Wall clock time and date at job start Tue Mar 31 2020 06:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47207 * 2 1 4 4 C 1.35998 * 117.00162 * 179.97438 * 3 2 1 5 5 C 1.38727 * 119.98056 * 0.02562 * 4 3 2 6 6 C 1.38091 * 120.01846 * 179.74537 * 5 4 3 7 7 C 1.38880 * 119.97905 * 0.51405 * 6 5 4 8 8 N 1.39941 * 120.01605 * 179.74622 * 7 6 5 9 9 C 1.46496 * 120.00362 * 359.72024 * 8 7 6 10 10 C 1.52997 * 109.47484 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47153 * 55.00066 * 10 9 8 12 12 C 1.53002 * 109.46817 * 295.00296 * 10 9 8 13 13 C 1.53000 * 109.47060 * 175.00385 * 10 9 8 14 14 C 1.50703 * 109.46801 * 184.99876 * 13 10 9 15 15 H 1.07998 * 120.00413 * 0.02562 * 14 13 10 16 16 C 1.37878 * 119.99680 * 179.97438 * 14 13 10 17 17 N 1.31523 * 119.99583 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00273 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47042 * 89.99722 * 18 16 14 20 20 H 1.48506 * 109.47062 * 209.99913 * 18 16 14 21 21 H 1.48495 * 109.46994 * 329.99733 * 18 16 14 22 22 C 1.38837 * 119.96588 * 359.46588 * 7 6 5 23 23 C 1.38131 * 119.97808 * 0.27967 * 22 7 6 24 24 C 1.50700 * 119.99345 * 179.97438 * 23 22 7 25 25 O 1.42900 * 109.46836 * 0.02562 * 24 23 22 26 26 H 1.08993 * 109.47126 * 299.99955 * 1 2 3 27 27 H 1.08998 * 109.46681 * 60.00430 * 1 2 3 28 28 H 1.09001 * 109.46929 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47489 * 239.99363 * 2 1 3 30 30 H 1.09003 * 109.47123 * 119.99693 * 2 1 3 31 31 H 1.07995 * 119.98832 * 0.02562 * 5 4 3 32 32 H 1.08000 * 120.00881 * 180.25963 * 6 5 4 33 33 H 0.97005 * 120.00054 * 179.72804 * 8 7 6 34 34 H 1.09000 * 109.46667 * 60.00289 * 9 8 7 35 35 H 1.09008 * 109.47241 * 300.00646 * 9 8 7 36 36 H 1.08996 * 109.47407 * 60.00219 * 12 10 9 37 37 H 1.09000 * 109.46986 * 179.97438 * 12 10 9 38 38 H 1.09002 * 109.47075 * 299.99262 * 12 10 9 39 39 H 1.09002 * 109.47069 * 304.99600 * 13 10 9 40 40 H 1.08991 * 109.47625 * 64.99919 * 13 10 9 41 41 H 0.97001 * 119.99531 * 179.97438 * 17 16 14 42 42 H 1.07997 * 120.01257 * 180.25102 * 22 7 6 43 43 H 1.09006 * 109.47010 * 119.99660 * 24 23 22 44 44 H 1.08993 * 109.47282 * 239.99844 * 24 23 22 45 45 H 0.96704 * 113.99956 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.1993 0.4250 0.0005 6 6 5.5684 0.6051 -0.0042 7 6 6.0997 1.8882 0.0018 8 7 7.4870 2.0715 0.0023 9 6 8.3794 0.9098 0.0027 10 6 9.8341 1.3840 0.0039 11 1 9.9962 2.0569 0.8460 12 6 10.1309 2.1220 -1.3030 13 6 10.7643 0.1758 0.1300 14 6 12.1893 0.6499 0.2547 15 1 12.4095 1.7071 0.2454 16 6 13.2119 -0.2662 0.3817 17 7 14.4556 0.1476 0.4910 18 14 12.8311 -2.0949 0.3985 19 1 12.8663 -2.6206 -0.9899 20 1 13.8434 -2.8037 1.2220 21 1 11.4811 -2.3140 0.9767 22 6 5.2536 2.9890 0.0014 23 6 3.8843 2.8072 0.0008 24 6 2.9657 4.0018 0.0010 25 8 3.7434 5.2006 0.0011 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.7860 -0.5727 -0.0003 32 1 6.2259 -0.2518 -0.0085 33 1 7.8578 2.9679 0.0025 34 1 8.1936 0.3087 -0.8873 35 1 8.1929 0.3086 0.8927 36 1 9.4683 2.9828 -1.3929 37 1 11.1671 2.4603 -1.3020 38 1 9.9689 1.4492 -2.1451 39 1 10.4941 -0.3999 1.0153 40 1 10.6664 -0.4521 -0.7555 41 1 15.1750 -0.4968 0.5807 42 1 5.6659 3.9872 0.0019 43 1 2.3372 3.9769 -0.8893 44 1 2.3366 3.9762 0.8906 45 1 3.2163 6.0114 0.0008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876847286.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:55 Heat of formation + Delta-G solvation = -80.050540 kcal Electronic energy + Delta-G solvation = -22942.739652 eV Core-core repulsion = 19538.800961 eV Total energy + Delta-G solvation = -3403.938691 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.29057 -38.26164 -37.17075 -36.12465 -33.79329 -32.25056 -31.67572 -31.29257 -28.76422 -27.32795 -25.97791 -25.48771 -24.08494 -22.54746 -21.58183 -20.52058 -19.31693 -18.18849 -17.57803 -16.89153 -16.55533 -16.27778 -15.65179 -15.02933 -14.88517 -14.62796 -14.33710 -14.18596 -13.87927 -13.42537 -13.29503 -13.12146 -12.84732 -12.78784 -12.52509 -12.29987 -11.96597 -11.83514 -11.73637 -11.59631 -11.10119 -11.08000 -10.78148 -10.72598 -10.50408 -10.45061 -9.95628 -9.78481 -9.61315 -9.31932 -9.12944 -8.70067 -8.55222 -6.93458 -6.05489 -4.03250 1.37515 1.70453 3.15827 3.29422 3.37209 3.40067 3.75064 3.87699 4.02244 4.43743 4.66406 4.69541 4.86413 4.93436 5.00945 5.15884 5.22952 5.27688 5.35917 5.36066 5.48098 5.49403 5.49685 5.60377 5.68207 5.72349 5.82670 5.99149 6.10778 6.21825 6.32940 6.34044 6.42098 6.47105 6.67103 6.76444 6.84713 7.01163 7.20557 7.34720 7.38127 7.46112 7.61595 7.77853 8.01335 8.52156 8.99154 9.56780 11.07749 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021846 B = 0.002842 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.382986 B = 9849.037544 C =10981.111585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.323 6.323 4 C 0.062 3.938 5 C -0.155 4.155 6 C -0.164 4.164 7 C 0.193 3.807 8 N -0.742 5.742 9 C 0.126 3.874 10 C -0.087 4.087 11 H 0.068 0.932 12 C -0.134 4.134 13 C -0.006 4.006 14 C -0.515 4.515 15 H 0.074 0.926 16 C 0.065 3.935 17 N -0.903 5.903 18 Si 0.879 3.121 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.141 4.141 23 C -0.076 4.076 24 C 0.130 3.870 25 O -0.570 6.570 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.399 0.601 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.034 0.966 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.017 0.983 40 H 0.013 0.987 41 H 0.263 0.737 42 H 0.135 0.865 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.044 3.277 -1.568 28.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.238 6.238 4 C 0.016 3.984 5 C -0.174 4.174 6 C -0.187 4.187 7 C 0.089 3.911 8 N -0.372 5.372 9 C 0.002 3.998 10 C -0.106 4.106 11 H 0.087 0.913 12 C -0.191 4.191 13 C -0.044 4.044 14 C -0.553 4.553 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.543 5.543 18 Si 0.706 3.294 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.164 4.164 23 C -0.078 4.078 24 C 0.053 3.947 25 O -0.375 6.375 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.234 0.766 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.035 0.965 40 H 0.032 0.968 41 H 0.072 0.928 42 H 0.153 0.847 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -27.399 2.726 -1.548 27.578 hybrid contribution -0.208 -0.690 0.016 0.721 sum -27.607 2.036 -1.532 27.724 Atomic orbital electron populations 1.21760 0.93128 1.02637 1.03272 1.22667 0.95436 0.82600 1.01186 1.85983 1.19191 1.28526 1.90057 1.18286 0.82003 0.92960 1.05107 1.20865 0.93546 0.97402 1.05589 1.20500 0.94543 0.95821 1.07792 1.17851 0.84478 0.93284 0.95463 1.44899 1.01550 1.09017 1.81703 1.21597 0.90181 0.87804 1.00241 1.21234 0.91387 0.99614 0.98344 0.91343 1.21730 1.01941 0.98597 0.96830 1.19569 0.95374 0.93144 0.96334 1.21091 0.88997 0.95285 1.49963 0.90811 1.25030 0.94986 0.98861 0.94682 1.69916 0.99181 1.34484 1.50669 0.86799 0.78419 0.85880 0.78301 1.20338 1.21441 1.19033 1.20236 0.91323 0.98108 1.06696 1.18648 0.93561 0.90889 1.04659 1.20628 0.91275 0.82608 1.00208 1.86463 1.37488 1.15763 1.97790 0.91683 0.91695 0.90613 0.92364 0.92356 0.85787 0.85739 0.76603 0.92837 0.92811 0.94745 0.91287 0.93574 0.96502 0.96834 0.92760 0.84690 0.92461 0.92445 0.77337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.16 0.38 -0.52 16 2 C 0.06 0.46 5.46 37.16 0.20 0.67 16 3 O -0.32 -3.63 9.56 -19.73 -0.19 -3.82 16 4 C 0.06 0.79 6.66 -39.24 -0.26 0.53 16 5 C -0.15 -1.93 9.03 -39.45 -0.36 -2.28 16 6 C -0.16 -2.26 9.31 -39.40 -0.37 -2.63 16 7 C 0.19 2.81 6.66 -83.70 -0.56 2.25 16 8 N -0.74 -10.89 5.47 -58.59 -0.32 -11.21 16 9 C 0.13 2.02 4.30 -4.05 -0.02 2.01 16 10 C -0.09 -1.64 2.37 -90.62 -0.22 -1.85 16 11 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 12 C -0.13 -2.41 8.88 37.16 0.33 -2.08 16 13 C -0.01 -0.15 3.52 -27.88 -0.10 -0.24 16 14 C -0.52 -14.28 8.96 -34.44 -0.31 -14.59 16 15 H 0.07 2.19 7.30 -52.49 -0.38 1.81 16 16 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 17 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 18 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 22 C -0.14 -1.97 9.22 -39.40 -0.36 -2.33 16 23 C -0.08 -1.00 5.89 -104.50 -0.62 -1.61 16 24 C 0.13 1.36 6.90 36.01 0.25 1.60 16 25 O -0.57 -5.69 12.14 -35.23 -0.43 -6.11 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 30 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 31 H 0.12 1.26 6.29 -52.49 -0.33 0.93 16 32 H 0.12 1.66 6.73 -52.49 -0.35 1.30 16 33 H 0.40 5.54 7.67 -40.82 -0.31 5.22 16 34 H 0.05 0.85 7.94 -51.93 -0.41 0.44 16 35 H 0.05 0.87 7.96 -51.92 -0.41 0.46 16 36 H 0.03 0.53 7.18 -51.93 -0.37 0.15 16 37 H 0.07 1.39 6.95 -51.93 -0.36 1.03 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 40 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.14 1.85 7.00 -52.49 -0.37 1.48 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.38 1.86 9.12 45.56 0.42 2.27 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -32.03 361.79 -8.05 -40.08 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.58 Total: 4.93 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -2.09 Total: -19.30 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.45 Total: -38.09 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.62 Total: -9.93 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.03 -8.05 -40.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876847286.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.971 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds