Wall clock time and date at job start Tue Mar 31 2020 06:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42907 * 114.00102 * 2 1 4 4 C 1.52992 * 109.47524 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47255 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47385 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.47109 * 179.97438 * 6 5 4 8 8 C 1.46895 * 111.00113 * 293.95384 * 7 6 5 9 9 C 1.46904 * 110.99777 * 170.00544 * 7 6 5 10 10 C 1.50698 * 109.46921 * 190.00250 * 9 7 6 11 11 C 1.38306 * 119.93136 * 269.72424 * 10 9 7 12 12 C 1.38098 * 120.06918 * 179.72926 * 11 10 9 13 13 C 1.38878 * 119.93010 * 0.56162 * 12 11 10 14 14 O 1.35753 * 120.06576 * 179.68225 * 13 12 11 15 15 C 1.34834 * 116.99683 * 174.49012 * 14 13 12 16 16 H 1.08001 * 120.00094 * 5.05803 * 15 14 13 17 17 C 1.38651 * 119.99745 * 185.06100 * 15 14 13 18 18 N 1.31553 * 119.99858 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00181 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47044 * 90.00075 * 19 17 15 21 21 H 1.48501 * 109.47196 * 209.99834 * 19 17 15 22 22 H 1.48497 * 109.47067 * 330.00057 * 19 17 15 23 23 C 1.38878 * 119.86598 * 359.71203 * 13 12 11 24 24 C 1.38101 * 119.92526 * 359.97438 * 23 13 12 25 25 H 1.09010 * 109.47098 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47239 * 299.99749 * 1 2 3 27 27 H 1.09000 * 109.47363 * 60.00165 * 1 2 3 28 28 H 1.08996 * 109.46695 * 59.99851 * 3 2 1 29 29 H 1.09005 * 109.46448 * 300.00413 * 3 2 1 30 30 H 1.09001 * 109.47284 * 59.99660 * 4 3 2 31 31 H 1.09005 * 109.46970 * 299.99970 * 4 3 2 32 32 H 1.09001 * 109.47308 * 59.99606 * 5 4 3 33 33 H 1.09005 * 109.47051 * 299.99852 * 5 4 3 34 34 H 1.09001 * 109.46834 * 59.99787 * 6 5 4 35 35 H 1.08995 * 109.47347 * 300.00185 * 6 5 4 36 36 H 1.09002 * 109.47219 * 60.00007 * 8 7 6 37 37 H 1.09000 * 109.47366 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.47377 * 300.00154 * 8 7 6 39 39 H 1.09007 * 109.46904 * 309.99488 * 9 7 6 40 40 H 1.08995 * 109.47654 * 69.99538 * 9 7 6 41 41 H 1.08004 * 119.96013 * 359.97438 * 11 10 9 42 42 H 1.08002 * 120.03435 * 180.26982 * 12 11 10 43 43 H 0.97000 * 120.00368 * 179.97438 * 18 17 15 44 44 H 1.07993 * 120.03636 * 179.97438 * 23 13 12 45 45 H 1.08003 * 119.96559 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 6 4.1576 2.5825 0.0000 6 6 5.6828 2.4618 0.0000 7 7 6.2802 3.8039 0.0000 8 6 5.9856 4.5112 -1.2533 9 6 7.7282 3.7355 0.2380 10 6 8.2643 5.1237 0.4754 11 6 8.7142 5.8814 -0.5906 12 6 9.2008 7.1560 -0.3770 13 6 9.2490 7.6725 0.9113 14 8 9.7329 8.9227 1.1252 15 6 9.6462 9.4060 2.3810 16 1 9.2825 8.7751 3.1785 17 6 10.0240 10.7130 2.6483 18 7 9.9390 11.1847 3.8734 19 14 10.6537 11.8040 1.2690 20 1 9.5132 12.5235 0.6470 21 1 11.6198 12.7889 1.8186 22 1 11.3288 10.9670 0.2448 23 6 8.8018 6.9071 1.9804 24 6 8.3103 5.6356 1.7594 25 1 -0.3634 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6884 1.8464 -0.8900 30 1 3.8567 0.6440 -0.8908 31 1 3.8573 0.6437 0.8892 32 1 3.8363 3.1229 0.8904 33 1 3.8356 3.1240 -0.8896 34 1 6.0045 1.9213 -0.8902 35 1 6.0045 1.9206 0.8897 36 1 4.9063 4.6091 -1.3702 37 1 6.4399 5.5017 -1.2269 38 1 6.3924 3.9476 -2.0929 39 1 7.9237 3.1160 1.1134 40 1 8.2194 3.3002 -0.6322 41 1 8.6811 5.4772 -1.5916 42 1 9.5479 7.7489 -1.2104 43 1 10.2036 12.0990 4.0606 44 1 8.8385 7.3058 2.9834 45 1 7.9620 5.0400 2.5903 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842173784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:41 Heat of formation + Delta-G solvation = -53.069457 kcal Electronic energy + Delta-G solvation = -22445.528053 eV Core-core repulsion = 19042.759349 eV Total energy + Delta-G solvation = -3402.768703 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.34635 -38.46983 -37.90280 -36.36582 -34.05002 -32.38827 -30.47547 -30.20611 -28.55403 -27.08961 -26.43610 -25.17635 -23.78964 -22.11458 -21.83649 -20.87930 -20.18923 -17.87562 -17.23990 -16.66390 -16.64184 -15.84646 -15.63064 -15.11926 -15.01391 -14.82075 -14.35420 -13.98770 -13.86980 -13.73324 -13.27079 -13.02776 -12.63830 -12.60192 -12.46422 -12.20037 -12.08579 -11.84528 -11.64197 -11.55772 -11.41749 -11.25941 -11.15499 -10.77988 -10.69012 -10.65480 -10.56588 -10.13907 -10.02531 -9.37116 -8.86167 -8.29270 -8.20956 -7.29780 -6.40848 -4.07367 2.14037 2.19728 3.22071 3.25818 3.35283 3.40434 4.03179 4.24092 4.58565 4.61888 4.67838 4.86417 4.90932 4.93944 4.99809 5.05214 5.11493 5.13174 5.18678 5.26809 5.34011 5.37812 5.47108 5.50883 5.56955 5.64000 5.66678 5.69791 5.80865 5.84786 5.98874 6.05849 6.14233 6.15626 6.35600 6.58277 6.79467 6.80627 6.99567 7.07444 7.18102 7.28722 7.35825 7.62913 7.81638 8.04878 8.94474 9.57110 10.66816 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029179 B = 0.002254 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.361885 B =12421.082756 C =12764.542145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.061 3.939 4 C -0.117 4.117 5 C -0.114 4.114 6 C 0.056 3.944 7 N -0.537 5.537 8 C 0.020 3.980 9 C 0.112 3.888 10 C -0.170 4.170 11 C -0.071 4.071 12 C -0.194 4.194 13 C 0.161 3.839 14 O -0.218 6.218 15 C -0.389 4.389 16 H 0.107 0.893 17 C 0.063 3.937 18 N -0.880 5.880 19 Si 0.906 3.094 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.260 1.260 23 C -0.222 4.222 24 C -0.051 4.051 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.030 0.970 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.019 0.981 39 H 0.074 0.926 40 H 0.032 0.968 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.279 0.721 44 H 0.132 0.868 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.943 -18.705 -9.144 24.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.016 4.016 4 C -0.155 4.155 5 C -0.152 4.152 6 C -0.072 4.072 7 N -0.261 5.261 8 C -0.128 4.128 9 C -0.015 4.015 10 C -0.171 4.171 11 C -0.090 4.090 12 C -0.213 4.213 13 C 0.108 3.892 14 O -0.123 6.123 15 C -0.464 4.464 16 H 0.124 0.876 17 C -0.140 4.140 18 N -0.518 5.518 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.184 1.184 23 C -0.241 4.241 24 C -0.070 4.070 25 H 0.103 0.897 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.038 0.962 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.089 0.911 44 H 0.150 0.850 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.889 -18.243 -8.754 23.991 hybrid contribution 0.309 0.397 -0.970 1.093 sum -12.580 -17.847 -9.724 23.902 Atomic orbital electron populations 1.22735 0.81054 1.02696 1.00026 1.87863 1.19720 1.28402 1.95451 1.22577 0.94295 0.84402 1.00308 1.21480 0.92821 0.97905 1.03293 1.21507 0.94815 0.95755 1.03111 1.22086 0.94332 0.90072 1.00683 1.62015 1.12251 1.16772 1.35045 1.22481 1.01320 0.99882 0.89117 1.20825 0.86144 0.94620 0.99921 1.19136 1.07758 0.96538 0.93663 1.20486 0.97856 0.93302 0.97338 1.20160 1.09512 0.96990 0.94627 1.19132 0.91483 0.85373 0.93174 1.83571 1.70270 1.25939 1.32566 1.20773 1.45306 0.97918 0.82439 0.87602 1.24467 0.96324 0.96134 0.97114 1.69645 1.46181 1.17151 1.18780 0.86181 0.79159 0.79800 0.81748 1.19909 1.20805 1.18408 1.21280 1.07283 0.95612 0.99926 1.20620 0.96197 0.94501 0.95695 0.89685 0.94027 0.94109 0.93116 0.93358 0.91320 0.91004 0.90750 0.91742 0.95141 0.90815 0.91759 0.90307 0.96201 0.90791 0.94938 0.87358 0.86667 0.91074 0.84992 0.87230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.40 -3.77 10.70 -35.23 -0.38 -4.15 16 3 C 0.06 0.49 5.94 37.15 0.22 0.71 16 4 C -0.12 -0.94 5.58 -26.73 -0.15 -1.09 16 5 C -0.11 -1.00 5.14 -26.73 -0.14 -1.13 16 6 C 0.06 0.56 4.96 -3.83 -0.02 0.54 16 7 N -0.54 -6.69 4.75 -244.38 -1.16 -7.85 16 8 C 0.02 0.24 8.98 60.06 0.54 0.78 16 9 C 0.11 1.47 5.12 -4.97 -0.03 1.44 16 10 C -0.17 -2.78 4.89 -104.57 -0.51 -3.29 16 11 C -0.07 -1.19 7.90 -39.61 -0.31 -1.50 16 12 C -0.19 -3.81 9.99 -39.40 -0.39 -4.20 16 13 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 14 O -0.22 -5.79 8.59 0.03 0.00 -5.79 16 15 C -0.39 -10.99 9.95 30.89 0.31 -10.68 16 16 H 0.11 3.06 5.44 -52.49 -0.29 2.77 16 17 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 18 N -0.88 -25.46 13.96 55.48 0.77 -24.68 16 19 Si 0.91 21.72 28.62 -169.99 -4.86 16.86 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 23 C -0.22 -4.80 9.17 -39.39 -0.36 -5.16 16 24 C -0.05 -0.93 9.69 -39.61 -0.38 -1.32 16 25 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.56 6.55 -51.93 -0.34 0.22 16 34 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 35 H 0.07 0.70 7.93 -51.93 -0.41 0.29 16 36 H 0.06 0.68 6.47 -51.93 -0.34 0.35 16 37 H 0.08 1.07 5.90 -51.93 -0.31 0.76 16 38 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.07 0.91 7.87 -51.92 -0.41 0.50 16 40 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 41 H 0.11 1.51 8.00 -52.48 -0.42 1.09 16 42 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 43 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.13 3.01 5.64 -52.49 -0.30 2.71 16 45 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 366.09 15.07 5.52 5.52 Total: -1.00 -29.96 366.09 -8.01 -37.97 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.43 Total: 0.59 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -0.47 Total: -18.47 kcal Atomic # 7 Polarization: -32.15 SS G_CDS: -0.39 Total: -32.53 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.38 Total: -9.93 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.86 Total: 16.86 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.96 -8.01 -37.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842173784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.096 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds