Wall clock time and date at job start Tue Mar 31 2020 06:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47244 * 2 1 4 4 C 1.36095 * 117.00246 * 179.97438 * 3 2 1 5 5 C 1.38539 * 119.99792 * 0.02562 * 4 3 2 6 6 C 1.38207 * 120.07264 * 179.74759 * 5 4 3 7 7 C 1.38871 * 120.06578 * 0.50812 * 6 5 4 8 8 N 1.39929 * 119.99677 * 179.74227 * 7 6 5 9 9 C 1.46494 * 119.99953 * 359.73054 * 8 7 6 10 10 C 1.53005 * 109.46777 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.47448 * 304.99480 * 10 9 8 12 12 C 1.53001 * 109.47080 * 65.00298 * 10 9 8 13 13 C 1.53002 * 109.46893 * 184.99600 * 10 9 8 14 14 C 1.50706 * 109.47153 * 174.99718 * 13 10 9 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 C 1.38821 * 119.99706 * 359.47031 * 7 6 5 23 23 C 1.38518 * 119.93239 * 0.27403 * 22 7 6 24 24 O 1.35982 * 120.03700 * 179.97438 * 23 22 7 25 25 C 1.42910 * 116.99932 * 0.02562 * 24 23 22 26 26 H 1.08996 * 109.47386 * 300.00231 * 1 2 3 27 27 H 1.08998 * 109.46507 * 60.00332 * 1 2 3 28 28 H 1.08997 * 109.47097 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47453 * 239.99331 * 2 1 3 30 30 H 1.09008 * 109.46912 * 119.99274 * 2 1 3 31 31 H 1.07998 * 119.96605 * 0.02562 * 5 4 3 32 32 H 1.08001 * 119.96706 * 180.27801 * 6 5 4 33 33 H 0.96998 * 119.99224 * 179.72403 * 8 7 6 34 34 H 1.08997 * 109.47647 * 59.99994 * 9 8 7 35 35 H 1.09001 * 109.47420 * 299.99513 * 9 8 7 36 36 H 1.09001 * 109.46866 * 299.99538 * 12 10 9 37 37 H 1.09000 * 109.47309 * 59.99633 * 12 10 9 38 38 H 1.09000 * 109.46932 * 180.02562 * 12 10 9 39 39 H 1.09004 * 109.47178 * 55.00508 * 13 10 9 40 40 H 1.08993 * 109.47411 * 295.00191 * 13 10 9 41 41 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 42 42 H 1.08005 * 120.03496 * 180.24924 * 22 7 6 43 43 H 1.08999 * 109.46878 * 299.99476 * 25 24 23 44 44 H 1.08998 * 109.46737 * 59.99868 * 25 24 23 45 45 H 1.09000 * 109.46938 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3555 1.5256 0.0005 5 6 4.1995 0.4269 0.0005 6 6 5.5698 0.6062 -0.0042 7 6 6.1038 1.8882 0.0017 8 7 7.4915 2.0680 0.0024 9 6 8.3809 0.9040 0.0028 10 6 9.8367 1.3747 0.0029 11 1 10.0013 2.0470 -0.8391 12 6 10.1343 2.1119 1.3101 13 6 10.7641 0.1642 -0.1223 14 6 12.1905 0.6347 -0.2459 15 1 12.4132 1.6914 -0.2357 16 6 13.2109 -0.2838 -0.3720 17 7 12.9401 -1.5707 -0.3790 18 14 14.9790 0.2994 -0.5244 19 1 15.8797 -0.8756 -0.6400 20 1 15.1172 1.1499 -1.7339 21 1 15.3457 1.0876 0.6795 22 6 5.2608 2.9911 0.0013 23 6 3.8873 2.8113 0.0007 24 8 3.0596 3.8902 0.0008 25 6 3.6750 5.1800 0.0009 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.7861 -0.5708 -0.0003 32 1 6.2261 -0.2515 -0.0087 33 1 7.8643 2.9635 0.0025 34 1 8.1937 0.3033 -0.8872 35 1 8.1929 0.3033 0.8927 36 1 9.4737 2.9743 1.3993 37 1 9.9698 1.4395 2.1520 38 1 11.1714 2.4476 1.3099 39 1 10.4933 -0.4109 -1.0079 40 1 10.6639 -0.4634 0.7631 41 1 12.0221 -1.8737 -0.2996 42 1 5.6754 3.9884 0.0018 43 1 4.2951 5.2866 0.8910 44 1 4.2952 5.2867 -0.8890 45 1 2.9039 5.9505 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876836767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:02 Heat of formation + Delta-G solvation = -71.454474 kcal Electronic energy + Delta-G solvation = -23006.448522 eV Core-core repulsion = 19602.882584 eV Total energy + Delta-G solvation = -3403.565938 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51150 -38.50285 -38.04702 -36.11955 -33.81358 -32.22356 -31.53186 -30.24764 -28.65449 -27.04195 -26.53920 -25.58445 -24.00523 -22.99696 -21.61100 -21.31620 -19.55867 -18.58563 -17.43364 -16.91453 -16.57652 -16.27076 -15.65035 -15.56254 -14.81817 -14.77137 -14.48503 -14.21763 -13.79674 -13.44397 -13.38900 -13.06064 -12.90301 -12.71269 -12.48032 -12.17287 -11.97293 -11.80051 -11.69522 -11.47111 -11.22770 -11.16130 -10.96391 -10.91438 -10.74379 -10.40602 -10.14030 -10.03096 -9.65050 -9.32517 -8.57147 -8.39942 -8.36131 -6.95247 -6.38658 -4.07947 1.35713 1.70620 3.20934 3.24078 3.41373 3.42898 3.61592 3.66431 3.85223 4.51937 4.72717 4.76792 4.88889 4.97136 5.04489 5.06968 5.10835 5.28103 5.32209 5.36411 5.37622 5.44328 5.50348 5.55735 5.60568 5.60905 5.75868 5.81979 5.88332 6.08060 6.22636 6.28515 6.34224 6.41648 6.57254 6.70183 6.83385 6.92094 7.06952 7.29451 7.42197 7.46854 7.65799 7.91693 8.16951 8.42476 8.85229 9.63588 11.01809 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025897 B = 0.002637 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.954828 B =10614.611327 C =11538.513584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.312 6.312 4 C 0.032 3.968 5 C -0.120 4.120 6 C -0.197 4.197 7 C 0.231 3.769 8 N -0.739 5.739 9 C 0.126 3.874 10 C -0.089 4.089 11 H 0.063 0.937 12 C -0.131 4.131 13 C 0.017 3.983 14 C -0.597 4.597 15 H 0.050 0.950 16 C 0.014 3.986 17 N -0.913 5.913 18 Si 1.067 2.933 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.288 1.288 22 C -0.256 4.256 23 C 0.145 3.855 24 O -0.308 6.308 25 C 0.027 3.973 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.397 0.603 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.031 0.969 37 H 0.046 0.954 38 H 0.065 0.935 39 H 0.008 0.992 40 H 0.010 0.990 41 H 0.268 0.732 42 H 0.131 0.869 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.765 7.873 1.344 23.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.227 6.227 4 C -0.014 4.014 5 C -0.139 4.139 6 C -0.220 4.220 7 C 0.125 3.875 8 N -0.368 5.368 9 C 0.003 3.997 10 C -0.108 4.108 11 H 0.082 0.918 12 C -0.189 4.189 13 C -0.021 4.021 14 C -0.635 4.635 15 H 0.068 0.932 16 C -0.190 4.190 17 N -0.549 5.549 18 Si 0.896 3.104 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.215 1.215 22 C -0.280 4.280 23 C 0.099 3.901 24 O -0.221 6.221 25 C -0.068 4.068 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.232 0.768 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.026 0.974 40 H 0.028 0.972 41 H 0.079 0.921 42 H 0.148 0.852 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.438 7.308 1.185 21.738 hybrid contribution -1.027 0.778 0.161 1.298 sum -21.465 8.086 1.346 22.977 Atomic orbital electron populations 1.21741 0.93153 1.02460 1.03354 1.22671 0.95562 0.82858 1.00951 1.86117 1.18335 1.27893 1.90362 1.17849 0.82876 0.90862 1.09828 1.20781 0.93255 0.97115 1.02773 1.20420 0.94505 0.95761 1.11315 1.17532 0.84117 0.92833 0.92981 1.44956 1.01630 1.09092 1.81115 1.21621 0.90070 0.87551 1.00481 1.21295 0.91642 0.99988 0.97841 0.91850 1.21711 1.01536 0.98476 0.97128 1.19208 0.94567 0.92228 0.96070 1.21987 0.91915 0.94703 1.54931 0.93207 1.25828 1.05059 0.94139 0.93958 1.70786 1.22957 1.14651 1.46541 0.83563 0.75053 0.75356 0.76466 1.20779 1.21486 1.21477 1.20374 0.91022 0.98738 1.17853 1.17876 0.88156 0.85019 0.99037 1.86153 1.33967 1.13076 1.88883 1.23028 0.99653 0.82796 1.01312 0.91684 0.91684 0.90691 0.92496 0.92508 0.85150 0.85513 0.76813 0.92636 0.92651 0.94957 0.93535 0.91644 0.97378 0.97222 0.92114 0.85162 0.92775 0.92768 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.16 0.38 -0.73 16 2 C 0.06 0.53 5.46 37.16 0.20 0.73 16 3 O -0.31 -4.21 9.92 -34.65 -0.34 -4.56 16 4 C 0.03 0.45 6.70 -39.14 -0.26 0.19 16 5 C -0.12 -1.55 9.03 -39.48 -0.36 -1.91 16 6 C -0.20 -2.76 9.31 -39.36 -0.37 -3.13 16 7 C 0.23 3.30 6.65 -83.71 -0.56 2.75 16 8 N -0.74 -10.65 5.47 -58.60 -0.32 -10.97 16 9 C 0.13 2.08 4.30 -4.04 -0.02 2.06 16 10 C -0.09 -1.71 2.37 -90.62 -0.22 -1.92 16 11 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 12 C -0.13 -2.36 8.88 37.16 0.33 -2.03 16 13 C 0.02 0.41 3.76 -27.88 -0.10 0.30 16 14 C -0.60 -16.39 8.41 -34.44 -0.29 -16.68 16 15 H 0.05 1.34 7.06 -52.49 -0.37 0.97 16 16 C 0.01 0.39 5.46 -17.82 -0.10 0.30 16 17 N -0.91 -27.63 13.65 55.43 0.76 -26.87 16 18 Si 1.07 24.95 29.90 -169.99 -5.08 19.87 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 22 C -0.26 -3.39 8.88 -39.26 -0.35 -3.74 16 23 C 0.15 2.05 6.70 -39.14 -0.26 1.79 16 24 O -0.31 -4.09 10.28 -34.30 -0.35 -4.44 16 25 C 0.03 0.24 9.81 101.05 0.99 1.23 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.49 7.66 -51.93 -0.40 0.10 16 30 H 0.06 0.49 7.66 -51.92 -0.40 0.09 16 31 H 0.13 1.37 6.29 -52.49 -0.33 1.04 16 32 H 0.13 1.73 6.72 -52.49 -0.35 1.38 16 33 H 0.40 5.25 7.67 -40.82 -0.31 4.93 16 34 H 0.06 0.93 7.94 -51.93 -0.41 0.52 16 35 H 0.06 0.92 7.96 -51.93 -0.41 0.50 16 36 H 0.03 0.48 7.18 -51.93 -0.37 0.11 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 39 H 0.01 0.21 8.01 -51.93 -0.42 -0.21 16 40 H 0.01 0.25 8.00 -51.93 -0.42 -0.17 16 41 H 0.27 8.06 7.22 -40.82 -0.29 7.77 16 42 H 0.13 1.45 6.30 -52.48 -0.33 1.12 16 43 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 44 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 363.33 15.07 5.48 5.48 Total: -1.00 -31.73 363.33 -8.14 -39.87 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.31 Total: 2.41 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -0.97 Total: -20.80 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.44 Total: -37.84 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.70 Total: -8.99 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.73 -8.14 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876836767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.584 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds