Wall clock time and date at job start Tue Mar 31 2020 06:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.47256 * 2 1 4 4 C 1.35990 * 117.00362 * 179.97438 * 3 2 1 5 5 C 1.38519 * 120.03238 * 0.02562 * 4 3 2 6 6 C 1.38825 * 119.92902 * 179.97438 * 5 4 3 7 7 N 1.39919 * 120.00309 * 179.97438 * 6 5 4 8 8 C 1.46496 * 120.00316 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47484 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47153 * 55.00066 * 9 8 7 11 11 C 1.53002 * 109.46817 * 295.00296 * 9 8 7 12 12 C 1.53000 * 109.47060 * 175.00385 * 9 8 7 13 13 C 1.50703 * 109.46801 * 184.99876 * 12 9 8 14 14 H 1.07998 * 120.00413 * 0.02562 * 13 12 9 15 15 C 1.37878 * 119.99680 * 179.97438 * 13 12 9 16 16 N 1.31523 * 119.99583 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00273 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47042 * 89.99722 * 17 15 13 19 19 H 1.48506 * 109.47062 * 209.99913 * 17 15 13 20 20 H 1.48495 * 109.46994 * 329.99733 * 17 15 13 21 21 C 1.38862 * 119.99559 * 0.26988 * 6 5 4 22 22 C 1.38215 * 120.06932 * 359.47389 * 21 6 5 23 23 C 1.38537 * 120.07076 * 0.50489 * 22 21 6 24 24 O 1.36094 * 119.99633 * 179.74684 * 23 22 21 25 25 C 1.42899 * 116.99931 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.46778 * 299.99619 * 1 2 3 27 27 H 1.08992 * 109.47368 * 59.99843 * 1 2 3 28 28 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47165 * 240.00165 * 2 1 3 30 30 H 1.09000 * 109.47041 * 120.00322 * 2 1 3 31 31 H 1.08003 * 120.03366 * 359.97438 * 5 4 3 32 32 H 0.97005 * 120.00100 * 0.02562 * 7 6 5 33 33 H 1.09000 * 109.46667 * 60.00040 * 8 7 6 34 34 H 1.09008 * 109.47241 * 300.00397 * 8 7 6 35 35 H 1.09002 * 109.47075 * 299.99262 * 11 9 8 36 36 H 1.08996 * 109.47407 * 60.00219 * 11 9 8 37 37 H 1.09000 * 109.46986 * 179.97438 * 11 9 8 38 38 H 1.09002 * 109.47069 * 304.99600 * 12 9 8 39 39 H 1.08991 * 109.47625 * 64.99919 * 12 9 8 40 40 H 0.97001 * 119.99531 * 179.97438 * 16 15 13 41 41 H 1.08001 * 119.96348 * 179.70345 * 21 6 5 42 42 H 1.07996 * 119.96006 * 180.25374 * 22 21 6 43 43 H 1.08998 * 109.46921 * 60.00414 * 25 24 23 44 44 H 1.09000 * 109.46880 * 180.02562 * 25 24 23 45 45 H 1.08997 * 109.47339 * 300.00030 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.1990 0.4275 0.0005 6 6 5.5750 0.6119 0.0005 7 7 6.4294 -0.4961 0.0011 8 6 7.8814 -0.3015 0.0005 9 6 8.5786 -1.6634 0.0006 10 1 8.2192 -2.2556 -0.8409 11 6 8.2687 -2.3948 1.3083 12 6 10.0901 -1.4625 -0.1256 13 6 10.7664 -2.8036 -0.2490 14 1 10.1771 -3.7086 -0.2388 15 6 12.1374 -2.8752 -0.3758 16 7 12.7276 -4.0455 -0.4840 17 14 13.1567 -1.3099 -0.3941 18 1 13.5523 -0.9605 0.9940 19 1 14.3744 -1.5216 -1.2174 20 1 12.3539 -0.2031 -0.9734 21 6 6.1033 1.8961 0.0062 22 6 5.2606 2.9916 0.0009 23 6 3.8870 2.8109 0.0004 24 8 3.0587 3.8907 0.0004 25 6 3.6741 5.1804 0.0003 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.7874 -0.5711 0.0005 32 1 6.0603 -1.3932 0.0010 33 1 8.1734 0.2567 0.8901 34 1 8.1730 0.2555 -0.8900 35 1 8.6281 -1.8026 2.1498 36 1 7.1919 -2.5379 1.3982 37 1 8.7650 -3.3653 1.3082 38 1 10.3044 -0.8646 -1.0114 39 1 10.4634 -0.9475 0.7594 40 1 13.6922 -4.0958 -0.5737 41 1 7.1738 2.0389 0.0111 42 1 5.6734 3.9896 0.0012 43 1 4.2941 5.2869 -0.8898 44 1 2.9030 5.9508 0.0007 45 1 4.2943 5.2871 0.8902 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876822353.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:57 Heat of formation + Delta-G solvation = -64.059351 kcal Electronic energy + Delta-G solvation = -23068.621765 eV Core-core repulsion = 19665.376504 eV Total energy + Delta-G solvation = -3403.245261 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52267 -38.49949 -38.06319 -36.09893 -33.62291 -32.15194 -31.81749 -30.05716 -28.87107 -27.60045 -26.75651 -25.66032 -24.07434 -22.77856 -21.58422 -21.20690 -19.36538 -18.55800 -17.39112 -17.06819 -16.45762 -16.32553 -15.77907 -15.49539 -14.90739 -14.73838 -14.45527 -14.29405 -14.04298 -13.48348 -13.23471 -12.97626 -12.81609 -12.73716 -12.47550 -12.36584 -12.10528 -12.02203 -11.79955 -11.33489 -11.31400 -11.12923 -11.05633 -10.93329 -10.78213 -10.55488 -9.99545 -9.81332 -9.65857 -9.34293 -9.16485 -8.57910 -8.39418 -6.96423 -6.08239 -4.06283 1.35171 1.69811 3.10371 3.27530 3.34021 3.35587 3.38076 3.66024 3.84462 4.41351 4.71604 4.73180 4.85445 4.97140 5.03256 5.08335 5.11296 5.24855 5.28084 5.32679 5.36887 5.45556 5.48663 5.54076 5.57182 5.58201 5.74272 5.80430 5.87882 6.07322 6.23720 6.27493 6.33403 6.40301 6.56202 6.67090 6.79385 6.96341 7.07414 7.16731 7.32843 7.42919 7.64389 7.74381 7.91374 8.48902 8.96040 9.53982 11.04978 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021521 B = 0.002917 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.761378 B = 9597.929548 C =10744.964103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.306 6.306 4 C 0.150 3.850 5 C -0.257 4.257 6 C 0.232 3.768 7 N -0.739 5.739 8 C 0.124 3.876 9 C -0.087 4.087 10 H 0.068 0.932 11 C -0.134 4.134 12 C -0.006 4.006 13 C -0.517 4.517 14 H 0.074 0.926 15 C 0.066 3.934 16 N -0.903 5.903 17 Si 0.878 3.122 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 C -0.199 4.199 22 C -0.119 4.119 23 C 0.028 3.972 24 O -0.314 6.314 25 C 0.030 3.970 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.131 0.869 32 H 0.398 0.602 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.032 0.968 37 H 0.068 0.932 38 H 0.017 0.983 39 H 0.014 0.986 40 H 0.263 0.737 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.050 0.950 44 H 0.093 0.907 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.159 13.504 1.552 25.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.220 6.220 4 C 0.103 3.897 5 C -0.281 4.281 6 C 0.127 3.873 7 N -0.367 5.367 8 C 0.001 3.999 9 C -0.106 4.106 10 H 0.086 0.914 11 C -0.191 4.191 12 C -0.044 4.044 13 C -0.554 4.554 14 H 0.092 0.908 15 C -0.135 4.135 16 N -0.542 5.542 17 Si 0.706 3.294 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.222 4.222 22 C -0.139 4.139 23 C -0.018 4.018 24 O -0.228 6.228 25 C -0.066 4.066 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.148 0.852 32 H 0.233 0.767 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.035 0.965 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.069 0.931 44 H 0.112 0.888 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.129 13.603 1.533 25.176 hybrid contribution 1.008 0.265 -0.018 1.042 sum -20.121 13.868 1.515 24.484 Atomic orbital electron populations 1.21756 0.92930 1.02637 1.03439 1.22761 0.95698 0.82373 1.01391 1.86149 1.18464 1.28615 1.88769 1.17836 0.82370 0.90715 0.98757 1.20383 0.92056 0.97718 1.17899 1.17526 0.88902 0.88037 0.92863 1.44943 1.05121 1.05618 1.81063 1.21640 0.78476 0.99290 1.00520 1.21242 0.97947 0.93101 0.98313 0.91359 1.21732 0.98625 1.01863 0.96870 1.19566 0.90277 0.98172 0.96388 1.21082 0.92091 0.92166 1.50109 0.90837 1.25027 0.97986 0.95872 0.94632 1.69913 1.10036 1.23687 1.50587 0.86801 0.79899 0.84388 0.78332 1.20316 1.21418 1.19005 1.20402 0.99923 0.90292 1.11565 1.20777 0.90905 0.99472 1.02705 1.17897 0.88779 0.85079 1.10083 1.86124 1.33601 1.12653 1.90435 1.22942 0.99487 0.83270 1.00865 0.91603 0.91601 0.90519 0.92108 0.92119 0.85167 0.76694 0.92593 0.92572 0.93508 0.94864 0.91255 0.96462 0.96794 0.92728 0.85536 0.85144 0.93148 0.88814 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.05 0.50 5.46 37.16 0.20 0.70 16 3 O -0.31 -4.03 9.92 -34.32 -0.34 -4.37 16 4 C 0.15 2.07 6.70 -39.15 -0.26 1.80 16 5 C -0.26 -3.32 8.88 -39.26 -0.35 -3.67 16 6 C 0.23 3.19 6.65 -83.72 -0.56 2.64 16 7 N -0.74 -10.14 5.47 -58.60 -0.32 -10.46 16 8 C 0.12 1.91 4.30 -4.05 -0.02 1.90 16 9 C -0.09 -1.59 2.37 -90.62 -0.22 -1.80 16 10 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 11 C -0.13 -2.31 8.88 37.16 0.33 -1.98 16 12 C -0.01 -0.14 3.52 -27.88 -0.10 -0.24 16 13 C -0.52 -14.09 8.96 -34.44 -0.31 -14.40 16 14 H 0.07 2.15 7.30 -52.49 -0.38 1.77 16 15 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 16 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 17 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 21 C -0.20 -2.66 9.31 -39.36 -0.37 -3.03 16 22 C -0.12 -1.48 9.03 -39.48 -0.36 -1.84 16 23 C 0.03 0.38 6.70 -39.14 -0.26 0.12 16 24 O -0.31 -4.12 10.28 -34.65 -0.36 -4.48 16 25 C 0.03 0.26 9.81 101.05 0.99 1.25 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 30 H 0.06 0.52 7.66 -51.93 -0.40 0.13 16 31 H 0.13 1.43 6.30 -52.48 -0.33 1.10 16 32 H 0.40 5.04 7.67 -40.82 -0.31 4.72 16 33 H 0.06 0.85 7.94 -51.93 -0.41 0.44 16 34 H 0.06 0.87 7.96 -51.92 -0.41 0.46 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.03 0.48 7.18 -51.93 -0.37 0.11 16 37 H 0.07 1.36 6.95 -51.93 -0.36 1.00 16 38 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 39 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 41 H 0.13 1.62 6.72 -52.49 -0.35 1.27 16 42 H 0.13 1.29 6.29 -52.49 -0.33 0.96 16 43 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 LS Contribution 361.05 15.07 5.44 5.44 Total: -1.00 -31.48 361.05 -7.78 -39.26 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.33 Total: 2.09 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -0.98 Total: -17.49 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.45 Total: -37.07 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.70 Total: -8.84 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.48 -7.78 -39.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876822353.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.794 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds