Wall clock time and date at job start Tue Mar 31 2020 06:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99688 * 2 1 4 4 H 1.48507 * 109.47196 * 240.00211 * 3 2 1 5 5 H 1.48494 * 109.47248 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47071 * 120.00419 * 3 2 1 7 7 C 1.37878 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00328 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99809 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47306 * 179.97438 * 9 7 2 11 11 C 1.46892 * 111.00059 * 169.99871 * 10 9 7 12 12 C 1.53248 * 109.33928 * 187.25645 * 11 10 9 13 13 N 1.47086 * 108.52005 * 306.17140 * 12 11 10 14 14 C 1.34766 * 120.88136 * 231.18784 * 13 12 11 15 15 O 1.21589 * 120.00381 * 184.99749 * 14 13 12 16 16 N 1.34779 * 120.00087 * 4.99051 * 14 13 12 17 17 C 1.46506 * 120.00200 * 174.91856 * 16 14 13 18 18 H 1.09000 * 115.57640 * 9.23296 * 17 16 14 19 19 C 1.53120 * 117.51432 * 223.46721 * 17 16 14 20 20 C 1.52459 * 117.51444 * 155.00270 * 17 16 14 21 21 C 1.53253 * 128.58331 * 349.85048 * 20 17 16 22 22 C 1.53886 * 86.88290 * 194.88859 * 21 20 17 23 23 C 1.53252 * 128.58468 * 225.04880 * 20 17 16 24 24 C 1.47082 * 118.23459 * 51.45515 * 13 12 11 25 25 C 1.46903 * 110.99945 * 294.30796 * 10 9 7 26 26 H 0.96997 * 120.00351 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46945 * 60.00139 * 9 7 2 28 28 H 1.08997 * 109.47717 * 300.00138 * 9 7 2 29 29 H 1.09002 * 109.49497 * 67.29727 * 11 10 9 30 30 H 1.08994 * 109.49667 * 307.21336 * 11 10 9 31 31 H 1.08996 * 109.62769 * 186.46276 * 12 11 10 32 32 H 1.09003 * 109.62759 * 65.87813 * 12 11 10 33 33 H 0.96996 * 120.00407 * 354.92386 * 16 14 13 34 34 H 1.08998 * 117.51429 * 145.10090 * 19 17 16 35 35 H 1.09005 * 117.54619 * 359.97438 * 19 17 16 36 36 H 1.08994 * 113.64841 * 80.39185 * 21 20 17 37 37 H 1.09001 * 113.72927 * 309.39315 * 21 20 17 38 38 H 1.09005 * 113.59086 * 139.56988 * 22 21 20 39 39 H 1.08997 * 113.59026 * 270.39343 * 22 21 20 40 40 H 1.09004 * 113.64069 * 50.61601 * 23 20 17 41 41 H 1.08999 * 113.65089 * 279.61251 * 23 20 17 42 42 H 1.09002 * 109.62660 * 68.25203 * 24 13 12 43 43 H 1.08997 * 109.62735 * 188.83266 * 24 13 12 44 44 H 1.09008 * 109.48847 * 292.69985 * 25 10 9 45 45 H 1.08990 * 109.49716 * 52.77926 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5214 -4.8935 0.2363 12 6 2.5642 -6.0033 0.4079 13 7 3.4612 -5.9858 -0.7576 14 6 3.7110 -7.1116 -1.4552 15 8 4.5241 -7.0990 -2.3591 16 7 3.0595 -8.2515 -1.1508 17 6 3.2472 -9.4459 -1.9782 18 1 4.0416 -9.3830 -2.7220 19 6 2.0009 -10.2579 -2.3414 20 6 2.9994 -10.8011 -1.3253 21 6 2.7764 -11.1215 0.1567 22 6 3.0411 -12.5929 -0.2081 23 6 3.8516 -12.0721 -1.4081 24 6 4.0830 -4.7084 -1.1380 25 6 2.9759 -3.6484 -1.2523 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5566 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 0.8792 -5.1261 -0.6131 30 1 0.9170 -4.8196 1.1403 31 1 2.0637 -6.9696 0.4703 32 1 3.1406 -5.8270 1.3161 33 1 2.4662 -8.2812 -0.3840 34 1 1.9756 -10.7291 -3.3239 35 1 1.0412 -9.9041 -1.9645 36 1 1.7583 -10.9318 0.4966 37 1 3.5303 -10.6923 0.8166 38 1 3.6444 -13.1233 0.5286 39 1 2.1425 -13.1400 -0.4933 40 1 4.9057 -11.9069 -1.1850 41 1 3.6956 -12.6443 -2.3226 42 1 4.8025 -4.4100 -0.3755 43 1 4.5871 -4.8181 -2.0982 44 1 2.3134 -3.8983 -2.0810 45 1 3.4261 -2.6715 -1.4279 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873268147.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:23 Heat of formation + Delta-G solvation = 16.754988 kcal Electronic energy + Delta-G solvation = -23693.836404 eV Core-core repulsion = 20326.388267 eV Total energy + Delta-G solvation = -3367.448137 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.60212 -40.31497 -38.98867 -36.02099 -35.91033 -34.41686 -32.99593 -31.82058 -29.86445 -27.24466 -26.57816 -24.83000 -24.06383 -23.89943 -23.11013 -21.96774 -20.66646 -19.54274 -18.89319 -18.48425 -17.60272 -16.81298 -16.57247 -16.26713 -16.08623 -16.03326 -15.85794 -15.42360 -15.30826 -14.97265 -14.50856 -14.05667 -13.86637 -13.46575 -13.36745 -13.20570 -13.04220 -12.77437 -12.56983 -12.44839 -12.39302 -12.34047 -12.29285 -12.17091 -11.75674 -11.66837 -11.42238 -11.23592 -11.14234 -10.79793 -10.61187 -9.96353 -9.43555 -9.04982 -8.20788 -6.30625 1.42728 1.45235 1.49428 1.53128 1.98377 2.40698 2.74457 2.85849 3.11476 3.21573 3.57455 3.71340 3.77691 3.91210 3.95323 3.97485 4.03549 4.12142 4.23872 4.42060 4.49849 4.52561 4.65698 4.69924 4.83060 4.85213 4.87088 4.87587 4.93336 4.95163 5.00513 5.10992 5.13020 5.16540 5.21773 5.40145 5.41305 5.52548 5.54534 5.63623 5.89202 6.03065 6.24643 6.57345 6.84658 6.87993 7.39169 7.46497 8.90152 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.038010 B = 0.002807 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.464734 B = 9974.426026 C =10297.083548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.525 4.525 8 H 0.066 0.934 9 C 0.210 3.790 10 N -0.538 5.538 11 C 0.038 3.962 12 C 0.127 3.873 13 N -0.628 5.628 14 C 0.708 3.292 15 O -0.633 6.633 16 N -0.703 5.703 17 C 0.090 3.910 18 H 0.115 0.885 19 C -0.152 4.152 20 C -0.162 4.162 21 C -0.102 4.102 22 C -0.129 4.129 23 C -0.101 4.101 24 C 0.145 3.855 25 C 0.057 3.943 26 H 0.264 0.736 27 H -0.042 1.042 28 H 0.012 0.988 29 H 0.018 0.982 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.408 0.592 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.009 0.991 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.494 -24.607 0.843 25.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.563 4.563 8 H 0.084 0.916 9 C 0.083 3.917 10 N -0.263 5.263 11 C -0.091 4.091 12 C 0.004 3.996 13 N -0.364 5.364 14 C 0.410 3.590 15 O -0.515 6.515 16 N -0.358 5.358 17 C -0.016 4.016 18 H 0.132 0.868 19 C -0.191 4.191 20 C -0.164 4.164 21 C -0.139 4.139 22 C -0.166 4.166 23 C -0.138 4.138 24 C 0.022 3.978 25 C -0.072 4.072 26 H 0.073 0.927 27 H -0.025 1.025 28 H 0.030 0.970 29 H 0.036 0.964 30 H 0.109 0.891 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.246 0.754 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.027 0.973 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.243 -24.392 0.589 24.956 hybrid contribution -0.927 1.227 -0.540 1.630 sum 4.316 -23.166 0.050 23.564 Atomic orbital electron populations 1.70068 1.07727 1.27979 1.51734 1.25893 0.95711 1.03165 0.94804 0.85454 0.78155 0.77983 0.79151 1.19392 1.21032 1.19135 1.21443 0.93746 0.90981 1.50104 0.91616 1.19365 0.89986 0.88750 0.93555 1.61997 1.27112 1.03077 1.34079 1.22522 0.95718 0.89986 1.00901 1.21849 0.90946 0.98577 0.88191 1.47410 1.49785 1.07401 1.31817 1.15899 0.80903 0.80822 0.81423 1.90850 1.39684 1.85247 1.35708 1.44411 1.49321 1.08899 1.33149 1.21371 1.00851 0.81646 0.97733 0.86752 1.23448 0.94390 1.01353 0.99869 1.23014 1.02545 0.93930 0.96919 1.22474 1.02335 0.96775 0.92347 1.22716 1.00585 0.95621 0.97686 1.22523 0.98318 0.93319 0.99676 1.21604 0.94260 0.80329 1.01623 1.22369 0.95418 0.99473 0.89932 0.92693 1.02460 0.97036 0.96357 0.89110 0.87576 0.89309 0.75371 0.86919 0.87670 0.90534 0.89759 0.90426 0.89336 0.89865 0.90593 0.90154 0.89658 0.97269 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.78 13.29 21.45 0.28 -55.49 16 2 C 0.00 0.13 5.46 84.66 0.46 0.60 16 3 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.52 -29.18 8.41 25.60 0.22 -28.97 16 8 H 0.07 3.56 7.13 -2.91 -0.02 3.54 16 9 C 0.21 10.93 4.72 85.56 0.40 11.34 16 10 N -0.54 -22.39 4.62 -898.89 -4.15 -26.54 16 11 C 0.04 1.23 5.62 86.39 0.49 1.72 16 12 C 0.13 3.11 6.59 86.35 0.57 3.68 16 13 N -0.63 -18.71 3.00 -835.02 -2.51 -21.22 16 14 C 0.71 21.84 8.31 179.06 1.49 23.33 16 15 O -0.63 -24.42 15.39 -4.00 -0.06 -24.48 16 16 N -0.70 -15.91 5.46 -458.47 -2.51 -18.41 16 17 C 0.09 1.87 6.44 44.85 0.29 2.16 16 18 H 0.11 2.90 7.39 -2.39 -0.02 2.89 16 19 C -0.15 -2.32 10.46 30.46 0.32 -2.00 16 20 C -0.16 -2.39 3.01 -52.37 -0.16 -2.55 16 21 C -0.10 -1.21 8.08 30.98 0.25 -0.96 16 22 C -0.13 -1.29 8.08 31.19 0.25 -1.03 16 23 C -0.10 -1.25 8.10 30.98 0.25 -1.00 16 24 C 0.15 4.81 6.61 86.50 0.57 5.39 16 25 C 0.06 2.26 5.47 86.54 0.47 2.73 16 26 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 27 H -0.04 -2.44 8.12 -2.39 -0.02 -2.46 16 28 H 0.01 0.64 7.97 -2.39 -0.02 0.62 16 29 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.09 2.77 7.99 -2.39 -0.02 2.75 16 31 H 0.11 1.79 5.63 -2.39 -0.01 1.78 16 32 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.41 7.09 6.32 -92.71 -0.59 6.50 16 34 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.09 2.91 7.09 -2.39 -0.02 2.89 16 44 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 45 H 0.08 3.42 6.67 -2.39 -0.02 3.41 16 Total: -1.00 -69.54 358.31 -0.65 -70.20 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.39 Total: 15.63 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 5.87 Total: 14.43 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -8.88 Total: -121.67 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.06 Total: -24.48 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -69.54 -0.65 -70.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873268147.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.954 kcal (2) G-P(sol) polarization free energy of solvation -69.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds