Wall clock time and date at job start Tue Mar 31 2020 06:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42907 * 114.00102 * 2 1 4 4 C 1.52992 * 109.47524 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47255 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47385 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.47109 * 179.97438 * 6 5 4 8 8 C 1.46895 * 111.00113 * 293.95384 * 7 6 5 9 9 C 1.46904 * 110.99777 * 170.00544 * 7 6 5 10 10 C 1.50698 * 109.46921 * 190.00250 * 9 7 6 11 11 C 1.38306 * 119.93136 * 269.72424 * 10 9 7 12 12 C 1.38098 * 120.06918 * 179.72926 * 11 10 9 13 13 C 1.38878 * 119.93010 * 0.56162 * 12 11 10 14 14 O 1.35753 * 120.06576 * 179.68225 * 13 12 11 15 15 C 1.34834 * 116.99683 * 174.49012 * 14 13 12 16 16 H 1.08001 * 120.00094 * 5.05803 * 15 14 13 17 17 C 1.38651 * 119.99745 * 185.06100 * 15 14 13 18 18 N 1.31553 * 119.99858 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00181 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47044 * 90.00075 * 19 17 15 21 21 H 1.48501 * 109.47196 * 209.99834 * 19 17 15 22 22 H 1.48497 * 109.47067 * 330.00057 * 19 17 15 23 23 C 1.38878 * 119.86598 * 359.71203 * 13 12 11 24 24 C 1.38101 * 119.92526 * 359.97438 * 23 13 12 25 25 H 1.09010 * 109.47098 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47239 * 299.99749 * 1 2 3 27 27 H 1.09000 * 109.47363 * 60.00165 * 1 2 3 28 28 H 1.08996 * 109.46695 * 59.99851 * 3 2 1 29 29 H 1.09005 * 109.46448 * 300.00413 * 3 2 1 30 30 H 1.09001 * 109.47284 * 59.99660 * 4 3 2 31 31 H 1.09005 * 109.46970 * 299.99970 * 4 3 2 32 32 H 1.09001 * 109.47308 * 59.99606 * 5 4 3 33 33 H 1.09005 * 109.47051 * 299.99852 * 5 4 3 34 34 H 1.09001 * 109.46834 * 59.99787 * 6 5 4 35 35 H 1.08995 * 109.47347 * 300.00185 * 6 5 4 36 36 H 1.09002 * 109.47219 * 60.00007 * 8 7 6 37 37 H 1.09000 * 109.47366 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.47377 * 300.00154 * 8 7 6 39 39 H 1.09007 * 109.46904 * 309.99488 * 9 7 6 40 40 H 1.08995 * 109.47654 * 69.99538 * 9 7 6 41 41 H 1.08004 * 119.96013 * 359.97438 * 11 10 9 42 42 H 1.08002 * 120.03435 * 180.26982 * 12 11 10 43 43 H 0.97000 * 120.00368 * 179.97438 * 18 17 15 44 44 H 1.07993 * 120.03636 * 179.97438 * 23 13 12 45 45 H 1.08003 * 119.96559 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 6 4.1576 2.5825 0.0000 6 6 5.6828 2.4618 0.0000 7 7 6.2802 3.8039 0.0000 8 6 5.9856 4.5112 -1.2533 9 6 7.7282 3.7355 0.2380 10 6 8.2643 5.1237 0.4754 11 6 8.7142 5.8814 -0.5906 12 6 9.2008 7.1560 -0.3770 13 6 9.2490 7.6725 0.9113 14 8 9.7329 8.9227 1.1252 15 6 9.6462 9.4060 2.3810 16 1 9.2825 8.7751 3.1785 17 6 10.0240 10.7130 2.6483 18 7 9.9390 11.1847 3.8734 19 14 10.6537 11.8040 1.2690 20 1 9.5132 12.5235 0.6470 21 1 11.6198 12.7889 1.8186 22 1 11.3288 10.9670 0.2448 23 6 8.8018 6.9071 1.9804 24 6 8.3103 5.6356 1.7594 25 1 -0.3634 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6884 1.8464 -0.8900 30 1 3.8567 0.6440 -0.8908 31 1 3.8573 0.6437 0.8892 32 1 3.8363 3.1229 0.8904 33 1 3.8356 3.1240 -0.8896 34 1 6.0045 1.9213 -0.8902 35 1 6.0045 1.9206 0.8897 36 1 4.9063 4.6091 -1.3702 37 1 6.4399 5.5017 -1.2269 38 1 6.3924 3.9476 -2.0929 39 1 7.9237 3.1160 1.1134 40 1 8.2194 3.3002 -0.6322 41 1 8.6811 5.4772 -1.5916 42 1 9.5479 7.7489 -1.2104 43 1 10.2036 12.0990 4.0606 44 1 8.8385 7.3058 2.9834 45 1 7.9620 5.0400 2.5903 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842173784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:41 Heat of formation + Delta-G solvation = -71.656731 kcal Electronic energy + Delta-G solvation = -22446.334058 eV Core-core repulsion = 19042.759349 eV Total energy + Delta-G solvation = -3403.574708 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.94841 -39.41215 -38.87809 -37.71564 -34.90712 -34.40280 -31.91815 -31.61380 -29.36140 -28.25499 -27.34212 -26.71531 -24.84482 -23.63128 -22.79820 -21.73268 -21.51908 -19.80185 -19.07121 -17.29152 -17.27636 -16.75940 -16.71004 -16.50391 -16.08670 -15.90332 -15.65573 -15.60431 -15.33473 -15.07488 -14.55397 -14.28505 -14.16017 -14.00701 -13.61805 -13.27061 -13.09144 -12.85946 -12.66799 -12.60492 -12.46753 -12.41931 -12.29199 -12.15289 -12.00341 -11.87313 -11.68152 -11.40526 -11.25721 -10.89271 -10.61974 -9.77064 -9.23518 -8.92909 -8.49309 -6.21836 0.58688 0.64228 1.31377 1.35642 1.52081 2.28421 2.65857 2.81684 3.02277 3.15408 3.38399 3.93767 4.01052 4.03396 4.07687 4.18260 4.29585 4.36348 4.39102 4.47556 4.52060 4.52798 4.56276 4.59990 4.67449 4.74816 4.76398 4.80269 4.85927 4.87544 4.93868 4.99967 5.00777 5.17242 5.27254 5.33854 5.39428 5.42085 5.58408 5.77136 5.83721 5.92265 6.16261 6.22948 6.23616 6.29963 6.84998 7.59728 8.62353 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029179 B = 0.002254 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.361885 B =12421.082756 C =12764.542145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.058 3.942 4 C -0.110 4.110 5 C -0.106 4.106 6 C 0.058 3.942 7 N -0.553 5.553 8 C 0.020 3.980 9 C 0.113 3.887 10 C -0.143 4.143 11 C -0.061 4.061 12 C -0.192 4.192 13 C 0.119 3.881 14 O -0.246 6.246 15 C -0.399 4.399 16 H 0.080 0.920 17 C 0.008 3.992 18 N -0.924 5.924 19 Si 0.972 3.028 20 H -0.266 1.266 21 H -0.267 1.267 22 H -0.263 1.263 23 C -0.238 4.238 24 C -0.055 4.055 25 H 0.096 0.904 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.041 0.959 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.035 0.965 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.149 0.851 42 H 0.128 0.872 43 H 0.284 0.716 44 H 0.106 0.894 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.784 -20.961 -11.754 27.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.018 4.018 4 C -0.148 4.148 5 C -0.144 4.144 6 C -0.069 4.069 7 N -0.277 5.277 8 C -0.128 4.128 9 C -0.014 4.014 10 C -0.145 4.145 11 C -0.079 4.079 12 C -0.211 4.211 13 C 0.070 3.930 14 O -0.154 6.154 15 C -0.475 4.475 16 H 0.097 0.903 17 C -0.190 4.190 18 N -0.564 5.564 19 Si 0.794 3.206 20 H -0.191 1.191 21 H -0.192 1.192 22 H -0.187 1.187 23 C -0.258 4.258 24 C -0.074 4.074 25 H 0.114 0.886 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.166 0.834 42 H 0.146 0.854 43 H 0.094 0.906 44 H 0.123 0.877 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.754 -20.547 -11.378 27.217 hybrid contribution 0.393 0.727 -0.241 0.861 sum -13.360 -19.820 -11.619 26.577 Atomic orbital electron populations 1.22911 0.79685 1.03751 1.00758 1.87821 1.21362 1.29145 1.95609 1.22626 0.94298 0.84150 1.00754 1.21397 0.92840 0.97382 1.03205 1.21413 0.94202 0.96010 1.02782 1.22118 0.94653 0.88723 1.01414 1.61940 1.11559 1.18484 1.35760 1.22480 1.02022 0.98938 0.89399 1.20839 0.86935 0.92119 1.01492 1.19629 1.04449 0.97848 0.92525 1.20920 0.95778 0.91847 0.99345 1.20486 1.08916 0.98262 0.93442 1.19680 0.93407 0.84851 0.95068 1.83512 1.72937 1.27827 1.31109 1.20700 1.45581 0.98182 0.83032 0.90274 1.25297 0.96734 0.97379 0.99576 1.69731 1.48238 1.17920 1.20559 0.85198 0.78913 0.77928 0.78536 1.19088 1.19185 1.18726 1.21274 1.08576 0.97272 0.98637 1.20873 0.95654 0.93230 0.97639 0.88588 0.93421 0.93237 0.92942 0.92653 0.91153 0.91306 0.91705 0.91433 0.94063 0.90375 0.90808 0.92230 0.94624 0.89567 0.92945 0.83368 0.85422 0.90600 0.87656 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.34 10.70 -148.98 -1.59 -8.94 16 3 C 0.06 0.84 5.94 71.98 0.43 1.26 16 4 C -0.11 -1.53 5.58 30.59 0.17 -1.35 16 5 C -0.11 -1.56 5.14 30.59 0.16 -1.41 16 6 C 0.06 0.94 4.96 86.30 0.43 1.37 16 7 N -0.55 -11.71 4.75 -927.07 -4.41 -16.12 16 8 C 0.02 0.39 8.98 127.69 1.15 1.53 16 9 C 0.11 2.49 5.12 85.56 0.44 2.93 16 10 C -0.14 -4.26 4.89 -19.83 -0.10 -4.36 16 11 C -0.06 -1.82 7.90 22.25 0.18 -1.65 16 12 C -0.19 -7.31 9.99 22.39 0.22 -7.09 16 13 C 0.12 5.63 6.65 22.58 0.15 5.78 16 14 O -0.25 -13.58 8.59 -22.81 -0.20 -13.77 16 15 C -0.40 -23.86 9.95 67.92 0.68 -23.19 16 16 H 0.08 4.98 5.44 -2.91 -0.02 4.97 16 17 C 0.01 0.49 5.49 84.83 0.47 0.95 16 18 N -0.92 -55.78 13.96 21.61 0.30 -55.48 16 19 Si 0.97 45.90 28.62 68.60 1.96 47.87 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 23 C -0.24 -10.69 9.17 22.39 0.21 -10.49 16 24 C -0.06 -1.96 9.69 22.25 0.22 -1.74 16 25 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 27 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 0.96 6.55 -2.38 -0.02 0.95 16 34 H 0.04 0.60 8.12 -2.39 -0.02 0.59 16 35 H 0.08 1.21 7.93 -2.39 -0.02 1.19 16 36 H 0.07 1.32 6.47 -2.39 -0.02 1.30 16 37 H 0.06 1.41 5.90 -2.39 -0.01 1.39 16 38 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.09 1.75 7.87 -2.38 -0.02 1.73 16 40 H 0.05 1.00 8.06 -2.39 -0.02 0.98 16 41 H 0.15 3.36 8.00 -2.91 -0.02 3.34 16 42 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 43 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 44 H 0.11 5.23 5.64 -2.91 -0.02 5.21 16 45 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -67.80 366.09 3.05 -64.75 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.95 Total: 17.61 kcal Atomic # 6 Polarization: -41.95 SS G_CDS: 6.03 Total: -35.91 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -4.11 Total: -71.60 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -1.79 Total: -22.71 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.96 Total: 47.87 kcal Total: -67.80 3.05 -64.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842173784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.903 kcal (2) G-P(sol) polarization free energy of solvation -67.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds