Wall clock time and date at job start Tue Mar 31 2020 06:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00153 * 2 1 4 4 H 1.48503 * 109.46957 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47109 * 119.99692 * 3 2 1 6 6 H 1.48503 * 109.47013 * 239.99812 * 3 2 1 7 7 C 1.38815 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00082 * 162.64811 * 7 2 1 9 9 N 1.36929 * 119.99829 * 342.64436 * 7 2 1 10 10 C 1.46929 * 120.62990 * 152.04346 * 9 7 2 11 11 C 1.53629 * 108.54166 * 126.36884 * 10 9 7 12 12 C 1.53041 * 109.23921 * 54.85915 * 11 10 9 13 13 N 1.46508 * 109.45987 * 178.48864 * 12 11 10 14 14 C 1.34773 * 120.00080 * 275.06920 * 13 12 11 15 15 O 1.21597 * 120.00010 * 359.97438 * 14 13 12 16 16 N 1.34768 * 120.00034 * 179.97438 * 14 13 12 17 17 C 1.46505 * 120.00072 * 180.02562 * 16 14 13 18 18 H 1.08999 * 115.55906 * 9.41583 * 17 16 14 19 19 C 1.53121 * 117.51062 * 223.68414 * 17 16 14 20 20 C 1.52457 * 117.51728 * 155.15529 * 17 16 14 21 21 C 1.53258 * 128.58181 * 349.84351 * 20 17 16 22 22 C 1.53885 * 86.88525 * 194.89148 * 21 20 17 23 23 C 1.53253 * 128.58674 * 225.05254 * 20 17 16 24 24 C 1.53041 * 109.54118 * 298.50711 * 12 11 10 25 25 C 1.46932 * 120.63382 * 332.32858 * 9 7 2 26 26 H 0.97002 * 119.99928 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.58609 * 246.20023 * 10 9 7 28 28 H 1.08993 * 109.58821 * 6.62890 * 10 9 7 29 29 H 1.08995 * 109.63789 * 294.86742 * 11 10 9 30 30 H 1.09003 * 109.42852 * 174.72098 * 11 10 9 31 31 H 1.09001 * 109.46519 * 58.52957 * 12 11 10 32 32 H 0.96997 * 119.99595 * 95.06932 * 13 12 11 33 33 H 0.97000 * 120.00272 * 359.97438 * 16 14 13 34 34 H 1.08997 * 117.51569 * 359.97438 * 19 17 16 35 35 H 1.09002 * 117.51598 * 145.10400 * 19 17 16 36 36 H 1.09001 * 113.64777 * 309.39086 * 21 20 17 37 37 H 1.08998 * 113.64853 * 80.39257 * 21 20 17 38 38 H 1.08997 * 113.58858 * 270.39570 * 22 21 20 39 39 H 1.08999 * 113.59269 * 139.56837 * 22 21 20 40 40 H 1.09005 * 113.64661 * 279.60250 * 23 20 17 41 41 H 1.09004 * 113.64913 * 50.60668 * 23 20 17 42 42 H 1.08998 * 109.49767 * 301.42198 * 24 12 11 43 43 H 1.09000 * 109.50111 * 181.31923 * 24 12 11 44 44 H 1.09003 * 109.58387 * 353.36618 * 25 9 7 45 45 H 1.08992 * 109.58792 * 113.79213 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6964 1.2126 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0534 -1.2235 -0.2784 9 7 1.3724 -2.3608 0.3548 10 6 1.8156 -3.6541 -0.1835 11 6 2.0741 -4.6096 0.9914 12 6 0.8183 -4.6889 1.8625 13 7 1.0472 -5.6268 2.9645 14 6 0.8467 -6.9466 2.7789 15 8 0.4754 -7.3588 1.6969 16 7 1.0577 -7.8093 3.7925 17 6 0.8404 -9.2440 3.5905 18 1 0.6653 -9.5526 2.5599 19 6 0.1038 -10.0099 4.6931 20 6 1.6038 -10.2061 4.4937 21 6 2.7463 -9.8993 5.4681 22 6 3.0148 -11.4142 5.4989 23 6 2.3579 -11.4836 4.1089 24 6 0.5004 -3.3036 2.4298 25 6 0.2277 -2.3339 1.2756 26 1 -0.4850 0.8401 -0.0004 27 1 1.0403 -4.0662 -0.8294 28 1 2.7344 -3.5170 -0.7537 29 1 2.9078 -4.2395 1.5880 30 1 2.3132 -5.6010 0.6067 31 1 -0.0209 -5.0356 1.2594 32 1 1.3430 -5.2979 3.8278 33 1 1.3543 -7.4805 4.6555 34 1 -0.2185 -9.4463 5.5686 35 1 -0.5551 -10.8227 4.3876 36 1 3.5563 -9.3207 5.0239 37 1 2.4100 -9.4954 6.4230 38 1 2.4555 -11.9407 6.2723 39 1 4.0744 -11.6697 5.4937 40 1 1.7102 -12.3499 3.9742 41 1 3.0598 -11.3461 3.2864 42 1 1.3490 -2.9457 3.0128 43 1 -0.3804 -3.3654 3.0689 44 1 0.0985 -1.3254 1.6685 45 1 -0.6744 -2.6404 0.7462 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872880511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:26 Heat of formation + Delta-G solvation = 16.250564 kcal Electronic energy + Delta-G solvation = -23542.100438 eV Core-core repulsion = 20174.630427 eV Total energy + Delta-G solvation = -3367.470011 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.36781 -40.23774 -38.96892 -36.11136 -35.72040 -34.02808 -32.77857 -31.66601 -30.83165 -26.92913 -26.57457 -24.25070 -23.91195 -23.82652 -22.75167 -21.76699 -21.06263 -19.66496 -19.14843 -18.54799 -17.59859 -16.84715 -16.37988 -16.10280 -16.06914 -16.05779 -15.53519 -15.34607 -15.04930 -14.75037 -14.39928 -14.08830 -13.70412 -13.37222 -13.18887 -13.18217 -12.99528 -12.57198 -12.53533 -12.44469 -12.30529 -12.24684 -12.03311 -11.88318 -11.65870 -11.55594 -11.41006 -11.26423 -11.13571 -10.78970 -10.54555 -10.10995 -9.44724 -8.71301 -7.87362 -5.32856 1.49338 1.50887 1.58394 1.61700 2.08381 2.52647 2.87986 3.16112 3.29542 3.59075 3.66726 3.74428 3.82807 3.90272 3.94931 3.97692 4.07623 4.34388 4.46405 4.52422 4.61964 4.64451 4.81358 4.84990 4.85795 4.87034 4.88273 4.95335 5.04672 5.06627 5.10489 5.12881 5.16061 5.29666 5.40280 5.47193 5.52371 5.56581 5.60304 5.64720 5.70533 6.04095 6.39125 7.11998 7.14583 7.60356 7.84101 8.37372 9.19631 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.039488 B = 0.002667 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.902876 B =10497.830514 C =10624.285745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.970 3.030 4 H -0.294 1.294 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.265 4.265 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.145 3.855 11 C -0.123 4.123 12 C 0.181 3.819 13 N -0.725 5.725 14 C 0.703 3.297 15 O -0.637 6.637 16 N -0.701 5.701 17 C 0.091 3.909 18 H 0.110 0.890 19 C -0.148 4.148 20 C -0.164 4.164 21 C -0.100 4.100 22 C -0.129 4.129 23 C -0.104 4.104 24 C -0.127 4.127 25 C 0.178 3.822 26 H 0.251 0.749 27 H 0.007 0.993 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.410 0.590 33 H 0.411 0.589 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.065 0.935 45 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.617 -20.786 15.983 26.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.798 3.202 4 H -0.220 1.220 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.395 4.395 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.018 3.982 11 C -0.163 4.163 12 C 0.076 3.924 13 N -0.380 5.380 14 C 0.403 3.597 15 O -0.518 6.518 16 N -0.354 5.354 17 C -0.016 4.016 18 H 0.128 0.872 19 C -0.187 4.187 20 C -0.166 4.166 21 C -0.137 4.137 22 C -0.166 4.166 23 C -0.141 4.141 24 C -0.166 4.166 25 C 0.052 3.948 26 H 0.060 0.940 27 H 0.025 0.975 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.246 0.754 33 H 0.247 0.753 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 4.186 -20.995 14.986 26.133 hybrid contribution 0.225 1.345 0.135 1.370 sum 4.411 -19.650 15.122 25.185 Atomic orbital electron populations 1.70182 1.06710 1.26061 1.55218 1.25825 0.96046 1.01572 1.01090 0.85308 0.77524 0.79006 0.78383 1.22047 1.20089 1.20327 1.19494 0.93040 0.85925 1.41057 0.91465 1.44369 1.35999 1.02084 1.50775 1.21052 0.97307 0.85951 0.93853 1.22255 0.97891 0.98473 0.97720 1.20501 0.96924 0.87885 0.87116 1.45117 1.72657 1.04203 1.15992 1.16091 0.78055 0.81590 0.84002 1.90892 1.55641 1.78319 1.26941 1.44201 1.72313 1.05234 1.13650 1.21327 1.05369 0.77981 0.96916 0.87214 1.23465 0.92547 1.02299 1.00383 1.23033 0.93771 0.98548 1.01230 1.22450 0.95700 0.97526 0.98020 1.22719 1.01259 0.95820 0.96841 1.22530 0.98424 0.95080 0.98088 1.22254 1.01956 0.93491 0.98945 1.20584 0.87672 0.97869 0.88700 0.93976 0.97523 0.92384 0.91503 0.92563 0.92717 0.75415 0.75307 0.87225 0.87097 0.89984 0.90306 0.89195 0.90598 0.90637 0.90144 0.91039 0.90495 0.91673 0.98782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.45 11.19 21.65 0.24 -55.21 16 2 C -0.05 -2.79 4.91 84.86 0.42 -2.37 16 3 Si 0.97 44.59 29.59 68.60 2.03 46.62 16 4 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.27 -14.67 9.58 84.04 0.81 -13.86 16 8 H 0.07 3.62 7.89 -2.91 -0.02 3.59 16 9 N -0.61 -31.14 2.99 -698.23 -2.09 -33.23 16 10 C 0.14 6.42 6.54 86.51 0.57 6.99 16 11 C -0.12 -4.55 5.67 30.82 0.17 -4.37 16 12 C 0.18 6.35 2.41 45.02 0.11 6.46 16 13 N -0.73 -19.70 5.08 -457.67 -2.33 -22.02 16 14 C 0.70 20.98 8.53 179.06 1.53 22.51 16 15 O -0.64 -25.39 15.57 -4.02 -0.06 -25.45 16 16 N -0.70 -14.67 5.55 -458.48 -2.55 -17.22 16 17 C 0.09 1.84 6.43 44.85 0.29 2.13 16 18 H 0.11 2.85 7.40 -2.39 -0.02 2.83 16 19 C -0.15 -2.10 10.46 30.50 0.32 -1.78 16 20 C -0.16 -2.35 3.02 -52.33 -0.16 -2.51 16 21 C -0.10 -1.13 8.08 30.98 0.25 -0.88 16 22 C -0.13 -1.28 8.08 31.19 0.25 -1.03 16 23 C -0.10 -1.32 8.10 30.98 0.25 -1.07 16 24 C -0.13 -4.55 5.55 30.67 0.17 -4.38 16 25 C 0.18 8.59 5.31 86.36 0.46 9.05 16 26 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 27 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 28 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 29 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.05 2.25 7.58 -2.39 -0.02 2.24 16 32 H 0.41 8.17 8.62 -92.71 -0.80 7.37 16 33 H 0.41 5.93 8.84 -92.71 -0.82 5.12 16 34 H 0.11 1.31 8.14 -2.39 -0.02 1.30 16 35 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.08 2.42 8.14 -2.39 -0.02 2.41 16 44 H 0.06 3.49 6.04 -2.39 -0.01 3.48 16 45 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 Total: -1.00 -70.10 360.55 0.05 -70.06 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -0.63 Total: 21.57 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 5.43 Total: 14.88 kcal Atomic # 7 Polarization: -120.96 SS G_CDS: -6.72 Total: -127.68 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.06 Total: -25.45 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -70.10 0.05 -70.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872880511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.306 kcal (2) G-P(sol) polarization free energy of solvation -70.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds