Wall clock time and date at job start Tue Mar 31 2020 06:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47244 * 2 1 4 4 C 1.36095 * 117.00246 * 179.97438 * 3 2 1 5 5 C 1.38539 * 119.99792 * 0.02562 * 4 3 2 6 6 C 1.38207 * 120.07264 * 179.74759 * 5 4 3 7 7 C 1.38871 * 120.06578 * 0.50812 * 6 5 4 8 8 N 1.39929 * 119.99677 * 179.74227 * 7 6 5 9 9 C 1.46494 * 119.99953 * 359.73054 * 8 7 6 10 10 C 1.53005 * 109.46777 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.47448 * 304.99480 * 10 9 8 12 12 C 1.53001 * 109.47080 * 65.00298 * 10 9 8 13 13 C 1.53002 * 109.46893 * 184.99600 * 10 9 8 14 14 C 1.50706 * 109.47153 * 174.99718 * 13 10 9 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 C 1.38821 * 119.99706 * 359.47031 * 7 6 5 23 23 C 1.38518 * 119.93239 * 0.27403 * 22 7 6 24 24 O 1.35982 * 120.03700 * 179.97438 * 23 22 7 25 25 C 1.42910 * 116.99932 * 0.02562 * 24 23 22 26 26 H 1.08996 * 109.47386 * 300.00231 * 1 2 3 27 27 H 1.08998 * 109.46507 * 60.00332 * 1 2 3 28 28 H 1.08997 * 109.47097 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47453 * 239.99331 * 2 1 3 30 30 H 1.09008 * 109.46912 * 119.99274 * 2 1 3 31 31 H 1.07998 * 119.96605 * 0.02562 * 5 4 3 32 32 H 1.08001 * 119.96706 * 180.27801 * 6 5 4 33 33 H 0.96998 * 119.99224 * 179.72403 * 8 7 6 34 34 H 1.08997 * 109.47647 * 59.99994 * 9 8 7 35 35 H 1.09001 * 109.47420 * 299.99513 * 9 8 7 36 36 H 1.09001 * 109.46866 * 299.99538 * 12 10 9 37 37 H 1.09000 * 109.47309 * 59.99633 * 12 10 9 38 38 H 1.09000 * 109.46932 * 180.02562 * 12 10 9 39 39 H 1.09004 * 109.47178 * 55.00508 * 13 10 9 40 40 H 1.08993 * 109.47411 * 295.00191 * 13 10 9 41 41 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 42 42 H 1.08005 * 120.03496 * 180.24924 * 22 7 6 43 43 H 1.08999 * 109.46878 * 299.99476 * 25 24 23 44 44 H 1.08998 * 109.46737 * 59.99868 * 25 24 23 45 45 H 1.09000 * 109.46938 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3555 1.5256 0.0005 5 6 4.1995 0.4269 0.0005 6 6 5.5698 0.6062 -0.0042 7 6 6.1038 1.8882 0.0017 8 7 7.4915 2.0680 0.0024 9 6 8.3809 0.9040 0.0028 10 6 9.8367 1.3747 0.0029 11 1 10.0013 2.0470 -0.8391 12 6 10.1343 2.1119 1.3101 13 6 10.7641 0.1642 -0.1223 14 6 12.1905 0.6347 -0.2459 15 1 12.4132 1.6914 -0.2357 16 6 13.2109 -0.2838 -0.3720 17 7 12.9401 -1.5707 -0.3790 18 14 14.9790 0.2994 -0.5244 19 1 15.8797 -0.8756 -0.6400 20 1 15.1172 1.1499 -1.7339 21 1 15.3457 1.0876 0.6795 22 6 5.2608 2.9911 0.0013 23 6 3.8873 2.8113 0.0007 24 8 3.0596 3.8902 0.0008 25 6 3.6750 5.1800 0.0009 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.7861 -0.5708 -0.0003 32 1 6.2261 -0.2515 -0.0087 33 1 7.8643 2.9635 0.0025 34 1 8.1937 0.3033 -0.8872 35 1 8.1929 0.3033 0.8927 36 1 9.4737 2.9743 1.3993 37 1 9.9698 1.4395 2.1520 38 1 11.1714 2.4476 1.3099 39 1 10.4933 -0.4109 -1.0079 40 1 10.6639 -0.4634 0.7631 41 1 12.0221 -1.8737 -0.2996 42 1 5.6754 3.9884 0.0018 43 1 4.2951 5.2866 0.8910 44 1 4.2952 5.2867 -0.8890 45 1 2.9039 5.9505 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876836767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:01 Heat of formation + Delta-G solvation = -89.733954 kcal Electronic energy + Delta-G solvation = -23007.241179 eV Core-core repulsion = 19602.882584 eV Total energy + Delta-G solvation = -3404.358595 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.49339 -39.42433 -39.20939 -37.52147 -35.40487 -33.79926 -32.40684 -31.27672 -29.69864 -28.48887 -27.80487 -26.97940 -24.91431 -24.75924 -22.61583 -22.40732 -21.07698 -19.57302 -18.90813 -18.38401 -17.74314 -17.13553 -16.74328 -16.37192 -16.19175 -15.84933 -15.67209 -15.64933 -15.21783 -15.06615 -14.58411 -14.08729 -13.91865 -13.66575 -13.58770 -13.47915 -13.19467 -13.03866 -12.96517 -12.73196 -12.56859 -12.32221 -12.20809 -12.01288 -11.95960 -11.81341 -11.73812 -11.60402 -11.42178 -10.61913 -10.52306 -10.40036 -9.41662 -8.64940 -8.03465 -6.34676 0.33934 0.64251 1.53065 1.60996 1.79705 2.29896 2.38388 2.53146 2.60040 2.80940 3.18892 3.81482 3.94672 4.06264 4.09713 4.10614 4.19008 4.23660 4.30516 4.33528 4.40482 4.40872 4.47865 4.56930 4.65500 4.71365 4.73787 4.78565 4.83394 4.92314 4.98031 5.02425 5.17876 5.21868 5.28210 5.29745 5.38797 5.39823 5.56327 5.59720 6.02416 6.18251 6.22182 6.28810 6.61838 6.69096 6.85641 7.45959 8.76065 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025897 B = 0.002637 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.954828 B =10614.611327 C =11538.513584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 O -0.331 6.331 4 C 0.020 3.980 5 C -0.119 4.119 6 C -0.210 4.210 7 C 0.217 3.783 8 N -0.735 5.735 9 C 0.143 3.857 10 C -0.078 4.078 11 H 0.062 0.938 12 C -0.124 4.124 13 C 0.017 3.983 14 C -0.605 4.605 15 H 0.054 0.946 16 C -0.042 4.042 17 N -0.942 5.942 18 Si 1.114 2.886 19 H -0.287 1.287 20 H -0.270 1.270 21 H -0.269 1.269 22 C -0.251 4.251 23 C 0.133 3.867 24 O -0.326 6.326 25 C 0.019 3.981 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.151 0.849 32 H 0.125 0.875 33 H 0.404 0.596 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.040 0.960 38 H 0.047 0.953 39 H -0.013 1.013 40 H -0.009 1.009 41 H 0.255 0.745 42 H 0.151 0.849 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.433 9.429 1.499 24.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.030 4.030 3 O -0.246 6.246 4 C -0.026 4.026 5 C -0.138 4.138 6 C -0.233 4.233 7 C 0.112 3.888 8 N -0.366 5.366 9 C 0.018 3.982 10 C -0.097 4.097 11 H 0.081 0.919 12 C -0.182 4.182 13 C -0.020 4.020 14 C -0.643 4.643 15 H 0.073 0.927 16 C -0.239 4.239 17 N -0.580 5.580 18 Si 0.936 3.064 19 H -0.213 1.213 20 H -0.195 1.195 21 H -0.194 1.194 22 C -0.274 4.274 23 C 0.086 3.914 24 O -0.240 6.240 25 C -0.076 4.076 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.169 0.831 32 H 0.143 0.857 33 H 0.240 0.760 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.006 0.994 40 H 0.009 0.991 41 H 0.065 0.935 42 H 0.168 0.832 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.148 8.894 1.342 22.982 hybrid contribution -0.959 0.313 0.110 1.015 sum -22.107 9.208 1.452 23.992 Atomic orbital electron populations 1.21769 0.91610 1.03954 1.02993 1.22977 0.96852 0.81448 1.01731 1.86104 1.18004 1.30206 1.90312 1.18142 0.83447 0.91368 1.09673 1.20969 0.92768 0.97998 1.02054 1.20557 0.95073 0.95844 1.11856 1.17651 0.83927 0.93344 0.93835 1.44687 1.01490 1.08597 1.81816 1.21237 0.88685 0.88106 1.00129 1.21081 0.92277 0.97692 0.98673 0.91946 1.21630 1.01210 0.99401 0.95934 1.19141 0.94841 0.93900 0.94148 1.22411 0.93356 0.94943 1.53586 0.92741 1.27350 1.09533 0.93791 0.93260 1.70917 1.22148 1.15903 1.49038 0.82964 0.70279 0.75247 0.77914 1.21252 1.19479 1.19413 1.20517 0.90647 0.99371 1.16883 1.18117 0.88599 0.85567 0.99101 1.86133 1.34853 1.14236 1.88787 1.23324 1.00777 0.81383 1.02091 0.92017 0.92051 0.88254 0.91697 0.91656 0.83125 0.85687 0.75951 0.93369 0.92857 0.91493 0.94037 0.93430 0.99430 0.99079 0.93525 0.83177 0.91896 0.91970 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.28 71.98 0.74 -1.21 16 2 C 0.04 0.80 5.46 71.98 0.39 1.19 16 3 O -0.33 -8.68 9.92 -80.66 -0.80 -9.48 16 4 C 0.02 0.55 6.70 22.56 0.15 0.70 16 5 C -0.12 -2.97 9.03 22.33 0.20 -2.77 16 6 C -0.21 -5.76 9.31 22.41 0.21 -5.55 16 7 C 0.22 5.94 6.65 38.14 0.25 6.19 16 8 N -0.74 -20.08 5.47 -339.31 -1.86 -21.94 16 9 C 0.14 4.62 4.30 86.38 0.37 5.00 16 10 C -0.08 -2.97 2.37 -10.79 -0.03 -3.00 16 11 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 12 C -0.12 -4.30 8.88 71.98 0.64 -3.66 16 13 C 0.02 0.86 3.76 29.85 0.11 0.97 16 14 C -0.60 -33.38 8.41 25.60 0.22 -33.17 16 15 H 0.05 2.90 7.06 -2.91 -0.02 2.88 16 16 C -0.04 -2.42 5.46 84.65 0.46 -1.96 16 17 N -0.94 -58.20 13.65 21.45 0.29 -57.91 16 18 Si 1.11 49.71 29.90 68.60 2.05 51.76 16 19 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 22 C -0.25 -6.25 8.88 22.48 0.20 -6.05 16 23 C 0.13 3.60 6.70 22.55 0.15 3.75 16 24 O -0.33 -8.27 10.28 -79.38 -0.82 -9.09 16 25 C 0.02 0.29 9.81 113.37 1.11 1.40 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 1.04 7.66 -2.39 -0.02 1.02 16 30 H 0.07 1.04 7.66 -2.38 -0.02 1.02 16 31 H 0.15 2.98 6.29 -2.91 -0.02 2.96 16 32 H 0.13 3.39 6.72 -2.91 -0.02 3.37 16 33 H 0.40 9.76 7.67 -92.71 -0.71 9.05 16 34 H 0.05 1.63 7.94 -2.39 -0.02 1.61 16 35 H 0.05 1.75 7.96 -2.39 -0.02 1.73 16 36 H 0.07 1.84 7.18 -2.39 -0.02 1.83 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.05 1.80 6.95 -2.39 -0.02 1.78 16 39 H -0.01 -0.67 8.01 -2.39 -0.02 -0.69 16 40 H -0.01 -0.49 8.00 -2.39 -0.02 -0.50 16 41 H 0.26 15.92 7.22 -92.71 -0.67 15.25 16 42 H 0.15 2.99 6.30 -2.91 -0.02 2.98 16 43 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 44 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 45 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -68.75 363.33 4.42 -64.32 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.36 Total: 20.49 kcal Atomic # 6 Polarization: -43.36 SS G_CDS: 5.19 Total: -38.17 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -1.56 Total: -79.84 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -1.62 Total: -18.56 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 2.05 Total: 51.76 kcal Total: -68.75 4.42 -64.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876836767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.410 kcal (2) G-P(sol) polarization free energy of solvation -68.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds