Wall clock time and date at job start Tue Mar 31 2020 06:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00082 * 2 1 4 4 H 1.48503 * 109.47513 * 274.06597 * 3 2 1 5 5 H 1.48499 * 109.47084 * 34.06570 * 3 2 1 6 6 H 1.48498 * 109.47383 * 154.06262 * 3 2 1 7 7 C 1.38813 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00150 * 197.50778 * 7 2 1 9 9 N 1.36934 * 120.00283 * 17.49757 * 7 2 1 10 10 C 1.46918 * 120.63742 * 207.96272 * 9 7 2 11 11 C 1.53186 * 108.78053 * 233.63365 * 10 9 7 12 12 C 1.53038 * 109.31192 * 305.36534 * 11 10 9 13 13 N 1.46505 * 109.45913 * 181.38422 * 12 11 10 14 14 C 1.34777 * 119.99791 * 154.69809 * 13 12 11 15 15 O 1.21589 * 120.00279 * 0.27154 * 14 13 12 16 16 N 1.34773 * 119.99985 * 180.27362 * 14 13 12 17 17 C 1.46504 * 120.00154 * 179.97438 * 16 14 13 18 18 H 1.08992 * 115.55790 * 350.65641 * 17 16 14 19 19 C 1.53121 * 117.51380 * 136.39344 * 17 16 14 20 20 C 1.52460 * 59.85656 * 107.44605 * 19 17 16 21 21 C 1.53254 * 128.58235 * 117.60499 * 20 19 17 22 22 C 1.53888 * 86.88750 * 114.94112 * 21 20 19 23 23 C 1.53263 * 128.58369 * 242.39563 * 20 19 17 24 24 C 1.53035 * 109.53066 * 61.37070 * 12 11 10 25 25 C 1.46933 * 120.62572 * 27.99018 * 9 7 2 26 26 H 0.96996 * 119.99565 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.59074 * 113.84246 * 10 9 7 28 28 H 1.09001 * 109.58817 * 353.42512 * 10 9 7 29 29 H 1.09003 * 109.50171 * 185.40916 * 11 10 9 30 30 H 1.08998 * 109.49632 * 65.31463 * 11 10 9 31 31 H 1.09002 * 109.46186 * 301.35500 * 12 11 10 32 32 H 0.96994 * 120.00290 * 334.96878 * 13 12 11 33 33 H 0.97007 * 120.00242 * 0.02562 * 16 14 13 34 34 H 1.08994 * 117.51253 * 214.89851 * 19 17 16 35 35 H 1.09006 * 117.51051 * 359.97438 * 19 17 16 36 36 H 1.09004 * 113.64297 * 229.43887 * 21 20 19 37 37 H 1.09005 * 113.64909 * 0.43829 * 21 20 19 38 38 H 1.08994 * 113.58408 * 270.39209 * 22 21 20 39 39 H 1.08993 * 113.58768 * 139.56818 * 22 21 20 40 40 H 1.09000 * 113.64764 * 359.55760 * 23 20 19 41 41 H 1.09000 * 113.64415 * 130.47370 * 23 20 19 42 42 H 1.09000 * 109.49885 * 58.57729 * 24 12 11 43 43 H 1.09003 * 109.50395 * 178.67910 * 24 12 11 44 44 H 1.09006 * 109.58589 * 246.15071 * 25 9 7 45 45 H 1.08994 * 109.58728 * 6.58053 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4118 2.0961 -1.3965 5 1 1.4933 2.6263 0.7842 6 1 3.5881 1.4169 0.6124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0528 -1.2240 0.2808 9 7 1.3732 -2.3605 -0.3576 10 6 1.8151 -3.6544 0.1800 11 6 2.0771 -4.6102 -0.9880 12 6 0.8273 -4.6890 -1.8676 13 7 1.0629 -5.6278 -2.9674 14 6 0.0229 -6.2515 -3.5554 15 8 -1.1113 -6.0314 -3.1765 16 7 0.2400 -7.1193 -4.5635 17 6 -0.8905 -7.7978 -5.2023 18 1 -1.8540 -7.6729 -4.7083 19 6 -0.8862 -7.8934 -6.7305 20 6 -0.6159 -9.1330 -5.8851 21 6 -1.4263 -10.4314 -5.8063 22 6 -0.1991 -11.1354 -6.4116 23 6 0.6512 -9.9932 -5.8279 24 6 0.5149 -3.3036 -2.4379 25 6 0.2349 -2.3330 -1.2863 26 1 -0.4849 0.8400 -0.0004 27 1 1.0380 -4.0676 0.8231 28 1 2.7321 -3.5179 0.7533 29 1 2.3128 -5.6016 -0.6010 30 1 2.9153 -4.2412 -1.5790 31 1 -0.0163 -5.0343 -1.2699 32 1 1.9676 -5.8034 -3.2698 33 1 1.1449 -7.2953 -4.8656 34 1 -1.8470 -7.8320 -7.2415 35 1 -0.0425 -7.4510 -7.2604 36 1 -1.6515 -10.7448 -4.7869 37 1 -2.3009 -10.4411 -6.4567 38 1 -0.2049 -11.1620 -7.5012 39 1 0.0106 -12.1073 -5.9649 40 1 1.4421 -9.6516 -6.4957 41 1 1.0050 -10.1835 -4.8146 42 1 1.3680 -2.9470 -3.0152 43 1 -0.3615 -3.3648 -3.0831 44 1 -0.6712 -2.6385 -0.7629 45 1 0.1093 -1.3247 -1.6806 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872880512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:28 Heat of formation + Delta-G solvation = 15.524856 kcal Electronic energy + Delta-G solvation = -23553.235938 eV Core-core repulsion = 20185.734459 eV Total energy + Delta-G solvation = -3367.501480 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.37349 -40.24599 -38.98008 -36.11169 -35.73349 -34.02687 -32.78740 -31.65621 -30.87123 -26.93014 -26.57485 -24.20847 -23.90211 -23.88641 -22.75227 -21.78090 -21.07249 -19.63985 -19.11661 -18.61251 -17.62468 -16.85634 -16.23392 -16.18231 -16.09423 -16.06173 -15.54990 -15.35252 -15.06149 -14.74628 -14.38449 -14.08334 -13.70499 -13.36888 -13.19957 -13.16496 -13.02342 -12.63446 -12.60912 -12.44393 -12.30118 -12.12209 -12.02566 -11.86599 -11.66281 -11.53387 -11.45136 -11.25318 -11.13407 -10.79465 -10.58433 -10.10602 -9.44772 -8.71932 -7.87147 -5.33459 1.47756 1.49134 1.58732 1.61339 2.08183 2.51970 2.87778 3.16490 3.29613 3.58579 3.67065 3.74327 3.82446 3.88586 3.94902 3.97675 4.10342 4.34847 4.48233 4.52395 4.60989 4.67672 4.80475 4.84588 4.85871 4.87128 4.88759 4.96429 5.06498 5.09136 5.10760 5.12840 5.13735 5.32384 5.40150 5.45862 5.52364 5.56695 5.60446 5.64465 5.69493 6.04157 6.38772 7.12419 7.13774 7.61018 7.84401 8.37479 9.20088 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.040204 B = 0.002696 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.275589 B =10384.413438 C =10598.280302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.056 4.056 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.260 4.260 8 H 0.075 0.925 9 N -0.609 5.609 10 C 0.141 3.859 11 C -0.120 4.120 12 C 0.181 3.819 13 N -0.724 5.724 14 C 0.701 3.299 15 O -0.638 6.638 16 N -0.700 5.700 17 C 0.090 3.910 18 H 0.108 0.892 19 C -0.151 4.151 20 C -0.162 4.162 21 C -0.104 4.104 22 C -0.129 4.129 23 C -0.098 4.098 24 C -0.130 4.130 25 C 0.183 3.817 26 H 0.249 0.751 27 H 0.011 0.989 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.411 0.589 33 H 0.411 0.589 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.042 0.958 44 H -0.012 1.012 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.758 -22.344 -14.790 27.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.251 4.251 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.225 1.225 6 H -0.187 1.187 7 C -0.390 4.390 8 H 0.093 0.907 9 N -0.333 5.333 10 C 0.015 3.985 11 C -0.159 4.159 12 C 0.075 3.925 13 N -0.378 5.378 14 C 0.401 3.599 15 O -0.519 6.519 16 N -0.353 5.353 17 C -0.017 4.017 18 H 0.126 0.874 19 C -0.190 4.190 20 C -0.164 4.164 21 C -0.142 4.142 22 C -0.166 4.166 23 C -0.136 4.136 24 C -0.170 4.170 25 C 0.056 3.944 26 H 0.058 0.942 27 H 0.029 0.971 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.247 0.753 33 H 0.248 0.752 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.006 0.994 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.674 -22.012 -14.395 26.556 hybrid contribution 0.411 1.237 0.003 1.303 sum 4.085 -20.775 -14.391 25.601 Atomic orbital electron populations 1.70224 1.06955 1.25852 1.55515 1.25895 0.95998 1.01879 1.01345 0.85209 0.78313 0.79356 0.77315 1.21389 1.22482 1.18712 1.19592 0.93221 0.85852 1.40360 0.90732 1.44363 1.36147 1.02628 1.50162 1.21051 0.97914 0.85525 0.93997 1.22134 0.96178 1.00439 0.97194 1.20513 0.98439 0.87033 0.86487 1.45078 1.08646 1.46252 1.37859 1.16130 0.84604 0.79134 0.80031 1.90903 1.23387 1.69585 1.68073 1.44180 1.10071 1.45083 1.35978 1.21315 0.90701 0.96875 0.92801 0.87376 1.23440 1.04343 0.98206 0.92962 1.23019 1.01054 0.88670 1.03635 1.22541 0.97580 0.92532 1.01531 1.22715 0.95298 0.97587 1.00993 1.22458 0.94581 0.94850 1.01689 1.22315 1.00186 0.96047 0.98460 1.20462 0.87909 0.97317 0.88682 0.94198 0.97073 0.91224 0.89032 0.90503 0.92764 0.75262 0.75231 0.87263 0.87261 0.90040 0.90765 0.89271 0.90455 0.90291 0.89747 0.92024 0.93958 0.99371 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.53 11.22 21.65 0.24 -57.29 16 2 C -0.06 -3.19 4.90 84.86 0.42 -2.77 16 3 Si 0.97 45.28 29.59 68.60 2.03 47.31 16 4 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.26 -14.31 9.58 84.03 0.81 -13.51 16 8 H 0.08 3.90 7.89 -2.91 -0.02 3.88 16 9 N -0.61 -31.04 2.99 -699.10 -2.09 -33.13 16 10 C 0.14 5.71 6.51 86.36 0.56 6.27 16 11 C -0.12 -3.70 5.55 30.67 0.17 -3.53 16 12 C 0.18 6.31 2.42 45.01 0.11 6.42 16 13 N -0.72 -19.55 5.08 -457.68 -2.33 -21.87 16 14 C 0.70 21.46 8.53 179.06 1.53 22.99 16 15 O -0.64 -26.50 15.57 -4.00 -0.06 -26.56 16 16 N -0.70 -14.96 5.55 -458.48 -2.55 -17.51 16 17 C 0.09 1.89 6.43 44.85 0.29 2.18 16 18 H 0.11 2.93 7.40 -2.39 -0.02 2.91 16 19 C -0.15 -2.28 10.46 30.46 0.32 -1.96 16 20 C -0.16 -2.37 3.01 -52.37 -0.16 -2.52 16 21 C -0.10 -1.34 8.10 30.98 0.25 -1.09 16 22 C -0.13 -1.25 8.08 31.19 0.25 -1.00 16 23 C -0.10 -1.09 8.08 30.98 0.25 -0.83 16 24 C -0.13 -5.38 5.65 30.67 0.17 -5.20 16 25 C 0.18 9.45 5.31 86.36 0.46 9.91 16 26 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 27 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.07 2.65 7.93 -2.39 -0.02 2.63 16 29 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.05 2.23 7.57 -2.39 -0.02 2.21 16 32 H 0.41 7.78 8.62 -92.71 -0.80 6.98 16 33 H 0.41 5.94 8.84 -92.70 -0.82 5.12 16 34 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 0.64 8.14 -2.39 -0.02 0.63 16 40 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 44 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 45 H 0.05 3.16 6.06 -2.39 -0.01 3.14 16 Total: -1.00 -73.27 360.55 0.04 -73.23 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -0.63 Total: 20.49 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 5.42 Total: 15.34 kcal Atomic # 7 Polarization: -123.09 SS G_CDS: -6.72 Total: -129.81 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.06 Total: -26.56 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -73.27 0.04 -73.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872880512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.752 kcal (2) G-P(sol) polarization free energy of solvation -73.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds