2.7848 14 6 6.2966 6.2418 3.7905 15 6 8.5275 5.3203 3.1452 16 6 8.0297 7.7287 2.8246 17 1 8.0251 8.3421 1.9357 18 6 8.5702 8.2159 3.9957 19 7 8.5752 7.4691 5.0781 20 14 9.2938 9.9373 4.0452 21 1 9.1656 10.5669 2.7063 22 1 8.5630 10.7528 5.0483 23 1 10.7287 9.8604 4.4202 24 6 3.8845 2.8069 0.0009 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7866 -0.5727 0.0116 31 1 6.2265 -0.2503 0.0023 32 1 7.8363 2.1176 0.8861 33 1 6.6409 4.4386 -0.7247 34 1 5.0519 5.0957 -0.2645 35 1 7.0253 4.0089 1.6362 36 1 7.7364 6.1189 0.6615 37 1 6.1471 6.7754 1.1219 38 1 5.8735 5.2377 3.7618 39 1 6.6721 6.4498 4.7925 40 1 5.5256 6.9684 3.5337 41 1 9.3459 5.3903 2.4287 42 1 8.9027 5.5276 4.1474 43 1 8.1044 4.3162 3.1166 44 1 8.9558 7.8116 5.9020 45 1 3.2267 3.6634 0.0001 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839163377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:31 Heat of formation + Delta-G solvation = -84.032537 kcal Electronic energy + Delta-G solvation = -23562.610565 eV Core-core repulsion = 20158.499201 eV Total energy + Delta-G solvation = -3404.111363 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.36821 -39.72442 -38.49256 -36.93018 -35.66086 -33.32528 -32.68309 -31.60004 -29.56242 -27.49620 -27.28241 -27.06300 -24.96701 -24.02189 -23.56642 -21.87067 -20.34373 -19.15810 -18.89982 -17.86092 -17.40576 -17.02989 -16.92588 -16.38027 -16.25561 -15.59462 -15.28364 -15.12272 -14.68392 -14.36600 -14.19354 -14.05566 -13.93162 -13.65452 -13.30119 -13.17967 -13.00565 -12.91468 -12.83860 -12.60068 -12.47228 -12.41521 -12.17326 -12.10023 -12.06602 -11.51578 -11.30802 -11.29271 -10.94268 -10.59137 -10.33980 -9.95262 -9.20577 -8.97849 -7.96214 -6.12686 0.23307 0.33413 1.41431 1.44956 1.54251 2.24331 2.46836 2.57190 3.26052 3.36391 3.53386 3.79791 3.83618 4.09204 4.11397 4.17082 4.24516 4.39638 4.44736 4.55539 4.60609 4.70714 4.74479 4.87357 4.89271 4.96905 4.99585 5.04589 5.15577 5.19126 5.22358 5.29342 5.33232 5.43333 5.47841 5.54793 5.65003 5.71417 5.78188 6.13155 6.23682 6.34227 6.42873 6.49071 6.60506 6.82634 6.96583 7.54805 9.02167 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.026477 B = 0.003007 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.274006 B = 9309.059363 C = 9787.105325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 O -0.333 6.333 4 C 0.114 3.886 5 C -0.191 4.191 6 C -0.104 4.104 7 C 0.060 3.940 8 O -0.505 6.505 9 C -0.069 4.069 10 C 0.103 3.897 11 N -0.676 5.676 12 C 0.089 3.911 13 C 0.061 3.939 14 C -0.106 4.106 15 C -0.122 4.122 16 C -0.525 4.525 17 H 0.044 0.956 18 C 0.022 3.978 19 N -0.903 5.903 20 Si 0.944 3.056 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.282 1.282 24 C -0.137 4.137 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.158 0.842 31 H 0.152 0.848 32 H 0.399 0.601 33 H 0.038 0.962 34 H 0.077 0.923 35 H 0.337 0.663 36 H 0.011 0.989 37 H 0.049 0.951 38 H 0.033 0.967 39 H 0.049 0.951 40 H 0.009 0.991 41 H 0.019 0.981 42 H 0.056 0.944 43 H 0.035 0.965 44 H 0.257 0.743 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.244 -18.209 -10.088 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 O -0.248 6.248 4 C 0.069 3.931 5 C -0.209 4.209 6 C -0.122 4.122 7 C 0.015 3.985 8 O -0.317 6.317 9 C -0.070 4.070 10 C -0.026 4.026 11 N -0.309 5.309 12 C -0.040 4.040 13 C 0.060 3.940 14 C -0.164 4.164 15 C -0.180 4.180 16 C -0.564 4.564 17 H 0.062 0.938 18 C -0.177 4.177 19 N -0.542 5.542 20 Si 0.771 3.229 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.208 1.208 24 C -0.156 4.156 25 H 0.120 0.880 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.175 0.825 31 H 0.170 0.830 32 H 0.256 0.744 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.157 0.843 36 H 0.029 0.971 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.028 0.972 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.021 -17.858 -10.273 23.853 hybrid contribution 1.508 1.012 0.261 1.835 sum -10.512 -16.846 -10.012 22.239 Atomic orbital electron populations 1.21813 0.91687 1.04190 1.03062 1.23097 0.96818 0.80685 1.02478 1.86087 1.18523 1.31514 1.88681 1.19017 0.82971 0.93984 0.97140 1.21353 0.93272 0.98941 1.07370 1.21401 0.95344 0.96690 0.98778 1.18376 0.83273 0.92058 1.04756 1.84802 1.17121 1.95084 1.34698 1.19922 0.92808 0.95091 0.99194 1.20737 0.98767 0.92450 0.90638 1.60628 1.41955 1.04030 1.24248 1.21866 0.95596 0.88797 0.97770 1.18133 0.92212 0.93341 0.90297 1.21478 0.96606 0.97106 1.01182 1.21671 0.98119 0.96424 1.01742 1.21460 1.38448 1.00557 0.95916 0.93771 1.25521 0.96374 1.00238 0.95535 1.69967 1.46139 1.37147 1.00977 0.85727 0.78051 0.81313 0.77806 1.19748 1.20967 1.20826 1.20268 0.93962 0.95783 1.05616 0.87994 0.92172 0.91924 0.90708 0.90981 0.82455 0.83000 0.74407 0.94355 0.90426 0.84327 0.97067 0.93210 0.94848 0.93210 0.97182 0.96193 0.92504 0.94599 0.93325 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 71.98 0.74 -0.84 16 2 C 0.04 0.59 5.46 71.98 0.39 0.99 16 3 O -0.33 -7.43 10.14 -93.32 -0.95 -8.37 16 4 C 0.11 2.73 6.69 22.49 0.15 2.88 16 5 C -0.19 -3.75 9.03 22.36 0.20 -3.55 16 6 C -0.10 -2.18 9.98 22.35 0.22 -1.96 16 7 C 0.06 1.55 6.55 22.49 0.15 1.70 16 8 O -0.51 -12.68 12.45 -93.41 -1.16 -13.85 16 9 C -0.07 -1.95 5.43 -19.78 -0.11 -2.05 16 10 C 0.10 3.17 5.44 85.56 0.47 3.64 16 11 N -0.68 -23.81 5.70 -517.92 -2.95 -26.76 16 12 C 0.09 3.69 4.59 86.30 0.40 4.09 16 13 C 0.06 2.93 0.57 -52.93 -0.03 2.90 16 14 C -0.11 -5.21 8.09 71.98 0.58 -4.62 16 15 C -0.12 -5.62 7.92 71.98 0.57 -5.05 16 16 C -0.53 -28.47 8.01 25.60 0.21 -28.26 16 17 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 18 C 0.02 1.21 5.15 84.65 0.44 1.65 16 19 N -0.90 -50.39 9.35 21.45 0.20 -50.19 16 20 Si 0.94 43.57 29.54 68.60 2.03 45.60 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 C -0.14 -3.72 9.60 22.35 0.21 -3.51 16 25 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.80 7.67 -2.39 -0.02 0.78 16 29 H 0.07 0.83 7.65 -2.39 -0.02 0.81 16 30 H 0.16 2.07 6.29 -2.91 -0.02 2.05 16 31 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.40 7.67 8.40 -74.05 -0.62 7.05 16 33 H 0.04 1.21 8.00 -2.39 -0.02 1.19 16 34 H 0.08 2.35 7.95 -2.39 -0.02 2.34 16 35 H 0.34 11.26 5.58 -89.70 -0.50 10.76 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.03 1.50 7.60 -2.39 -0.02 1.48 16 39 H 0.05 2.69 6.07 -2.39 -0.01 2.67 16 40 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 41 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 2.95 6.07 -2.39 -0.01 2.93 16 43 H 0.04 1.42 6.57 -2.39 -0.02 1.40 16 44 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 45 H 0.13 3.52 8.00 -2.91 -0.02 3.49 16 Total: -1.00 -62.67 358.26 1.62 -61.05 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -0.13 Total: 24.52 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: 4.59 Total: -32.00 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -2.75 Total: -76.95 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -2.11 Total: -22.22 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -62.67 1.62 -61.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839163377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.979 kcal (2) G-P(sol) polarization free energy of solvation -62.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds