Wall clock time and date at job start Tue Mar 31 2020 06:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00082 * 2 1 4 4 H 1.48503 * 109.47513 * 274.06597 * 3 2 1 5 5 H 1.48499 * 109.47084 * 34.06570 * 3 2 1 6 6 H 1.48498 * 109.47383 * 154.06262 * 3 2 1 7 7 C 1.38813 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00150 * 197.50778 * 7 2 1 9 9 N 1.36934 * 120.00283 * 17.49757 * 7 2 1 10 10 C 1.46918 * 120.63742 * 207.96272 * 9 7 2 11 11 C 1.53186 * 108.78053 * 233.63365 * 10 9 7 12 12 C 1.53038 * 109.31192 * 305.36534 * 11 10 9 13 13 N 1.46505 * 109.45913 * 181.38422 * 12 11 10 14 14 C 1.34777 * 119.99791 * 154.69809 * 13 12 11 15 15 O 1.21589 * 120.00279 * 0.27154 * 14 13 12 16 16 N 1.34773 * 119.99985 * 180.27362 * 14 13 12 17 17 C 1.46504 * 120.00154 * 179.97438 * 16 14 13 18 18 H 1.08992 * 115.55790 * 350.65641 * 17 16 14 19 19 C 1.53121 * 117.51380 * 136.39344 * 17 16 14 20 20 C 1.52460 * 59.85656 * 107.44605 * 19 17 16 21 21 C 1.53254 * 128.58235 * 117.60499 * 20 19 17 22 22 C 1.53888 * 86.88750 * 114.94112 * 21 20 19 23 23 C 1.53263 * 128.58369 * 242.39563 * 20 19 17 24 24 C 1.53035 * 109.53066 * 61.37070 * 12 11 10 25 25 C 1.46933 * 120.62572 * 27.99018 * 9 7 2 26 26 H 0.96996 * 119.99565 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.59074 * 113.84246 * 10 9 7 28 28 H 1.09001 * 109.58817 * 353.42512 * 10 9 7 29 29 H 1.09003 * 109.50171 * 185.40916 * 11 10 9 30 30 H 1.08998 * 109.49632 * 65.31463 * 11 10 9 31 31 H 1.09002 * 109.46186 * 301.35500 * 12 11 10 32 32 H 0.96994 * 120.00290 * 334.96878 * 13 12 11 33 33 H 0.97007 * 120.00242 * 0.02562 * 16 14 13 34 34 H 1.08994 * 117.51253 * 214.89851 * 19 17 16 35 35 H 1.09006 * 117.51051 * 359.97438 * 19 17 16 36 36 H 1.09004 * 113.64297 * 229.43887 * 21 20 19 37 37 H 1.09005 * 113.64909 * 0.43829 * 21 20 19 38 38 H 1.08994 * 113.58408 * 270.39209 * 22 21 20 39 39 H 1.08993 * 113.58768 * 139.56818 * 22 21 20 40 40 H 1.09000 * 113.64764 * 359.55760 * 23 20 19 41 41 H 1.09000 * 113.64415 * 130.47370 * 23 20 19 42 42 H 1.09000 * 109.49885 * 58.57729 * 24 12 11 43 43 H 1.09003 * 109.50395 * 178.67910 * 24 12 11 44 44 H 1.09006 * 109.58589 * 246.15071 * 25 9 7 45 45 H 1.08994 * 109.58728 * 6.58053 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4118 2.0961 -1.3965 5 1 1.4933 2.6263 0.7842 6 1 3.5881 1.4169 0.6124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0528 -1.2240 0.2808 9 7 1.3732 -2.3605 -0.3576 10 6 1.8151 -3.6544 0.1800 11 6 2.0771 -4.6102 -0.9880 12 6 0.8273 -4.6890 -1.8676 13 7 1.0629 -5.6278 -2.9674 14 6 0.0229 -6.2515 -3.5554 15 8 -1.1113 -6.0314 -3.1765 16 7 0.2400 -7.1193 -4.5635 17 6 -0.8905 -7.7978 -5.2023 18 1 -1.8540 -7.6729 -4.7083 19 6 -0.8862 -7.8934 -6.7305 20 6 -0.6159 -9.1330 -5.8851 21 6 -1.4263 -10.4314 -5.8063 22 6 -0.1991 -11.1354 -6.4116 23 6 0.6512 -9.9932 -5.8279 24 6 0.5149 -3.3036 -2.4379 25 6 0.2349 -2.3330 -1.2863 26 1 -0.4849 0.8400 -0.0004 27 1 1.0380 -4.0676 0.8231 28 1 2.7321 -3.5179 0.7533 29 1 2.3128 -5.6016 -0.6010 30 1 2.9153 -4.2412 -1.5790 31 1 -0.0163 -5.0343 -1.2699 32 1 1.9676 -5.8034 -3.2698 33 1 1.1449 -7.2953 -4.8656 34 1 -1.8470 -7.8320 -7.2415 35 1 -0.0425 -7.4510 -7.2604 36 1 -1.6515 -10.7448 -4.7869 37 1 -2.3009 -10.4411 -6.4567 38 1 -0.2049 -11.1620 -7.5012 39 1 0.0106 -12.1073 -5.9649 40 1 1.4421 -9.6516 -6.4957 41 1 1.0050 -10.1835 -4.8146 42 1 1.3680 -2.9470 -3.0152 43 1 -0.3615 -3.3648 -3.0831 44 1 -0.6712 -2.6385 -0.7629 45 1 0.1093 -1.3247 -1.6806 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872880512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:29 Heat of formation + Delta-G solvation = 36.494176 kcal Electronic energy + Delta-G solvation = -23552.326640 eV Core-core repulsion = 20185.734459 eV Total energy + Delta-G solvation = -3366.592182 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.32678 -39.29358 -37.38939 -34.99162 -34.29765 -32.47350 -31.48385 -29.93275 -29.21417 -26.04018 -25.01556 -23.35678 -22.77635 -22.18280 -21.50600 -20.56112 -19.43650 -18.75806 -18.01906 -16.83761 -16.45969 -15.57147 -15.24672 -15.13624 -14.93336 -14.66604 -14.03171 -13.70276 -13.46366 -13.05633 -12.96437 -12.80389 -12.64200 -12.46801 -12.30569 -11.86998 -11.71804 -11.45074 -11.10259 -10.98379 -10.81299 -10.72556 -10.62436 -10.35397 -10.20214 -10.12215 -10.07144 -9.94940 -9.72746 -9.51832 -8.84633 -8.52697 -8.34181 -6.66348 -5.76110 -3.18980 2.70758 3.21658 3.39445 3.46219 3.47778 3.67714 4.13344 4.29783 4.39994 4.48536 4.51454 4.56511 4.62188 5.05515 5.32226 5.36480 5.39663 5.42054 5.43530 5.49193 5.51103 5.55936 5.67632 5.68867 5.74397 5.87535 5.98088 6.03950 6.12751 6.27175 6.40066 6.48669 6.50204 6.63531 6.68671 6.80543 6.93910 6.98324 7.14763 7.42420 7.71596 7.82179 8.16991 8.47520 8.79099 9.23385 9.86839 10.43724 11.32418 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.040204 B = 0.002696 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.275589 B =10384.413438 C =10598.280302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.149 3.851 11 C -0.138 4.138 12 C 0.169 3.831 13 N -0.739 5.739 14 C 0.705 3.295 15 O -0.587 6.587 16 N -0.721 5.721 17 C 0.124 3.876 18 H 0.138 0.862 19 C -0.164 4.164 20 C -0.175 4.175 21 C -0.098 4.098 22 C -0.136 4.136 23 C -0.100 4.100 24 C -0.147 4.147 25 C 0.174 3.826 26 H 0.254 0.746 27 H 0.021 0.979 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.390 0.610 33 H 0.394 0.606 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.021 0.979 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.065 -20.421 -13.227 24.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.021 3.979 11 C -0.178 4.178 12 C 0.065 3.935 13 N -0.392 5.392 14 C 0.405 3.595 15 O -0.464 6.464 16 N -0.374 5.374 17 C 0.017 3.983 18 H 0.155 0.845 19 C -0.203 4.203 20 C -0.176 4.176 21 C -0.135 4.135 22 C -0.173 4.173 23 C -0.137 4.137 24 C -0.187 4.187 25 C 0.047 3.953 26 H 0.064 0.936 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.222 0.778 33 H 0.227 0.773 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.039 0.961 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.905 -20.017 -12.788 23.770 hybrid contribution 1.305 0.725 -0.487 1.570 sum 2.209 -19.292 -13.275 23.522 Atomic orbital electron populations 1.70049 1.05261 1.25516 1.53639 1.25064 0.95276 0.98460 1.00881 0.86278 0.79132 0.83788 0.77572 1.21513 1.21788 1.20407 1.19190 0.92729 0.84894 1.41556 0.91624 1.44116 1.36409 1.01400 1.49633 1.20836 0.97971 0.86729 0.92315 1.22345 0.96817 0.99673 0.99011 1.20919 0.98552 0.88219 0.85815 1.45523 1.07699 1.47223 1.38775 1.15951 0.85347 0.78737 0.79478 1.90927 1.21216 1.67879 1.66409 1.44447 1.08887 1.46541 1.37485 1.21302 0.91819 0.93954 0.91271 0.84474 1.23397 1.03487 0.98526 0.94923 1.22881 0.99568 0.89254 1.05920 1.22448 0.96769 0.92893 1.01406 1.22728 0.96635 0.97475 1.00509 1.22402 0.94854 0.95185 1.01301 1.22576 1.00460 0.95220 1.00445 1.20763 0.88728 0.98155 0.87625 0.93596 0.96155 0.92350 0.92682 0.91927 0.90045 0.77763 0.77267 0.87894 0.88435 0.89606 0.91254 0.90141 0.91347 0.91536 0.89674 0.92827 0.92807 0.96093 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 11.22 55.49 0.62 -25.96 16 2 C 0.00 0.06 4.90 -17.43 -0.09 -0.03 16 3 Si 0.90 21.81 29.59 -169.99 -5.03 16.78 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.25 -6.98 9.58 -15.06 -0.14 -7.13 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.95 2.99 -172.32 -0.52 -15.47 16 10 C 0.15 3.09 6.51 -3.72 -0.02 3.06 16 11 C -0.14 -2.32 5.55 -26.62 -0.15 -2.47 16 12 C 0.17 3.01 2.42 -67.89 -0.16 2.85 16 13 N -0.74 -10.67 5.08 -58.63 -0.30 -10.97 16 14 C 0.70 11.01 8.53 -86.92 -0.74 10.27 16 15 O -0.59 -11.84 15.57 5.29 0.08 -11.76 16 16 N -0.72 -8.23 5.55 -58.89 -0.33 -8.56 16 17 C 0.12 1.34 6.43 -68.14 -0.44 0.90 16 18 H 0.14 1.76 7.40 -51.93 -0.38 1.38 16 19 C -0.16 -1.40 10.46 -26.95 -0.28 -1.68 16 20 C -0.17 -1.44 3.01 -154.80 -0.47 -1.91 16 21 C -0.10 -0.71 8.10 -26.14 -0.21 -0.92 16 22 C -0.14 -0.86 8.08 -25.81 -0.21 -1.06 16 23 C -0.10 -0.70 8.08 -26.13 -0.21 -0.91 16 24 C -0.15 -3.00 5.65 -26.61 -0.15 -3.15 16 25 C 0.17 4.30 5.31 -3.70 -0.02 4.28 16 26 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.65 7.57 -51.93 -0.39 1.26 16 32 H 0.39 4.37 8.62 -40.82 -0.35 4.02 16 33 H 0.39 3.40 8.84 -40.82 -0.36 3.04 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 LS Contribution 360.55 15.07 5.43 5.43 Total: -1.00 -32.32 360.55 -11.01 -43.34 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.68 Total: 5.07 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -3.30 Total: 2.10 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.52 Total: -60.95 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.32 -11.01 -43.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872880512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.830 kcal (2) G-P(sol) polarization free energy of solvation -32.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds