Wall clock time and date at job start Tue Mar 31 2020 06:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42893 * 109.47028 * 2 1 4 4 C 1.36008 * 116.99689 * 180.02562 * 3 2 1 5 5 C 1.38719 * 119.98341 * 359.97438 * 4 3 2 6 6 C 1.38081 * 120.01999 * 180.02562 * 5 4 3 7 7 C 1.38886 * 119.98395 * 359.97438 * 6 5 4 8 8 N 1.39938 * 120.02012 * 180.02562 * 7 6 5 9 9 C 1.46494 * 119.99870 * 0.02562 * 8 7 6 10 10 C 1.53005 * 109.46777 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.47448 * 304.99480 * 10 9 8 12 12 C 1.53001 * 109.47080 * 65.00298 * 10 9 8 13 13 C 1.53002 * 109.46893 * 184.99600 * 10 9 8 14 14 C 1.50706 * 109.47153 * 174.99718 * 13 10 9 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 C 1.38841 * 119.95560 * 0.27758 * 7 6 5 23 23 C 1.38126 * 119.98141 * 359.44607 * 22 7 6 24 24 C 1.50707 * 119.98848 * 180.25674 * 23 22 7 25 25 O 1.42897 * 109.47313 * 0.29506 * 24 23 22 26 26 H 1.09003 * 109.46836 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47026 * 300.00185 * 1 2 3 28 28 H 1.09003 * 109.46611 * 60.00260 * 1 2 3 29 29 H 1.08998 * 109.47026 * 239.99815 * 2 1 3 30 30 H 1.08999 * 109.46801 * 120.00475 * 2 1 3 31 31 H 1.08004 * 119.98439 * 0.04407 * 5 4 3 32 32 H 1.08005 * 120.00722 * 179.97438 * 6 5 4 33 33 H 0.96998 * 119.99307 * 179.97438 * 8 7 6 34 34 H 1.08997 * 109.47647 * 60.00035 * 9 8 7 35 35 H 1.09001 * 109.47420 * 299.99554 * 9 8 7 36 36 H 1.09001 * 109.46866 * 299.99538 * 12 10 9 37 37 H 1.09000 * 109.47309 * 59.99633 * 12 10 9 38 38 H 1.09000 * 109.46932 * 180.02562 * 12 10 9 39 39 H 1.09004 * 109.47178 * 55.00508 * 13 10 9 40 40 H 1.08993 * 109.47411 * 295.00191 * 13 10 9 41 41 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 42 42 H 1.08004 * 120.00437 * 179.72717 * 22 7 6 43 43 H 1.09000 * 109.47149 * 120.30329 * 24 23 22 44 44 H 1.09002 * 109.46615 * 240.29951 * 24 23 22 45 45 H 0.96695 * 114.00019 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3547 1.5254 -0.0005 5 6 4.1994 0.4250 -0.0005 6 6 5.5684 0.6050 -0.0005 7 6 6.0998 1.8882 -0.0011 8 7 7.4871 2.0715 -0.0017 9 6 8.3794 0.9096 -0.0022 10 6 9.8341 1.3839 -0.0034 11 1 9.9963 2.0567 -0.8454 12 6 10.1310 2.1217 1.3037 13 6 10.7643 0.1757 -0.1296 14 6 12.1894 0.6497 -0.2544 15 1 12.4096 1.7069 -0.2442 16 6 13.2120 -0.2662 -0.3815 17 7 12.9444 -1.5539 -0.3885 18 14 14.9785 0.3213 -0.5354 19 1 15.3132 0.5128 -1.9695 20 1 15.1363 1.6096 0.1860 21 1 15.8903 -0.6914 0.0548 22 6 5.2536 2.9889 0.0042 23 6 3.8844 2.8070 -0.0016 24 6 2.9658 4.0018 -0.0017 25 8 3.7435 5.2006 -0.0023 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.7860 -0.5728 -0.0008 32 1 6.2259 -0.2519 -0.0001 33 1 7.8578 2.9678 -0.0024 34 1 8.1929 0.3086 -0.8922 35 1 8.1937 0.3084 0.8878 36 1 9.4684 2.9824 1.3936 37 1 9.9689 1.4487 2.1457 38 1 11.1672 2.4599 1.3026 39 1 10.4941 -0.4000 -1.0150 40 1 10.6664 -0.4523 0.7559 41 1 12.0271 -1.8590 -0.3083 42 1 5.6660 3.9871 0.0082 43 1 2.3366 3.9763 -0.8915 44 1 2.3373 3.9768 0.8885 45 1 3.2164 6.0113 -0.0028 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876847287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:57 Heat of formation + Delta-G solvation = -87.647520 kcal Electronic energy + Delta-G solvation = -22920.196500 eV Core-core repulsion = 19515.928379 eV Total energy + Delta-G solvation = -3404.268121 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.28149 -38.25138 -37.17067 -36.13381 -33.93042 -32.32494 -31.61326 -31.28073 -28.53010 -26.58638 -25.94242 -25.41257 -24.07310 -22.83400 -21.57711 -20.62465 -19.50826 -18.17863 -17.55890 -16.85820 -16.57986 -16.26613 -15.61418 -15.02463 -14.82544 -14.60061 -14.36775 -13.93573 -13.76600 -13.42539 -13.33061 -13.29393 -12.89688 -12.79068 -12.53047 -12.05870 -11.83898 -11.78638 -11.66769 -11.52537 -11.13581 -10.99749 -10.71954 -10.68178 -10.46450 -10.35553 -10.12320 -9.99663 -9.60924 -9.31101 -8.69422 -8.53824 -8.33165 -6.92678 -6.36137 -4.05039 1.38426 1.71312 3.16899 3.43105 3.46481 3.61994 3.75845 3.88580 4.02219 4.54169 4.67762 4.70784 4.87049 4.94760 5.02164 5.16926 5.23281 5.36061 5.37464 5.40078 5.49785 5.50917 5.51155 5.61912 5.69217 5.73432 5.83661 5.99891 6.11981 6.21852 6.32812 6.34773 6.43077 6.48166 6.69428 6.78562 6.88718 6.97199 7.33109 7.36342 7.46039 7.49330 7.63168 8.01622 8.20570 8.46035 8.88273 9.66474 11.04425 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025159 B = 0.002631 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.673169 B =10640.651476 C =11595.665500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.323 6.323 4 C 0.062 3.938 5 C -0.154 4.154 6 C -0.163 4.163 7 C 0.193 3.807 8 N -0.742 5.742 9 C 0.128 3.872 10 C -0.089 4.089 11 H 0.063 0.937 12 C -0.131 4.131 13 C 0.016 3.984 14 C -0.596 4.596 15 H 0.050 0.950 16 C 0.013 3.987 17 N -0.915 5.915 18 Si 1.070 2.930 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.285 1.285 22 C -0.142 4.142 23 C -0.076 4.076 24 C 0.130 3.870 25 O -0.570 6.570 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.398 0.602 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.033 0.967 37 H 0.045 0.955 38 H 0.064 0.936 39 H 0.008 0.992 40 H 0.009 0.991 41 H 0.269 0.731 42 H 0.135 0.865 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.600 7.517 1.379 25.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.238 6.238 4 C 0.017 3.983 5 C -0.173 4.173 6 C -0.186 4.186 7 C 0.089 3.911 8 N -0.372 5.372 9 C 0.004 3.996 10 C -0.108 4.108 11 H 0.082 0.918 12 C -0.188 4.188 13 C -0.021 4.021 14 C -0.634 4.634 15 H 0.069 0.931 16 C -0.190 4.190 17 N -0.551 5.551 18 Si 0.899 3.101 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.210 1.210 22 C -0.164 4.164 23 C -0.078 4.078 24 C 0.053 3.947 25 O -0.375 6.375 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.233 0.767 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.026 0.974 40 H 0.027 0.973 41 H 0.079 0.921 42 H 0.153 0.847 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -22.576 6.509 1.225 23.528 hybrid contribution -1.807 0.839 0.139 1.997 sum -24.383 7.347 1.364 25.502 Atomic orbital electron populations 1.21762 0.93119 1.02645 1.03257 1.22671 0.95440 0.82591 1.01212 1.85983 1.19169 1.28543 1.90063 1.18282 0.82010 0.92948 1.05107 1.20869 0.93525 0.97434 1.05522 1.20512 0.94572 0.95839 1.07675 1.17860 0.84467 0.93306 0.95478 1.44911 1.01585 1.08978 1.81719 1.21579 0.90121 0.87717 1.00207 1.21288 0.91672 0.99917 0.97877 0.91834 1.21708 1.01529 0.98532 0.97075 1.19212 0.94580 0.92288 0.96016 1.22025 0.91923 0.94748 1.54721 0.93136 1.25830 1.05038 0.94172 0.93988 1.70754 1.23066 1.14564 1.46723 0.83523 0.74939 0.75008 0.76652 1.21505 1.21511 1.21035 1.20227 0.91339 0.98060 1.06811 1.18641 0.93540 0.90894 1.04700 1.20628 0.91269 0.82584 1.00215 1.86460 1.37503 1.15768 1.97793 0.90597 0.91695 0.91697 0.92341 0.92349 0.85739 0.85720 0.76719 0.92874 0.92884 0.94842 0.93603 0.91676 0.97425 0.97256 0.92103 0.84741 0.92439 0.92449 0.77355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.56 16 2 C 0.06 0.48 5.46 37.16 0.20 0.68 16 3 O -0.32 -3.72 9.56 -19.77 -0.19 -3.91 16 4 C 0.06 0.82 6.66 -39.24 -0.26 0.56 16 5 C -0.15 -2.00 9.03 -39.46 -0.36 -2.35 16 6 C -0.16 -2.36 9.31 -39.40 -0.37 -2.72 16 7 C 0.19 2.91 6.66 -83.69 -0.56 2.36 16 8 N -0.74 -11.41 5.47 -58.59 -0.32 -11.73 16 9 C 0.13 2.19 4.30 -4.04 -0.02 2.17 16 10 C -0.09 -1.76 2.37 -90.62 -0.22 -1.98 16 11 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 12 C -0.13 -2.45 8.88 37.16 0.33 -2.12 16 13 C 0.02 0.41 3.76 -27.88 -0.10 0.31 16 14 C -0.60 -16.62 8.41 -34.44 -0.29 -16.91 16 15 H 0.05 1.39 7.06 -52.49 -0.37 1.02 16 16 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 17 N -0.91 -27.97 13.65 55.43 0.76 -27.21 16 18 Si 1.07 25.34 29.90 -169.99 -5.08 20.25 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C -0.14 -2.03 9.22 -39.40 -0.36 -2.40 16 23 C -0.08 -1.03 5.89 -104.50 -0.62 -1.64 16 24 C 0.13 1.39 6.90 36.01 0.25 1.64 16 25 O -0.57 -5.80 12.14 -35.23 -0.43 -6.23 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 30 H 0.06 0.46 7.66 -51.93 -0.40 0.07 16 31 H 0.12 1.32 6.29 -52.48 -0.33 0.99 16 32 H 0.12 1.77 6.73 -52.48 -0.35 1.41 16 33 H 0.40 5.76 7.67 -40.82 -0.31 5.45 16 34 H 0.05 0.93 7.95 -51.93 -0.41 0.52 16 35 H 0.05 0.92 7.95 -51.93 -0.41 0.50 16 36 H 0.03 0.53 7.18 -51.93 -0.37 0.16 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.32 6.95 -51.93 -0.36 0.96 16 39 H 0.01 0.20 8.01 -51.93 -0.42 -0.22 16 40 H 0.01 0.24 8.00 -51.93 -0.42 -0.17 16 41 H 0.27 8.16 7.22 -40.82 -0.29 7.86 16 42 H 0.13 1.89 7.00 -52.48 -0.37 1.52 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.38 1.91 9.12 45.56 0.42 2.33 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -32.30 364.08 -8.41 -40.71 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.56 Total: 5.31 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: -2.08 Total: -22.68 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.44 Total: -38.94 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.62 Total: -10.14 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.08 Total: 20.25 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.30 -8.41 -40.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876847287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.935 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds