Wall clock time and date at job start Tue Mar 31 2020 06:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99789 * 2 1 4 4 H 1.48500 * 109.47174 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47184 * 299.99948 * 3 2 1 6 6 H 1.48500 * 109.47370 * 60.00251 * 3 2 1 7 7 C 1.37872 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99891 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00390 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47380 * 180.02562 * 9 7 2 11 11 C 1.46908 * 110.99659 * 294.30336 * 10 9 7 12 12 C 1.53235 * 109.33771 * 172.75078 * 11 10 9 13 13 N 1.47079 * 108.52475 * 53.82658 * 12 11 10 14 14 C 1.34770 * 120.88281 * 128.79627 * 13 12 11 15 15 O 1.21581 * 120.00455 * 175.02521 * 14 13 12 16 16 N 1.34783 * 119.99882 * 355.02632 * 14 13 12 17 17 C 1.46497 * 119.99959 * 185.08356 * 16 14 13 18 18 H 1.09004 * 115.55759 * 350.57990 * 17 16 14 19 19 C 1.53127 * 117.51359 * 136.31813 * 17 16 14 20 20 C 1.52459 * 117.51155 * 204.84613 * 17 16 14 21 21 C 1.53259 * 128.58539 * 134.95461 * 20 17 16 22 22 C 1.53884 * 86.88484 * 194.88927 * 21 20 17 23 23 C 1.53252 * 128.58836 * 10.15472 * 20 17 16 24 24 C 1.47075 * 118.23553 * 308.81551 * 13 12 11 25 25 C 1.46895 * 110.99975 * 170.00156 * 10 9 7 26 26 H 0.97001 * 120.00121 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46524 * 60.00244 * 9 7 2 28 28 H 1.09000 * 109.46898 * 300.00532 * 9 7 2 29 29 H 1.09003 * 109.48682 * 292.70559 * 11 10 9 30 30 H 1.08994 * 109.49379 * 52.78295 * 11 10 9 31 31 H 1.09005 * 109.62228 * 294.11466 * 12 11 10 32 32 H 1.09001 * 109.62907 * 173.54286 * 12 11 10 33 33 H 0.96996 * 119.99888 * 5.08369 * 16 14 13 34 34 H 1.08996 * 117.51309 * 214.89811 * 19 17 16 35 35 H 1.08999 * 117.50951 * 359.95922 * 19 17 16 36 36 H 1.09001 * 113.64338 * 309.38584 * 21 20 17 37 37 H 1.09001 * 113.64764 * 80.38531 * 21 20 17 38 38 H 1.09005 * 113.58638 * 270.39285 * 22 21 20 39 39 H 1.09001 * 113.66232 * 139.58239 * 22 21 20 40 40 H 1.09007 * 113.64523 * 279.61055 * 23 20 17 41 41 H 1.09004 * 113.64891 * 50.51896 * 23 20 17 42 42 H 1.08999 * 109.63217 * 291.47162 * 24 13 12 43 43 H 1.09000 * 109.62882 * 170.89819 * 24 13 12 44 44 H 1.09001 * 109.49253 * 307.21103 * 25 10 9 45 45 H 1.09006 * 109.49244 * 67.26630 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.9768 -3.6490 -1.2505 12 6 4.0789 -4.7077 -1.1388 13 7 3.4616 -5.9862 -0.7546 14 6 3.7116 -7.1122 -1.4517 15 8 3.2660 -8.1763 -1.0681 16 7 4.4556 -7.0586 -2.5743 17 6 4.6348 -8.2606 -3.3924 18 1 4.2737 -9.1889 -2.9496 19 6 4.5138 -8.1072 -4.9111 20 6 5.8793 -8.3361 -4.2698 21 6 6.8414 -9.5131 -4.4647 22 6 7.8159 -8.5031 -5.0958 23 6 7.1041 -7.4149 -4.2729 24 6 2.5638 -6.0031 0.4102 25 6 1.5212 -4.8935 0.2376 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.3148 -3.8992 -2.0796 30 1 3.4271 -2.6721 -1.4262 31 1 4.8002 -4.4064 -0.3791 32 1 4.5801 -4.8174 -2.1005 33 1 4.8723 -6.2241 -2.8406 34 1 4.0737 -8.9348 -5.4673 35 1 4.3002 -7.1120 -5.3012 36 1 7.2017 -9.9426 -3.5299 37 1 6.4766 -10.2647 -5.1647 38 1 7.6890 -8.3888 -6.1724 39 1 8.8553 -8.6587 -4.8066 40 1 6.9498 -6.4844 -4.8193 41 1 7.5365 -7.2591 -3.2846 42 1 3.1395 -5.8265 1.3188 43 1 2.0633 -6.9694 0.4727 44 1 0.9161 -4.8191 1.1411 45 1 0.8792 -5.1261 -0.6121 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873268148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:24 Heat of formation + Delta-G solvation = 16.745680 kcal Electronic energy + Delta-G solvation = -23752.240100 eV Core-core repulsion = 20384.791560 eV Total energy + Delta-G solvation = -3367.448541 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.60468 -40.31293 -38.99720 -35.99528 -35.92347 -34.43490 -32.99850 -31.80895 -29.89667 -27.24589 -26.57373 -24.76173 -24.17756 -23.90459 -23.04740 -21.97909 -20.66230 -19.54257 -18.87625 -18.49012 -17.61353 -16.79920 -16.57500 -16.26782 -16.08481 -16.00899 -15.88791 -15.47860 -15.29528 -14.93320 -14.51518 -14.10477 -13.78871 -13.55437 -13.32664 -13.17046 -13.03194 -12.77022 -12.61839 -12.45085 -12.42968 -12.31790 -12.28329 -12.13302 -11.78947 -11.66528 -11.31273 -11.26841 -11.14744 -10.79265 -10.62476 -9.96407 -9.43731 -9.05232 -8.20066 -6.30478 1.43311 1.44585 1.49941 1.57621 1.98164 2.41324 2.73911 2.85625 3.12483 3.21493 3.57711 3.71093 3.77899 3.91799 3.95413 3.97428 4.03229 4.13800 4.22655 4.41897 4.47226 4.52367 4.62229 4.74379 4.83036 4.85112 4.87058 4.87561 4.92590 4.94884 5.00522 5.10965 5.13119 5.17391 5.22421 5.39810 5.40654 5.52413 5.54854 5.64148 5.89259 6.02888 6.26835 6.54923 6.85325 6.87193 7.39763 7.46137 8.91597 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.003171 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.685555 B = 8826.529594 C = 9681.831640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.071 0.929 9 C 0.208 3.792 10 N -0.537 5.537 11 C 0.051 3.949 12 C 0.126 3.874 13 N -0.628 5.628 14 C 0.708 3.292 15 O -0.632 6.632 16 N -0.704 5.704 17 C 0.092 3.908 18 H 0.116 0.884 19 C -0.153 4.153 20 C -0.162 4.162 21 C -0.100 4.100 22 C -0.129 4.129 23 C -0.103 4.103 24 C 0.146 3.854 25 C 0.043 3.957 26 H 0.264 0.736 27 H -0.041 1.041 28 H 0.005 0.995 29 H 0.013 0.987 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.407 0.593 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.527 -15.332 -10.332 24.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.181 1.181 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.558 4.558 8 H 0.089 0.911 9 C 0.082 3.918 10 N -0.262 5.262 11 C -0.078 4.078 12 C 0.004 3.996 13 N -0.364 5.364 14 C 0.410 3.590 15 O -0.514 6.514 16 N -0.359 5.359 17 C -0.015 4.015 18 H 0.134 0.866 19 C -0.192 4.192 20 C -0.164 4.164 21 C -0.137 4.137 22 C -0.166 4.166 23 C -0.141 4.141 24 C 0.023 3.977 25 C -0.086 4.086 26 H 0.072 0.928 27 H -0.024 1.024 28 H 0.023 0.977 29 H 0.031 0.969 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.245 0.755 34 H 0.132 0.868 35 H 0.122 0.878 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 15.383 -15.898 -9.660 24.139 hybrid contribution -0.951 1.307 -0.577 1.716 sum 14.431 -14.591 -10.237 22.934 Atomic orbital electron populations 1.70105 1.07926 1.27855 1.51904 1.25949 0.95687 1.03364 0.94827 0.85303 0.79232 0.78415 0.77478 1.18098 1.20658 1.20805 1.21490 0.93872 0.90615 1.49812 0.91104 1.19384 0.90091 0.88943 0.93404 1.62010 1.27022 1.02558 1.34636 1.22353 0.95576 0.99985 0.89852 1.21856 0.94791 0.81196 1.01801 1.47404 1.49730 1.07560 1.31704 1.15882 0.79243 0.83464 0.80381 1.90843 1.59348 1.29440 1.71738 1.44445 1.54071 1.13349 1.24052 1.21379 1.02933 0.88892 0.88288 0.86588 1.23468 0.96936 1.04132 0.94620 1.23030 0.88898 1.01392 1.03076 1.22515 0.94811 0.95181 1.01191 1.22710 0.98567 0.95432 0.99873 1.22482 0.93371 0.97321 1.00880 1.21492 0.90703 0.98159 0.87379 1.22465 0.95623 0.90039 1.00468 0.92757 1.02380 0.97694 0.96859 0.89343 0.89460 0.87898 0.75454 0.86826 0.87841 0.89796 0.90530 0.89376 0.90415 0.90701 0.89776 0.90025 0.89323 0.89834 0.96811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.79 13.29 21.45 0.28 -55.50 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.97 42.84 29.54 68.60 2.03 44.87 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.52 -28.29 8.41 25.60 0.22 -28.08 16 8 H 0.07 3.69 7.13 -2.91 -0.02 3.67 16 9 C 0.21 10.87 4.72 85.56 0.40 11.28 16 10 N -0.54 -22.40 4.62 -899.81 -4.16 -26.56 16 11 C 0.05 1.82 5.46 86.38 0.47 2.29 16 12 C 0.13 3.32 6.59 86.35 0.57 3.89 16 13 N -0.63 -18.70 3.01 -835.96 -2.52 -21.22 16 14 C 0.71 21.84 8.31 179.05 1.49 23.32 16 15 O -0.63 -23.96 15.39 -3.97 -0.06 -24.02 16 16 N -0.70 -16.37 5.46 -458.47 -2.51 -18.87 16 17 C 0.09 1.92 6.44 44.86 0.29 2.21 16 18 H 0.12 2.93 7.39 -2.38 -0.02 2.92 16 19 C -0.15 -2.42 10.46 30.50 0.32 -2.10 16 20 C -0.16 -2.47 3.02 -52.33 -0.16 -2.62 16 21 C -0.10 -1.26 8.10 30.98 0.25 -1.01 16 22 C -0.13 -1.35 8.08 31.19 0.25 -1.10 16 23 C -0.10 -1.31 8.08 30.98 0.25 -1.06 16 24 C 0.15 4.58 6.58 86.35 0.57 5.15 16 25 C 0.04 1.58 5.62 86.38 0.49 2.07 16 26 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 27 H -0.04 -2.39 8.12 -2.39 -0.02 -2.41 16 28 H 0.00 0.28 7.97 -2.39 -0.02 0.26 16 29 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.09 3.29 6.67 -2.39 -0.02 3.27 16 31 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 32 H 0.10 1.98 5.63 -2.39 -0.01 1.97 16 33 H 0.41 7.59 6.32 -92.71 -0.59 7.00 16 34 H 0.11 1.55 8.14 -2.39 -0.02 1.54 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.08 2.40 8.14 -2.39 -0.02 2.39 16 43 H 0.09 2.82 7.10 -2.39 -0.02 2.80 16 44 H 0.08 2.99 7.99 -2.39 -0.02 2.97 16 45 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 Total: -1.00 -68.53 358.28 -0.67 -69.20 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.39 Total: 17.42 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 5.87 Total: 14.68 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -8.89 Total: -122.15 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.06 Total: -24.02 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -68.53 -0.67 -69.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873268148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.946 kcal (2) G-P(sol) polarization free energy of solvation -68.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds