Wall clock time and date at job start Tue Mar 31 2020 07:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99827 * 2 1 4 4 H 1.48504 * 109.47210 * 95.10338 * 3 2 1 5 5 H 1.48501 * 109.47150 * 215.10261 * 3 2 1 6 6 H 1.48501 * 109.47273 * 335.10179 * 3 2 1 7 7 C 1.37883 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99875 * 2.49296 * 7 2 1 9 9 C 1.50697 * 119.99923 * 182.48995 * 7 2 1 10 10 C 1.53001 * 115.55068 * 271.78687 * 9 7 2 11 11 N 1.46500 * 109.47034 * 295.08812 * 10 9 7 12 12 C 1.35311 * 125.86717 * 123.65680 * 11 10 9 13 13 C 1.35355 * 106.17302 * 179.97438 * 12 11 10 14 14 C 1.50706 * 126.74891 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.46925 * 125.00492 * 14 13 12 16 16 C 1.52996 * 109.47026 * 179.97438 * 15 14 13 17 17 C 1.52998 * 109.47026 * 179.97438 * 16 15 14 18 18 C 1.53005 * 109.47152 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47263 * 179.97438 * 18 17 16 20 20 O 1.42896 * 109.46969 * 179.97438 * 19 18 17 21 21 N 1.33765 * 106.49558 * 0.02562 * 13 12 11 22 22 N 1.28638 * 108.88984 * 359.73367 * 21 13 12 23 23 C 1.53001 * 117.50085 * 126.07873 * 9 7 2 24 24 C 1.53006 * 60.00181 * 252.51015 * 23 9 7 25 25 H 0.96993 * 119.99825 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46913 * 55.08460 * 10 9 7 27 27 H 1.08997 * 109.47346 * 175.08706 * 10 9 7 28 28 H 1.07999 * 126.91584 * 359.97438 * 12 11 10 29 29 H 1.08998 * 109.47083 * 245.00259 * 14 13 12 30 30 H 1.08998 * 109.47209 * 5.00311 * 14 13 12 31 31 H 1.08998 * 109.47050 * 299.99787 * 15 14 13 32 32 H 1.08998 * 109.47325 * 59.99890 * 15 14 13 33 33 H 1.08998 * 109.47077 * 299.99825 * 16 15 14 34 34 H 1.08998 * 109.47114 * 59.99815 * 16 15 14 35 35 H 1.09009 * 109.47058 * 299.99328 * 17 16 15 36 36 H 1.08998 * 109.47325 * 59.99944 * 17 16 15 37 37 H 1.08998 * 109.47121 * 299.99929 * 18 17 16 38 38 H 1.09008 * 109.47022 * 59.99785 * 18 17 16 39 39 H 1.08998 * 109.47426 * 300.00271 * 19 18 17 40 40 H 1.08998 * 109.46838 * 60.00306 * 19 18 17 41 41 H 0.96709 * 113.99918 * 180.02562 * 20 19 18 42 42 H 1.09001 * 117.49318 * 359.97438 * 23 9 7 43 43 H 1.08989 * 117.49920 * 145.01890 * 23 9 7 44 44 H 1.08999 * 117.49738 * 252.51663 * 24 23 9 45 45 H 1.09004 * 117.50194 * 107.48385 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6045 1.9842 1.3945 5 1 3.4886 1.4738 -0.8051 6 1 1.3968 2.6814 -0.5894 7 6 2.0046 -1.1941 0.0005 8 1 1.4654 -2.1289 -0.0397 9 6 3.5105 -1.1946 0.0572 10 6 4.2219 -1.1225 -1.2954 11 7 3.9324 -2.3352 -2.0647 12 6 3.3854 -2.3778 -3.3016 13 6 3.2965 -3.6880 -3.6296 14 6 2.7525 -4.2614 -4.9128 15 6 3.8030 -5.1734 -5.5495 16 6 3.2506 -5.7560 -6.8519 17 6 4.3013 -6.6676 -7.4889 18 6 3.7486 -7.2507 -8.7910 19 6 4.7996 -8.1618 -9.4284 20 8 4.2831 -8.7068 -10.6442 21 7 3.7864 -4.3737 -2.5908 22 7 4.1595 -3.5430 -1.6822 23 6 4.1756 -2.0173 1.1626 24 6 4.1732 -0.4893 1.2424 25 1 -0.4849 0.8400 -0.0004 26 1 3.8686 -0.2503 -1.8456 27 1 5.2971 -1.0410 -1.1366 28 1 3.0810 -1.5359 -3.9056 29 1 1.8520 -4.8375 -4.7003 30 1 2.5112 -3.4502 -5.5997 31 1 4.7036 -4.5973 -5.7620 32 1 4.0443 -5.9846 -4.8626 33 1 2.3502 -6.3323 -6.6389 34 1 3.0089 -4.9451 -7.5389 35 1 5.2015 -6.0909 -7.7020 36 1 4.5434 -7.4785 -6.8020 37 1 2.8486 -7.8274 -8.5777 38 1 3.5062 -6.4399 -9.4782 39 1 5.6994 -7.5848 -9.6419 40 1 5.0423 -8.9725 -8.7415 41 1 4.8974 -9.2960 -11.1033 42 1 3.5238 -2.5577 1.8491 43 1 5.1200 -2.5073 0.9263 44 1 5.1160 0.0258 1.0583 45 1 3.5198 -0.0248 1.9810 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849144481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:56 Heat of formation + Delta-G solvation = 18.601642 kcal Electronic energy + Delta-G solvation = -22724.915774 eV Core-core repulsion = 19357.547713 eV Total energy + Delta-G solvation = -3367.368060 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.00115 -39.00193 -38.28972 -36.98787 -35.08441 -34.29887 -33.88702 -31.59611 -29.15414 -28.45303 -27.52152 -25.12045 -23.38042 -23.08047 -22.54414 -21.85366 -21.68471 -20.77040 -18.64934 -18.18459 -17.56722 -17.16484 -16.96284 -16.88136 -15.96638 -15.66593 -15.45822 -15.26290 -14.86953 -14.71406 -14.66339 -14.24237 -13.98019 -13.72979 -13.14880 -13.10610 -12.90260 -12.66357 -12.43498 -12.33743 -12.21378 -12.07492 -11.95321 -11.78513 -11.76706 -11.68126 -11.44696 -11.26729 -11.02089 -10.86118 -10.82326 -10.61950 -10.45590 -9.88400 -8.33057 -6.44996 0.87518 1.36240 1.39370 1.50354 1.70031 1.72248 2.34079 2.98505 3.15996 3.30130 3.58542 3.83602 3.91600 4.00721 4.01610 4.12237 4.20307 4.25119 4.29398 4.33275 4.38632 4.46067 4.48518 4.58784 4.62580 4.76521 4.82939 4.84282 4.90842 4.97817 5.03297 5.05491 5.08227 5.16930 5.18663 5.29832 5.38349 5.42820 5.47144 5.53363 5.59743 5.61321 5.88142 6.23655 6.63447 6.90063 7.25206 7.74267 8.83272 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.030764 B = 0.002472 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.938623 B =11322.762945 C =11739.386112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.018 3.982 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.219 1.219 6 H -0.299 1.299 7 C -0.487 4.487 8 H 0.006 0.994 9 C -0.044 4.044 10 C 0.143 3.857 11 N -0.261 5.261 12 C -0.052 4.052 13 C -0.038 4.038 14 C -0.026 4.026 15 C -0.101 4.101 16 C -0.113 4.113 17 C -0.112 4.112 18 C -0.120 4.120 19 C 0.071 3.929 20 O -0.600 6.600 21 N -0.312 5.312 22 N -0.111 5.111 23 C -0.158 4.158 24 C -0.172 4.172 25 H 0.268 0.732 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.212 0.788 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.396 0.604 42 H 0.064 0.936 43 H 0.101 0.899 44 H 0.121 0.879 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.251 -5.975 -16.848 22.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.180 4.180 3 Si 0.773 3.227 4 H -0.189 1.189 5 H -0.141 1.141 6 H -0.226 1.226 7 C -0.524 4.524 8 H 0.025 0.975 9 C -0.046 4.046 10 C 0.022 3.978 11 N -0.053 5.053 12 C -0.204 4.204 13 C -0.178 4.178 14 C -0.065 4.065 15 C -0.139 4.139 16 C -0.151 4.151 17 C -0.150 4.150 18 C -0.158 4.158 19 C -0.006 4.006 20 O -0.408 6.408 21 N -0.177 5.177 22 N -0.089 5.089 23 C -0.195 4.195 24 C -0.209 4.209 25 H 0.076 0.924 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.229 0.771 29 H 0.090 0.910 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.246 0.754 42 H 0.083 0.917 43 H 0.119 0.881 44 H 0.139 0.861 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.147 -6.403 -15.502 21.311 hybrid contribution -0.599 0.929 -0.306 1.147 sum 12.547 -5.475 -15.808 20.912 Atomic orbital electron populations 1.70080 1.08851 1.28457 1.51412 1.26032 0.95335 1.03478 0.93122 0.85764 0.79813 0.77007 0.80159 1.18878 1.14128 1.22587 1.20151 0.88895 0.91923 1.51455 0.97527 1.19406 0.92829 1.04964 0.87368 1.22166 1.01085 0.81896 0.92617 1.47337 1.37958 1.07778 1.12215 1.23931 1.06055 1.01235 0.89203 1.22464 1.05842 0.90547 0.98939 1.19961 0.97971 0.99775 0.88838 1.21401 0.97748 0.98346 0.96451 1.21537 0.98469 0.99287 0.95766 1.21449 0.98855 0.99163 0.95488 1.21524 0.98624 0.98940 0.96698 1.22286 0.96345 0.96462 0.85528 1.86429 1.47701 1.67982 1.38725 1.74868 1.15957 1.26606 1.00307 1.78118 1.21828 0.87498 1.21501 1.22730 1.01395 0.93173 1.02248 1.23122 1.02122 0.95135 1.00541 0.92358 0.87005 0.86878 0.77139 0.91007 0.88054 0.92042 0.93045 0.91924 0.90801 0.91210 0.91921 0.92134 0.91644 0.92593 0.92956 0.75380 0.91702 0.88059 0.86127 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.83 13.96 21.45 0.30 -57.54 16 2 C 0.02 0.99 5.47 84.66 0.46 1.46 16 3 Si 0.95 39.72 24.85 68.60 1.70 41.42 16 4 H -0.26 -10.64 6.97 99.48 0.69 -9.94 16 5 H -0.22 -7.47 5.87 99.48 0.58 -6.88 16 6 H -0.30 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.49 -26.89 9.33 25.60 0.24 -26.65 16 8 H 0.01 0.43 8.06 -2.91 -0.02 0.41 16 9 C -0.04 -1.86 0.88 -52.93 -0.05 -1.91 16 10 C 0.14 4.99 6.00 86.38 0.52 5.51 16 11 N -0.26 -10.04 3.33 -347.73 -1.16 -11.19 16 12 C -0.05 -1.78 11.49 83.49 0.96 -0.82 16 13 C -0.04 -1.32 6.50 41.60 0.27 -1.05 16 14 C -0.03 -0.66 5.79 29.85 0.17 -0.49 16 15 C -0.10 -2.18 5.19 30.59 0.16 -2.03 16 16 C -0.11 -1.88 5.21 30.59 0.16 -1.72 16 17 C -0.11 -1.66 5.21 30.60 0.16 -1.50 16 18 C -0.12 -1.83 5.58 30.60 0.17 -1.66 16 19 C 0.07 0.95 7.05 71.98 0.51 1.46 16 20 O -0.60 -9.19 13.66 -148.98 -2.03 -11.23 16 21 N -0.31 -12.89 12.40 -48.60 -0.60 -13.49 16 22 N -0.11 -4.74 12.87 37.02 0.48 -4.26 16 23 C -0.16 -6.20 9.86 30.60 0.30 -5.90 16 24 C -0.17 -6.18 7.61 30.60 0.23 -5.94 16 25 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 26 H 0.11 3.59 6.55 -2.38 -0.02 3.57 16 27 H 0.11 3.14 8.09 -2.39 -0.02 3.12 16 28 H 0.21 5.46 8.06 -2.91 -0.02 5.44 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.10 1.98 8.12 -2.39 -0.02 1.96 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.40 2.31 9.12 -74.05 -0.68 1.63 16 42 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 44 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 45 H 0.08 3.11 7.11 -2.39 -0.02 3.10 16 Total: -1.00 -74.68 369.62 3.10 -71.58 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.15 Total: 25.95 kcal Atomic # 6 Polarization: -45.52 SS G_CDS: 4.27 Total: -41.25 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -0.98 Total: -86.48 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -2.03 Total: -11.23 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 1.70 Total: 41.42 kcal Total: -74.68 3.10 -71.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849144481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.182 kcal (2) G-P(sol) polarization free energy of solvation -74.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds