Wall clock time and date at job start Tue Mar 31 2020 06:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99688 * 2 1 4 4 H 1.48507 * 109.47196 * 240.00211 * 3 2 1 5 5 H 1.48494 * 109.47248 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47071 * 120.00419 * 3 2 1 7 7 C 1.37878 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00328 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99809 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47306 * 179.97438 * 9 7 2 11 11 C 1.46892 * 111.00059 * 169.99871 * 10 9 7 12 12 C 1.53248 * 109.33928 * 187.25645 * 11 10 9 13 13 N 1.47086 * 108.52005 * 306.17140 * 12 11 10 14 14 C 1.34766 * 120.88136 * 231.18784 * 13 12 11 15 15 O 1.21589 * 120.00381 * 184.99749 * 14 13 12 16 16 N 1.34779 * 120.00087 * 4.99051 * 14 13 12 17 17 C 1.46506 * 120.00200 * 174.91856 * 16 14 13 18 18 H 1.09000 * 115.57640 * 9.23296 * 17 16 14 19 19 C 1.53120 * 117.51432 * 223.46721 * 17 16 14 20 20 C 1.52459 * 117.51444 * 155.00270 * 17 16 14 21 21 C 1.53253 * 128.58331 * 349.85048 * 20 17 16 22 22 C 1.53886 * 86.88290 * 194.88859 * 21 20 17 23 23 C 1.53252 * 128.58468 * 225.04880 * 20 17 16 24 24 C 1.47082 * 118.23459 * 51.45515 * 13 12 11 25 25 C 1.46903 * 110.99945 * 294.30796 * 10 9 7 26 26 H 0.96997 * 120.00351 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46945 * 60.00139 * 9 7 2 28 28 H 1.08997 * 109.47717 * 300.00138 * 9 7 2 29 29 H 1.09002 * 109.49497 * 67.29727 * 11 10 9 30 30 H 1.08994 * 109.49667 * 307.21336 * 11 10 9 31 31 H 1.08996 * 109.62769 * 186.46276 * 12 11 10 32 32 H 1.09003 * 109.62759 * 65.87813 * 12 11 10 33 33 H 0.96996 * 120.00407 * 354.92386 * 16 14 13 34 34 H 1.08998 * 117.51429 * 145.10090 * 19 17 16 35 35 H 1.09005 * 117.54619 * 359.97438 * 19 17 16 36 36 H 1.08994 * 113.64841 * 80.39185 * 21 20 17 37 37 H 1.09001 * 113.72927 * 309.39315 * 21 20 17 38 38 H 1.09005 * 113.59086 * 139.56988 * 22 21 20 39 39 H 1.08997 * 113.59026 * 270.39343 * 22 21 20 40 40 H 1.09004 * 113.64069 * 50.61601 * 23 20 17 41 41 H 1.08999 * 113.65089 * 279.61251 * 23 20 17 42 42 H 1.09002 * 109.62660 * 68.25203 * 24 13 12 43 43 H 1.08997 * 109.62735 * 188.83266 * 24 13 12 44 44 H 1.09008 * 109.48847 * 292.69985 * 25 10 9 45 45 H 1.08990 * 109.49716 * 52.77926 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5214 -4.8935 0.2363 12 6 2.5642 -6.0033 0.4079 13 7 3.4612 -5.9858 -0.7576 14 6 3.7110 -7.1116 -1.4552 15 8 4.5241 -7.0990 -2.3591 16 7 3.0595 -8.2515 -1.1508 17 6 3.2472 -9.4459 -1.9782 18 1 4.0416 -9.3830 -2.7220 19 6 2.0009 -10.2579 -2.3414 20 6 2.9994 -10.8011 -1.3253 21 6 2.7764 -11.1215 0.1567 22 6 3.0411 -12.5929 -0.2081 23 6 3.8516 -12.0721 -1.4081 24 6 4.0830 -4.7084 -1.1380 25 6 2.9759 -3.6484 -1.2523 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5566 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 0.8792 -5.1261 -0.6131 30 1 0.9170 -4.8196 1.1403 31 1 2.0637 -6.9696 0.4703 32 1 3.1406 -5.8270 1.3161 33 1 2.4662 -8.2812 -0.3840 34 1 1.9756 -10.7291 -3.3239 35 1 1.0412 -9.9041 -1.9645 36 1 1.7583 -10.9318 0.4966 37 1 3.5303 -10.6923 0.8166 38 1 3.6444 -13.1233 0.5286 39 1 2.1425 -13.1400 -0.4933 40 1 4.9057 -11.9069 -1.1850 41 1 3.6956 -12.6443 -2.3226 42 1 4.8025 -4.4100 -0.3755 43 1 4.5871 -4.8181 -2.0982 44 1 2.3134 -3.8983 -2.0810 45 1 3.4261 -2.6715 -1.4279 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873268147.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:23 Heat of formation + Delta-G solvation = 37.060741 kcal Electronic energy + Delta-G solvation = -23692.955881 eV Core-core repulsion = 20326.388267 eV Total energy + Delta-G solvation = -3366.567614 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.49971 -39.45015 -37.55780 -35.02564 -34.41261 -32.51851 -31.90968 -30.50867 -28.10934 -26.03610 -25.50204 -23.45920 -23.34734 -22.51589 -21.81524 -20.64263 -19.42622 -18.69860 -17.84359 -16.63072 -16.29383 -15.56816 -15.44521 -15.33418 -14.96723 -14.68675 -14.45557 -13.89204 -13.78366 -13.53364 -13.18855 -13.01310 -12.67540 -12.51065 -12.17922 -11.99713 -11.86327 -11.70900 -11.29957 -11.17020 -10.89280 -10.82949 -10.76795 -10.62458 -10.60455 -10.52481 -10.13807 -9.99342 -9.85687 -9.29769 -8.82618 -8.48254 -8.29900 -7.33801 -6.06710 -4.08627 2.61631 3.13605 3.32049 3.36141 3.38994 3.63558 3.79562 4.24684 4.34604 4.38830 4.49221 4.51453 4.60471 4.77552 5.06177 5.18823 5.27844 5.32136 5.37024 5.38254 5.42524 5.44447 5.50648 5.57240 5.60533 5.68367 5.72541 5.82796 5.94806 5.99164 6.03133 6.04853 6.17972 6.40133 6.47995 6.55353 6.69163 7.05044 7.20860 7.27372 7.73321 7.97879 8.00706 8.11482 8.46781 8.66053 8.98425 9.55990 11.04114 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.038010 B = 0.002807 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.464734 B = 9974.426026 C =10297.083548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.041 3.959 12 C 0.118 3.882 13 N -0.624 5.624 14 C 0.711 3.289 15 O -0.595 6.595 16 N -0.719 5.719 17 C 0.121 3.879 18 H 0.137 0.863 19 C -0.164 4.164 20 C -0.174 4.174 21 C -0.101 4.101 22 C -0.136 4.136 23 C -0.097 4.097 24 C 0.133 3.867 25 C 0.051 3.949 26 H 0.262 0.738 27 H -0.009 1.009 28 H 0.031 0.969 29 H 0.026 0.974 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.396 0.604 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.025 0.975 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.050 -23.000 -0.161 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.260 5.260 11 C -0.089 4.089 12 C -0.005 4.005 13 N -0.361 5.361 14 C 0.413 3.587 15 O -0.474 6.474 16 N -0.374 5.374 17 C 0.014 3.986 18 H 0.155 0.845 19 C -0.203 4.203 20 C -0.175 4.175 21 C -0.138 4.138 22 C -0.173 4.173 23 C -0.135 4.135 24 C 0.010 3.990 25 C -0.079 4.079 26 H 0.072 0.928 27 H 0.009 0.991 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.233 0.767 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.043 0.957 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.811 -22.729 -0.440 23.237 hybrid contribution -0.757 0.819 -0.203 1.134 sum 4.054 -21.910 -0.643 22.291 Atomic orbital electron populations 1.69942 1.06102 1.26986 1.50772 1.24990 0.94869 0.99371 0.95325 0.86544 0.79428 0.82641 0.78709 1.20213 1.21379 1.20118 1.21105 0.93485 0.89861 1.50416 0.91801 1.19717 0.89982 0.87201 0.96141 1.62076 1.27925 1.02423 1.33588 1.22379 0.94717 0.90962 1.00846 1.21772 0.91924 0.98137 0.88694 1.47410 1.49539 1.07900 1.31244 1.15758 0.80942 0.80097 0.81921 1.90878 1.37877 1.84561 1.34065 1.44574 1.50173 1.09671 1.32940 1.21314 0.99566 0.80956 0.96731 0.84520 1.23405 0.95029 1.02761 0.99097 1.22875 1.03174 0.95493 0.96002 1.22408 1.01808 0.96190 0.93424 1.22729 1.00386 0.96070 0.98137 1.22444 0.98414 0.93859 0.98749 1.21848 0.95367 0.80415 1.01321 1.22458 0.95196 0.99213 0.90990 0.92815 0.99140 0.95081 0.95538 0.90108 0.91415 0.90548 0.76721 0.87858 0.88362 0.91430 0.89636 0.91320 0.90114 0.89629 0.91274 0.91093 0.89322 0.95713 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.34 13.29 55.43 0.74 -25.61 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -13.97 8.41 -34.44 -0.29 -14.26 16 8 H 0.06 1.72 7.13 -52.49 -0.37 1.34 16 9 C 0.19 4.92 4.72 -4.98 -0.02 4.90 16 10 N -0.53 -11.05 4.62 -235.47 -1.09 -12.13 16 11 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 12 C 0.12 1.59 6.59 -3.59 -0.02 1.56 16 13 N -0.62 -9.67 3.00 -177.90 -0.53 -10.21 16 14 C 0.71 11.27 8.31 -86.92 -0.72 10.55 16 15 O -0.60 -11.42 15.39 5.29 0.08 -11.34 16 16 N -0.72 -8.71 5.46 -58.88 -0.32 -9.03 16 17 C 0.12 1.32 6.44 -68.14 -0.44 0.88 16 18 H 0.14 1.71 7.39 -51.93 -0.38 1.32 16 19 C -0.16 -1.42 10.46 -26.95 -0.28 -1.70 16 20 C -0.17 -1.46 3.01 -154.80 -0.47 -1.93 16 21 C -0.10 -0.74 8.08 -26.14 -0.21 -0.95 16 22 C -0.14 -0.87 8.08 -25.81 -0.21 -1.08 16 23 C -0.10 -0.70 8.10 -26.14 -0.21 -0.91 16 24 C 0.13 2.23 6.61 -3.37 -0.02 2.21 16 25 C 0.05 0.98 5.47 -3.46 -0.02 0.96 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 28 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 1.28 7.99 -51.93 -0.41 0.86 16 31 H 0.07 0.69 5.63 -51.93 -0.29 0.40 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.40 4.00 6.32 -40.82 -0.26 3.74 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.09 1.50 7.09 -51.93 -0.37 1.13 16 44 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 45 H 0.10 2.00 6.67 -51.93 -0.35 1.65 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -31.61 358.31 -11.27 -42.87 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.48 Total: 1.37 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -3.04 Total: 2.34 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -1.21 Total: -56.98 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.61 -11.27 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873268147.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.932 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds