Wall clock time and date at job start Tue Mar 31 2020 06:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47207 * 2 1 4 4 C 1.35998 * 117.00162 * 179.97438 * 3 2 1 5 5 C 1.38727 * 119.98056 * 0.02562 * 4 3 2 6 6 C 1.38091 * 120.01846 * 179.74537 * 5 4 3 7 7 C 1.38880 * 119.97905 * 0.51405 * 6 5 4 8 8 N 1.39941 * 120.01605 * 179.74622 * 7 6 5 9 9 C 1.46496 * 120.00362 * 359.72024 * 8 7 6 10 10 C 1.52997 * 109.47484 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47153 * 55.00066 * 10 9 8 12 12 C 1.53002 * 109.46817 * 295.00296 * 10 9 8 13 13 C 1.53000 * 109.47060 * 175.00385 * 10 9 8 14 14 C 1.50703 * 109.46801 * 184.99876 * 13 10 9 15 15 H 1.07998 * 120.00413 * 0.02562 * 14 13 10 16 16 C 1.37878 * 119.99680 * 179.97438 * 14 13 10 17 17 N 1.31523 * 119.99583 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00273 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47042 * 89.99722 * 18 16 14 20 20 H 1.48506 * 109.47062 * 209.99913 * 18 16 14 21 21 H 1.48495 * 109.46994 * 329.99733 * 18 16 14 22 22 C 1.38837 * 119.96588 * 359.46588 * 7 6 5 23 23 C 1.38131 * 119.97808 * 0.27967 * 22 7 6 24 24 C 1.50700 * 119.99345 * 179.97438 * 23 22 7 25 25 O 1.42900 * 109.46836 * 0.02562 * 24 23 22 26 26 H 1.08993 * 109.47126 * 299.99955 * 1 2 3 27 27 H 1.08998 * 109.46681 * 60.00430 * 1 2 3 28 28 H 1.09001 * 109.46929 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47489 * 239.99363 * 2 1 3 30 30 H 1.09003 * 109.47123 * 119.99693 * 2 1 3 31 31 H 1.07995 * 119.98832 * 0.02562 * 5 4 3 32 32 H 1.08000 * 120.00881 * 180.25963 * 6 5 4 33 33 H 0.97005 * 120.00054 * 179.72804 * 8 7 6 34 34 H 1.09000 * 109.46667 * 60.00289 * 9 8 7 35 35 H 1.09008 * 109.47241 * 300.00646 * 9 8 7 36 36 H 1.08996 * 109.47407 * 60.00219 * 12 10 9 37 37 H 1.09000 * 109.46986 * 179.97438 * 12 10 9 38 38 H 1.09002 * 109.47075 * 299.99262 * 12 10 9 39 39 H 1.09002 * 109.47069 * 304.99600 * 13 10 9 40 40 H 1.08991 * 109.47625 * 64.99919 * 13 10 9 41 41 H 0.97001 * 119.99531 * 179.97438 * 17 16 14 42 42 H 1.07997 * 120.01257 * 180.25102 * 22 7 6 43 43 H 1.09006 * 109.47010 * 119.99660 * 24 23 22 44 44 H 1.08993 * 109.47282 * 239.99844 * 24 23 22 45 45 H 0.96704 * 113.99956 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.1993 0.4250 0.0005 6 6 5.5684 0.6051 -0.0042 7 6 6.0997 1.8882 0.0018 8 7 7.4870 2.0715 0.0023 9 6 8.3794 0.9098 0.0027 10 6 9.8341 1.3840 0.0039 11 1 9.9962 2.0569 0.8460 12 6 10.1309 2.1220 -1.3030 13 6 10.7643 0.1758 0.1300 14 6 12.1893 0.6499 0.2547 15 1 12.4095 1.7071 0.2454 16 6 13.2119 -0.2662 0.3817 17 7 14.4556 0.1476 0.4910 18 14 12.8311 -2.0949 0.3985 19 1 12.8663 -2.6206 -0.9899 20 1 13.8434 -2.8037 1.2220 21 1 11.4811 -2.3140 0.9767 22 6 5.2536 2.9890 0.0014 23 6 3.8843 2.8072 0.0008 24 6 2.9657 4.0018 0.0010 25 8 3.7434 5.2006 0.0011 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.7860 -0.5727 -0.0003 32 1 6.2259 -0.2518 -0.0085 33 1 7.8578 2.9679 0.0025 34 1 8.1936 0.3087 -0.8873 35 1 8.1929 0.3086 0.8927 36 1 9.4683 2.9828 -1.3929 37 1 11.1671 2.4603 -1.3020 38 1 9.9689 1.4492 -2.1451 39 1 10.4941 -0.3999 1.0153 40 1 10.6664 -0.4521 -0.7555 41 1 15.1750 -0.4968 0.5807 42 1 5.6659 3.9872 0.0019 43 1 2.3372 3.9769 -0.8893 44 1 2.3366 3.9762 0.8906 45 1 3.2163 6.0114 0.0008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876847286.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:55 Heat of formation + Delta-G solvation = -101.652137 kcal Electronic energy + Delta-G solvation = -22943.676368 eV Core-core repulsion = 19538.800961 eV Total energy + Delta-G solvation = -3404.875407 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20675 -39.26761 -38.12650 -37.29345 -35.24695 -33.96433 -32.62839 -32.09203 -30.12883 -28.90430 -26.99307 -26.73068 -24.78245 -24.31022 -22.44121 -21.61078 -20.82933 -19.09886 -18.94318 -18.35006 -17.65517 -16.99836 -16.78372 -16.26890 -15.98754 -15.73389 -15.72481 -15.34860 -14.93679 -14.79559 -14.50473 -14.18886 -14.09547 -13.86426 -13.59870 -13.45944 -13.22228 -13.01521 -12.85636 -12.57536 -12.52405 -12.47033 -12.21492 -11.79510 -11.72675 -11.57759 -11.51575 -11.32615 -11.19602 -11.11064 -10.73957 -10.34670 -9.66437 -8.26171 -7.98262 -6.28924 0.38513 0.70632 1.37100 1.38834 1.50257 2.37962 2.38316 2.61581 2.87839 3.09293 3.32430 3.87741 4.00901 4.05324 4.12643 4.15486 4.21102 4.31257 4.38463 4.43150 4.45226 4.52785 4.60706 4.66954 4.75183 4.78714 4.85491 4.91096 5.00312 5.03734 5.04247 5.22388 5.25273 5.33484 5.35622 5.41089 5.47450 5.49186 5.64434 5.69341 5.76941 6.30761 6.41267 6.61236 6.78658 6.90944 6.95748 7.34669 8.90395 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021846 B = 0.002842 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.382986 B = 9849.037544 C =10981.111585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 O -0.330 6.330 4 C 0.062 3.938 5 C -0.156 4.156 6 C -0.174 4.174 7 C 0.177 3.823 8 N -0.744 5.744 9 C 0.141 3.859 10 C -0.080 4.080 11 H 0.057 0.943 12 C -0.127 4.127 13 C -0.005 4.005 14 C -0.519 4.519 15 H 0.035 0.965 16 C 0.000 4.000 17 N -0.954 5.954 18 Si 0.948 3.052 19 H -0.268 1.268 20 H -0.288 1.288 21 H -0.244 1.244 22 C -0.149 4.149 23 C -0.091 4.091 24 C 0.134 3.866 25 O -0.586 6.586 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.146 0.854 32 H 0.128 0.872 33 H 0.401 0.599 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.037 0.963 38 H 0.050 0.950 39 H 0.021 0.979 40 H 0.021 0.979 41 H 0.264 0.736 42 H 0.132 0.868 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.077 1.850 -1.818 31.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 O -0.245 6.245 4 C 0.015 3.985 5 C -0.175 4.175 6 C -0.197 4.197 7 C 0.074 3.926 8 N -0.375 5.375 9 C 0.017 3.983 10 C -0.099 4.099 11 H 0.076 0.924 12 C -0.185 4.185 13 C -0.043 4.043 14 C -0.557 4.557 15 H 0.054 0.946 16 C -0.196 4.196 17 N -0.595 5.595 18 Si 0.771 3.229 19 H -0.193 1.193 20 H -0.214 1.214 21 H -0.168 1.168 22 C -0.172 4.172 23 C -0.092 4.092 24 C 0.056 3.944 25 O -0.395 6.395 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.164 0.836 32 H 0.146 0.854 33 H 0.236 0.764 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.039 0.961 40 H 0.040 0.960 41 H 0.073 0.927 42 H 0.150 0.850 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -30.486 1.325 -1.800 30.568 hybrid contribution 0.651 -0.139 0.096 0.672 sum -29.835 1.186 -1.705 29.908 Atomic orbital electron populations 1.21778 0.91494 1.03956 1.03166 1.22965 0.96777 0.81321 1.01798 1.85990 1.18213 1.30497 1.89774 1.18427 0.82836 0.92962 1.04238 1.21117 0.93071 0.98536 1.04764 1.20656 0.95301 0.95639 1.08114 1.17979 0.84166 0.93899 0.96536 1.44728 1.01643 1.08574 1.82515 1.21291 0.88230 0.88167 1.00637 1.21063 0.92685 0.97848 0.98326 0.92425 1.21643 1.00590 0.99627 0.96597 1.19520 0.93279 0.94852 0.96625 1.21423 0.91732 0.93704 1.48854 0.94621 1.26010 0.94664 1.04386 0.94518 1.70078 1.00475 1.36335 1.52604 0.85694 0.79117 0.79229 0.78830 1.19295 1.21383 1.16762 1.20272 0.91843 0.97868 1.07195 1.19029 0.93736 0.92302 1.04164 1.20605 0.90715 0.82013 1.01023 1.86414 1.38576 1.16694 1.97816 0.91806 0.91784 0.88582 0.91692 0.91741 0.83597 0.85370 0.76376 0.92193 0.92696 0.92099 0.94371 0.93092 0.96109 0.96022 0.92696 0.85016 0.91495 0.91534 0.74911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 71.98 0.74 -0.65 16 2 C 0.05 0.64 5.46 71.98 0.39 1.03 16 3 O -0.33 -6.72 9.56 -93.53 -0.89 -7.61 16 4 C 0.06 1.46 6.66 22.49 0.15 1.61 16 5 C -0.16 -3.56 9.03 22.35 0.20 -3.36 16 6 C -0.17 -4.52 9.31 22.39 0.21 -4.31 16 7 C 0.18 4.93 6.66 38.14 0.25 5.19 16 8 N -0.74 -20.96 5.47 -339.28 -1.86 -22.82 16 9 C 0.14 4.31 4.30 86.38 0.37 4.69 16 10 C -0.08 -2.99 2.37 -10.79 -0.03 -3.01 16 11 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 12 C -0.13 -4.55 8.88 71.98 0.64 -3.91 16 13 C 0.00 -0.22 3.52 29.85 0.10 -0.12 16 14 C -0.52 -29.37 8.96 25.60 0.23 -29.15 16 15 H 0.04 2.22 7.30 -2.91 -0.02 2.20 16 16 C 0.00 0.02 5.47 84.65 0.46 0.49 16 17 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 18 Si 0.95 44.02 27.47 68.60 1.88 45.90 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.24 -10.41 6.54 99.48 0.65 -9.76 16 22 C -0.15 -4.03 9.22 22.39 0.21 -3.82 16 23 C -0.09 -2.26 5.89 -19.78 -0.12 -2.37 16 24 C 0.13 2.57 6.90 71.24 0.49 3.06 16 25 O -0.59 -10.84 12.14 -148.98 -1.81 -12.65 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 28 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 30 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 31 H 0.15 2.56 6.29 -2.91 -0.02 2.55 16 32 H 0.13 3.15 6.73 -2.91 -0.02 3.14 16 33 H 0.40 10.79 7.67 -92.70 -0.71 10.08 16 34 H 0.06 1.77 7.94 -2.39 -0.02 1.75 16 35 H 0.05 1.67 7.96 -2.38 -0.02 1.65 16 36 H 0.06 1.83 7.18 -2.39 -0.02 1.81 16 37 H 0.04 1.57 6.95 -2.39 -0.02 1.56 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.02 0.92 7.20 -2.39 -0.02 0.91 16 40 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 41 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 42 H 0.13 3.55 7.00 -2.91 -0.02 3.53 16 43 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.40 3.23 9.12 -74.05 -0.68 2.55 16 Total: -1.00 -69.60 361.79 1.49 -68.12 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: -0.45 Total: 23.40 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 4.31 Total: -34.64 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -1.56 Total: -82.52 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -2.70 Total: -20.26 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Total: -69.60 1.49 -68.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876847286.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.536 kcal (2) G-P(sol) polarization free energy of solvation -69.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds