Wall clock time and date at job start Tue Mar 31 2020 06:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42893 * 109.47028 * 2 1 4 4 C 1.36008 * 116.99689 * 180.02562 * 3 2 1 5 5 C 1.38719 * 119.98341 * 359.97438 * 4 3 2 6 6 C 1.38081 * 120.01999 * 180.02562 * 5 4 3 7 7 C 1.38886 * 119.98395 * 359.97438 * 6 5 4 8 8 N 1.39938 * 120.02012 * 180.02562 * 7 6 5 9 9 C 1.46494 * 119.99870 * 0.02562 * 8 7 6 10 10 C 1.53005 * 109.46777 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.47448 * 304.99480 * 10 9 8 12 12 C 1.53001 * 109.47080 * 65.00298 * 10 9 8 13 13 C 1.53002 * 109.46893 * 184.99600 * 10 9 8 14 14 C 1.50706 * 109.47153 * 174.99718 * 13 10 9 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 C 1.38841 * 119.95560 * 0.27758 * 7 6 5 23 23 C 1.38126 * 119.98141 * 359.44607 * 22 7 6 24 24 C 1.50707 * 119.98848 * 180.25674 * 23 22 7 25 25 O 1.42897 * 109.47313 * 0.29506 * 24 23 22 26 26 H 1.09003 * 109.46836 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47026 * 300.00185 * 1 2 3 28 28 H 1.09003 * 109.46611 * 60.00260 * 1 2 3 29 29 H 1.08998 * 109.47026 * 239.99815 * 2 1 3 30 30 H 1.08999 * 109.46801 * 120.00475 * 2 1 3 31 31 H 1.08004 * 119.98439 * 0.04407 * 5 4 3 32 32 H 1.08005 * 120.00722 * 179.97438 * 6 5 4 33 33 H 0.96998 * 119.99307 * 179.97438 * 8 7 6 34 34 H 1.08997 * 109.47647 * 60.00035 * 9 8 7 35 35 H 1.09001 * 109.47420 * 299.99554 * 9 8 7 36 36 H 1.09001 * 109.46866 * 299.99538 * 12 10 9 37 37 H 1.09000 * 109.47309 * 59.99633 * 12 10 9 38 38 H 1.09000 * 109.46932 * 180.02562 * 12 10 9 39 39 H 1.09004 * 109.47178 * 55.00508 * 13 10 9 40 40 H 1.08993 * 109.47411 * 295.00191 * 13 10 9 41 41 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 42 42 H 1.08004 * 120.00437 * 179.72717 * 22 7 6 43 43 H 1.09000 * 109.47149 * 120.30329 * 24 23 22 44 44 H 1.09002 * 109.46615 * 240.29951 * 24 23 22 45 45 H 0.96695 * 114.00019 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3547 1.5254 -0.0005 5 6 4.1994 0.4250 -0.0005 6 6 5.5684 0.6050 -0.0005 7 6 6.0998 1.8882 -0.0011 8 7 7.4871 2.0715 -0.0017 9 6 8.3794 0.9096 -0.0022 10 6 9.8341 1.3839 -0.0034 11 1 9.9963 2.0567 -0.8454 12 6 10.1310 2.1217 1.3037 13 6 10.7643 0.1757 -0.1296 14 6 12.1894 0.6497 -0.2544 15 1 12.4096 1.7069 -0.2442 16 6 13.2120 -0.2662 -0.3815 17 7 12.9444 -1.5539 -0.3885 18 14 14.9785 0.3213 -0.5354 19 1 15.3132 0.5128 -1.9695 20 1 15.1363 1.6096 0.1860 21 1 15.8903 -0.6914 0.0548 22 6 5.2536 2.9889 0.0042 23 6 3.8844 2.8070 -0.0016 24 6 2.9658 4.0018 -0.0017 25 8 3.7435 5.2006 -0.0023 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.7860 -0.5728 -0.0008 32 1 6.2259 -0.2519 -0.0001 33 1 7.8578 2.9678 -0.0024 34 1 8.1929 0.3086 -0.8922 35 1 8.1937 0.3084 0.8878 36 1 9.4684 2.9824 1.3936 37 1 9.9689 1.4487 2.1457 38 1 11.1672 2.4599 1.3026 39 1 10.4941 -0.4000 -1.0150 40 1 10.6664 -0.4523 0.7559 41 1 12.0271 -1.8590 -0.3083 42 1 5.6660 3.9871 0.0082 43 1 2.3366 3.9763 -0.8915 44 1 2.3373 3.9768 0.8885 45 1 3.2164 6.0113 -0.0028 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876847287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:56 Heat of formation + Delta-G solvation = -108.742967 kcal Electronic energy + Delta-G solvation = -22921.111268 eV Core-core repulsion = 19515.928379 eV Total energy + Delta-G solvation = -3405.182888 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25524 -39.33093 -38.18665 -37.37719 -35.51474 -33.91026 -32.64011 -32.11635 -29.76477 -28.40511 -27.02529 -26.77448 -24.82144 -24.76628 -22.49235 -21.80326 -21.03534 -19.09244 -18.90596 -18.43358 -17.72658 -17.03098 -16.74207 -16.14943 -15.85411 -15.75487 -15.72200 -15.52617 -14.99152 -14.91602 -14.60170 -14.27895 -13.98783 -13.70580 -13.59180 -13.49664 -13.24218 -13.02782 -12.95479 -12.55100 -12.54502 -12.49990 -12.01137 -11.95285 -11.85708 -11.63905 -11.62063 -11.40864 -11.21710 -10.62522 -10.53142 -10.41512 -9.71123 -8.66047 -8.04813 -6.35498 0.33304 0.65306 1.52328 1.61238 1.78430 2.33913 2.51678 2.59600 2.82457 3.18071 3.29508 3.82679 3.93904 4.00618 4.05666 4.10034 4.17673 4.23807 4.33908 4.40163 4.42324 4.48356 4.59001 4.59782 4.65980 4.71122 4.79463 4.83009 4.98292 4.99010 5.00380 5.15985 5.22815 5.26487 5.29960 5.35542 5.38781 5.43850 5.57119 5.70809 6.02008 6.21427 6.32378 6.55480 6.61349 6.85941 6.94547 7.45095 8.74994 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025159 B = 0.002631 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.673169 B =10640.651476 C =11595.665500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.046 3.954 3 O -0.328 6.328 4 C 0.064 3.936 5 C -0.156 4.156 6 C -0.177 4.177 7 C 0.175 3.825 8 N -0.741 5.741 9 C 0.145 3.855 10 C -0.079 4.079 11 H 0.061 0.939 12 C -0.124 4.124 13 C 0.018 3.982 14 C -0.605 4.605 15 H 0.054 0.946 16 C -0.042 4.042 17 N -0.942 5.942 18 Si 1.118 2.882 19 H -0.274 1.274 20 H -0.268 1.268 21 H -0.285 1.285 22 C -0.146 4.146 23 C -0.089 4.089 24 C 0.134 3.866 25 O -0.586 6.586 26 H 0.095 0.905 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.145 0.855 32 H 0.121 0.879 33 H 0.402 0.598 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.041 0.959 38 H 0.047 0.953 39 H -0.013 1.013 40 H -0.009 1.009 41 H 0.255 0.745 42 H 0.135 0.865 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.985 8.787 1.502 27.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 O -0.243 6.243 4 C 0.018 3.982 5 C -0.175 4.175 6 C -0.200 4.200 7 C 0.073 3.927 8 N -0.373 5.373 9 C 0.020 3.980 10 C -0.097 4.097 11 H 0.079 0.921 12 C -0.181 4.181 13 C -0.020 4.020 14 C -0.643 4.643 15 H 0.072 0.928 16 C -0.239 4.239 17 N -0.580 5.580 18 Si 0.939 3.061 19 H -0.200 1.200 20 H -0.193 1.193 21 H -0.210 1.210 22 C -0.169 4.169 23 C -0.091 4.091 24 C 0.057 3.943 25 O -0.395 6.395 26 H 0.114 0.886 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.163 0.837 32 H 0.139 0.861 33 H 0.238 0.762 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.006 0.994 40 H 0.009 0.991 41 H 0.065 0.935 42 H 0.153 0.847 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -24.020 7.812 1.348 25.295 hybrid contribution -1.544 0.439 0.098 1.608 sum -25.565 8.251 1.446 26.902 Atomic orbital electron populations 1.21779 0.91327 1.03985 1.03239 1.22974 0.96895 0.81308 1.01749 1.85993 1.18071 1.30486 1.89733 1.18414 0.82855 0.92915 1.04065 1.21099 0.92952 0.98644 1.04813 1.20630 0.95383 0.95619 1.08373 1.17993 0.84143 0.93922 0.96674 1.44671 1.01633 1.08365 1.82614 1.21196 0.88743 0.88202 0.99833 1.21081 0.92335 0.97710 0.98619 0.92085 1.21620 1.01164 0.99364 0.95960 1.19139 0.94854 0.93842 0.94131 1.22429 0.93342 0.94939 1.53559 0.92811 1.27370 1.09539 0.93806 0.93217 1.70887 1.22254 1.15774 1.49088 0.82923 0.70158 0.75353 0.77640 1.19967 1.19315 1.21039 1.20278 0.91808 0.97794 1.07017 1.19045 0.93720 0.92335 1.03968 1.20602 0.90634 0.81912 1.01132 1.86406 1.38576 1.16680 1.97821 0.88587 0.91690 0.91726 0.91820 0.91772 0.83688 0.86063 0.76194 0.93621 0.93083 0.91696 0.93988 0.93386 0.99445 0.99051 0.93522 0.84697 0.91419 0.91376 0.74847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 71.98 0.74 -0.75 16 2 C 0.05 0.68 5.46 71.98 0.39 1.07 16 3 O -0.33 -6.95 9.56 -93.65 -0.90 -7.84 16 4 C 0.06 1.58 6.66 22.49 0.15 1.73 16 5 C -0.16 -3.86 9.03 22.35 0.20 -3.66 16 6 C -0.18 -5.06 9.31 22.39 0.21 -4.85 16 7 C 0.18 5.21 6.66 38.15 0.25 5.47 16 8 N -0.74 -22.42 5.47 -339.27 -1.86 -24.28 16 9 C 0.14 5.00 4.30 86.38 0.37 5.37 16 10 C -0.08 -3.14 2.37 -10.79 -0.03 -3.16 16 11 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 12 C -0.12 -4.53 8.88 71.98 0.64 -3.89 16 13 C 0.02 0.92 3.76 29.85 0.11 1.03 16 14 C -0.60 -34.08 8.41 25.60 0.22 -33.86 16 15 H 0.05 2.94 7.06 -2.91 -0.02 2.92 16 16 C -0.04 -2.46 5.46 84.65 0.46 -2.00 16 17 N -0.94 -58.83 13.65 21.45 0.29 -58.54 16 18 Si 1.12 50.60 29.90 68.60 2.05 52.65 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 C -0.15 -4.08 9.22 22.39 0.21 -3.87 16 23 C -0.09 -2.28 5.89 -19.78 -0.12 -2.40 16 24 C 0.13 2.61 6.90 71.24 0.49 3.10 16 25 O -0.59 -10.81 12.14 -148.98 -1.81 -12.62 16 26 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.89 7.66 -2.39 -0.02 0.87 16 30 H 0.06 0.89 7.66 -2.39 -0.02 0.87 16 31 H 0.15 2.85 6.29 -2.91 -0.02 2.84 16 32 H 0.12 3.46 6.73 -2.91 -0.02 3.44 16 33 H 0.40 11.24 7.67 -92.71 -0.71 10.53 16 34 H 0.05 1.63 7.95 -2.39 -0.02 1.61 16 35 H 0.05 1.78 7.95 -2.39 -0.02 1.76 16 36 H 0.06 1.96 7.18 -2.39 -0.02 1.94 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.91 6.95 -2.39 -0.02 1.89 16 39 H -0.01 -0.70 8.01 -2.39 -0.02 -0.72 16 40 H -0.01 -0.48 8.00 -2.39 -0.02 -0.50 16 41 H 0.26 16.11 7.22 -92.71 -0.67 15.44 16 42 H 0.14 3.67 7.00 -2.91 -0.02 3.65 16 43 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.40 3.17 9.12 -74.06 -0.68 2.49 16 Total: -1.00 -69.48 364.08 1.79 -67.69 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -0.30 Total: 23.63 kcal Atomic # 6 Polarization: -44.99 SS G_CDS: 4.30 Total: -40.69 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -1.56 Total: -82.82 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -2.70 Total: -20.47 kcal Atomic # 14 Polarization: 50.60 SS G_CDS: 2.05 Total: 52.65 kcal Total: -69.48 1.79 -67.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876847287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.056 kcal (2) G-P(sol) polarization free energy of solvation -69.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds