Wall clock time and date at job start Tue Mar 31 2020 06:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00153 * 2 1 4 4 H 1.48503 * 109.46957 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47109 * 119.99692 * 3 2 1 6 6 H 1.48503 * 109.47013 * 239.99812 * 3 2 1 7 7 C 1.38815 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00082 * 162.64811 * 7 2 1 9 9 N 1.36929 * 119.99829 * 342.64436 * 7 2 1 10 10 C 1.46929 * 120.62990 * 152.04346 * 9 7 2 11 11 C 1.53629 * 108.54166 * 126.36884 * 10 9 7 12 12 C 1.53041 * 109.23921 * 54.85915 * 11 10 9 13 13 N 1.46508 * 109.45987 * 178.48864 * 12 11 10 14 14 C 1.34773 * 120.00080 * 275.06920 * 13 12 11 15 15 O 1.21597 * 120.00010 * 359.97438 * 14 13 12 16 16 N 1.34768 * 120.00034 * 179.97438 * 14 13 12 17 17 C 1.46505 * 120.00072 * 180.02562 * 16 14 13 18 18 H 1.08999 * 115.55906 * 9.41583 * 17 16 14 19 19 C 1.53121 * 117.51062 * 223.68414 * 17 16 14 20 20 C 1.52457 * 117.51728 * 155.15529 * 17 16 14 21 21 C 1.53258 * 128.58181 * 349.84351 * 20 17 16 22 22 C 1.53885 * 86.88525 * 194.89148 * 21 20 17 23 23 C 1.53253 * 128.58674 * 225.05254 * 20 17 16 24 24 C 1.53041 * 109.54118 * 298.50711 * 12 11 10 25 25 C 1.46932 * 120.63382 * 332.32858 * 9 7 2 26 26 H 0.97002 * 119.99928 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.58609 * 246.20023 * 10 9 7 28 28 H 1.08993 * 109.58821 * 6.62890 * 10 9 7 29 29 H 1.08995 * 109.63789 * 294.86742 * 11 10 9 30 30 H 1.09003 * 109.42852 * 174.72098 * 11 10 9 31 31 H 1.09001 * 109.46519 * 58.52957 * 12 11 10 32 32 H 0.96997 * 119.99595 * 95.06932 * 13 12 11 33 33 H 0.97000 * 120.00272 * 359.97438 * 16 14 13 34 34 H 1.08997 * 117.51569 * 359.97438 * 19 17 16 35 35 H 1.09002 * 117.51598 * 145.10400 * 19 17 16 36 36 H 1.09001 * 113.64777 * 309.39086 * 21 20 17 37 37 H 1.08998 * 113.64853 * 80.39257 * 21 20 17 38 38 H 1.08997 * 113.58858 * 270.39570 * 22 21 20 39 39 H 1.08999 * 113.59269 * 139.56837 * 22 21 20 40 40 H 1.09005 * 113.64661 * 279.60250 * 23 20 17 41 41 H 1.09004 * 113.64913 * 50.60668 * 23 20 17 42 42 H 1.08998 * 109.49767 * 301.42198 * 24 12 11 43 43 H 1.09000 * 109.50111 * 181.31923 * 24 12 11 44 44 H 1.09003 * 109.58387 * 353.36618 * 25 9 7 45 45 H 1.08992 * 109.58792 * 113.79213 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6964 1.2126 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0534 -1.2235 -0.2784 9 7 1.3724 -2.3608 0.3548 10 6 1.8156 -3.6541 -0.1835 11 6 2.0741 -4.6096 0.9914 12 6 0.8183 -4.6889 1.8625 13 7 1.0472 -5.6268 2.9645 14 6 0.8467 -6.9466 2.7789 15 8 0.4754 -7.3588 1.6969 16 7 1.0577 -7.8093 3.7925 17 6 0.8404 -9.2440 3.5905 18 1 0.6653 -9.5526 2.5599 19 6 0.1038 -10.0099 4.6931 20 6 1.6038 -10.2061 4.4937 21 6 2.7463 -9.8993 5.4681 22 6 3.0148 -11.4142 5.4989 23 6 2.3579 -11.4836 4.1089 24 6 0.5004 -3.3036 2.4298 25 6 0.2277 -2.3339 1.2756 26 1 -0.4850 0.8401 -0.0004 27 1 1.0403 -4.0662 -0.8294 28 1 2.7344 -3.5170 -0.7537 29 1 2.9078 -4.2395 1.5880 30 1 2.3132 -5.6010 0.6067 31 1 -0.0209 -5.0356 1.2594 32 1 1.3430 -5.2979 3.8278 33 1 1.3543 -7.4805 4.6555 34 1 -0.2185 -9.4463 5.5686 35 1 -0.5551 -10.8227 4.3876 36 1 3.5563 -9.3207 5.0239 37 1 2.4100 -9.4954 6.4230 38 1 2.4555 -11.9407 6.2723 39 1 4.0744 -11.6697 5.4937 40 1 1.7102 -12.3499 3.9742 41 1 3.0598 -11.3461 3.2864 42 1 1.3490 -2.9457 3.0128 43 1 -0.3804 -3.3654 3.0689 44 1 0.0985 -1.3254 1.6685 45 1 -0.6744 -2.6404 0.7462 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872880511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:27 Heat of formation + Delta-G solvation = 36.294537 kcal Electronic energy + Delta-G solvation = -23541.231266 eV Core-core repulsion = 20174.630427 eV Total energy + Delta-G solvation = -3366.600839 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.33635 -39.29946 -37.37907 -35.00339 -34.30429 -32.48199 -31.47217 -30.00113 -29.14305 -26.03952 -25.02098 -23.36318 -22.80450 -22.17396 -21.50819 -20.56741 -19.43513 -18.76901 -18.04179 -16.83721 -16.42782 -15.57437 -15.27991 -15.15628 -14.97982 -14.62103 -14.05504 -13.65921 -13.51635 -13.08789 -12.98098 -12.79944 -12.61019 -12.49412 -12.29659 -11.87949 -11.72126 -11.42098 -11.09647 -10.94053 -10.80043 -10.69791 -10.62669 -10.47275 -10.25550 -10.13981 -10.02648 -9.99015 -9.72713 -9.51727 -8.86698 -8.51876 -8.39274 -6.67047 -5.78033 -3.19706 2.69813 3.19763 3.39245 3.44875 3.46088 3.65788 4.12869 4.29289 4.39417 4.48414 4.50897 4.55318 4.61036 5.05121 5.35225 5.36622 5.37888 5.42640 5.44242 5.48961 5.53213 5.56208 5.64389 5.67547 5.73192 5.92954 5.97831 6.04156 6.11618 6.30733 6.38746 6.47258 6.54089 6.61399 6.64083 6.83227 6.93301 7.01595 7.14183 7.34327 7.63817 7.80505 8.16034 8.46116 8.76982 9.22308 9.85756 10.42977 11.30824 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.039488 B = 0.002667 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.902876 B =10497.830514 C =10624.285745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.291 1.291 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.147 3.853 11 C -0.139 4.139 12 C 0.169 3.831 13 N -0.738 5.738 14 C 0.705 3.295 15 O -0.589 6.589 16 N -0.721 5.721 17 C 0.124 3.876 18 H 0.137 0.863 19 C -0.165 4.165 20 C -0.174 4.174 21 C -0.100 4.100 22 C -0.136 4.136 23 C -0.098 4.098 24 C -0.146 4.146 25 C 0.174 3.826 26 H 0.254 0.746 27 H 0.021 0.979 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.391 0.609 33 H 0.394 0.606 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.092 0.908 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 -19.815 13.465 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.217 1.217 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.020 3.980 11 C -0.180 4.180 12 C 0.065 3.935 13 N -0.392 5.392 14 C 0.405 3.595 15 O -0.467 6.467 16 N -0.373 5.373 17 C 0.016 3.984 18 H 0.155 0.845 19 C -0.203 4.203 20 C -0.176 4.176 21 C -0.138 4.138 22 C -0.174 4.174 23 C -0.135 4.135 24 C -0.186 4.186 25 C 0.048 3.952 26 H 0.064 0.936 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.223 0.777 33 H 0.228 0.772 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.110 0.890 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 2.831 -19.983 12.395 23.684 hybrid contribution 0.654 1.143 0.964 1.632 sum 3.484 -18.840 13.359 23.357 Atomic orbital electron populations 1.70018 1.05245 1.25630 1.53914 1.25045 0.95284 0.98419 1.00963 0.86366 0.78904 0.83359 0.78117 1.21653 1.21083 1.20884 1.19155 0.92719 0.84869 1.41428 0.91679 1.44111 1.35855 1.01584 1.50012 1.20970 0.97851 0.86498 0.92635 1.22467 0.97210 0.99498 0.98799 1.20926 0.98366 0.87667 0.86548 1.45550 1.72695 1.04836 1.16070 1.15963 0.78342 0.81275 0.83917 1.90915 1.53529 1.77545 1.24712 1.44448 1.73502 1.05372 1.14022 1.21302 1.01715 0.78188 0.97156 0.84503 1.23418 0.92300 1.03028 1.01600 1.22899 0.93294 0.99172 1.02249 1.22403 0.96517 0.96861 0.97971 1.22729 1.00715 0.96396 0.97521 1.22448 0.98359 0.95285 0.97420 1.22544 1.00455 0.94703 1.00890 1.20752 0.88885 0.98014 0.87583 0.93552 0.96093 0.92594 0.92469 0.92738 0.90049 0.77656 0.77224 0.88442 0.87910 0.89628 0.91519 0.90150 0.91321 0.91267 0.89584 0.92248 0.92784 0.88994 0.96078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 11.19 55.49 0.62 -25.56 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 3 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -14.95 2.99 -172.05 -0.51 -15.47 16 10 C 0.15 3.23 6.54 -3.48 -0.02 3.21 16 11 C -0.14 -2.62 5.67 -26.38 -0.15 -2.77 16 12 C 0.17 3.01 2.41 -67.88 -0.16 2.85 16 13 N -0.74 -10.67 5.08 -58.63 -0.30 -10.97 16 14 C 0.70 10.84 8.53 -86.93 -0.74 10.10 16 15 O -0.59 -11.60 15.57 5.28 0.08 -11.52 16 16 N -0.72 -8.12 5.55 -58.89 -0.33 -8.45 16 17 C 0.12 1.31 6.43 -68.14 -0.44 0.87 16 18 H 0.14 1.72 7.40 -51.93 -0.38 1.34 16 19 C -0.16 -1.35 10.46 -26.88 -0.28 -1.63 16 20 C -0.17 -1.43 3.02 -154.74 -0.47 -1.89 16 21 C -0.10 -0.71 8.08 -26.14 -0.21 -0.92 16 22 C -0.14 -0.86 8.08 -25.81 -0.21 -1.07 16 23 C -0.10 -0.71 8.10 -26.14 -0.21 -0.92 16 24 C -0.15 -2.70 5.55 -26.61 -0.15 -2.85 16 25 C 0.17 4.12 5.31 -3.70 -0.02 4.10 16 26 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 32 H 0.39 4.49 8.62 -40.82 -0.35 4.14 16 33 H 0.39 3.39 8.84 -40.82 -0.36 3.03 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.09 2.41 6.04 -51.93 -0.31 2.09 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 360.55 15.07 5.43 5.43 Total: -1.00 -31.74 360.55 -11.01 -42.75 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -7.68 Total: 5.23 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -3.29 Total: 1.96 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -0.52 Total: -60.44 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.08 Total: -11.52 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.74 -11.01 -42.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872880511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.041 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds