Wall clock time and date at job start Tue Mar 31 2020 06:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99858 * 2 1 4 4 O 1.20818 * 119.99976 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99572 * 180.02562 * 3 2 1 6 6 C 1.54164 * 112.51562 * 299.72557 * 5 3 2 7 7 C 1.54848 * 104.32256 * 260.85544 * 6 5 3 8 8 C 1.56417 * 103.23110 * 322.22916 * 7 6 5 9 9 C 1.54164 * 103.57678 * 37.29392 * 8 7 6 10 10 H 1.08994 * 111.80156 * 100.13338 * 9 8 7 11 11 C 1.54323 * 108.86118 * 224.17563 * 9 8 7 12 12 N 1.48527 * 104.67401 * 138.40393 * 11 9 8 13 13 C 1.46902 * 110.99934 * 200.80970 * 12 11 9 14 14 C 1.52993 * 109.47496 * 72.77541 * 13 12 11 15 15 C 1.50706 * 115.55177 * 290.20249 * 14 13 12 16 16 H 1.08000 * 120.00250 * 142.81440 * 15 14 13 17 17 C 1.37877 * 119.99737 * 322.82086 * 15 14 13 18 18 N 1.31515 * 119.99930 * 343.08813 * 17 15 14 19 19 Si 1.86800 * 120.00020 * 163.09381 * 17 15 14 20 20 H 1.48493 * 109.47192 * 54.79240 * 19 17 15 21 21 H 1.48498 * 109.46982 * 174.79384 * 19 17 15 22 22 H 1.48503 * 109.47026 * 294.79131 * 19 17 15 23 23 C 1.52998 * 117.50184 * 144.53000 * 14 13 12 24 24 C 1.53006 * 117.49977 * 75.86936 * 14 13 12 25 25 C 1.48532 * 104.21221 * 320.35450 * 12 11 9 26 26 H 1.08998 * 109.47301 * 59.99832 * 1 2 3 27 27 H 1.09004 * 109.46671 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 299.99127 * 1 2 3 29 29 H 1.08996 * 110.46248 * 19.56435 * 6 5 3 30 30 H 1.08997 * 110.46246 * 142.14700 * 6 5 3 31 31 H 1.09000 * 110.75555 * 80.13222 * 7 6 5 32 32 H 1.09003 * 110.75820 * 203.31926 * 7 6 5 33 33 H 1.08993 * 109.59313 * 279.40606 * 8 7 6 34 34 H 1.08997 * 112.03576 * 156.35130 * 8 7 6 35 35 H 1.09000 * 110.39085 * 257.19866 * 11 9 8 36 36 H 1.09001 * 110.39609 * 19.48426 * 11 9 8 37 37 H 1.09001 * 109.47297 * 192.77772 * 13 12 11 38 38 H 1.09004 * 109.46624 * 312.77426 * 13 12 11 39 39 H 0.97002 * 120.00230 * 185.30232 * 18 17 15 40 40 H 1.08994 * 117.49630 * 0.02562 * 23 14 13 41 41 H 1.09000 * 117.50077 * 145.02222 * 23 14 13 42 42 H 1.08997 * 117.49680 * 214.98331 * 24 14 13 43 43 H 1.09000 * 117.49594 * 0.02562 * 24 14 13 44 44 H 1.08998 * 110.39641 * 158.43503 * 25 12 11 45 45 H 1.08996 * 110.40108 * 280.72997 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1932 0.6002 1.2358 7 6 4.4996 1.7738 2.1984 8 6 4.9729 2.9122 1.2357 9 6 4.0679 2.7404 -0.0004 10 1 3.2426 3.4524 0.0001 11 6 4.9323 2.8650 -1.2728 12 7 4.4286 1.7986 -2.1756 13 6 5.4290 1.4563 -3.1954 14 6 6.5697 0.6693 -2.5471 15 6 7.4558 1.4567 -1.6165 16 1 7.8419 0.9957 -0.7194 17 6 7.7736 2.7658 -1.9104 18 7 7.5971 3.2276 -3.1291 19 14 8.4548 3.8834 -0.5776 20 1 9.6538 3.2536 0.0314 21 1 8.8308 5.1910 -1.1726 22 1 7.4214 4.0941 0.4678 23 6 7.2226 -0.4396 -3.3746 24 6 6.3081 -0.7978 -2.2005 25 6 4.1733 0.6470 -1.2730 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 3.4857 -0.0920 1.6920 30 1 5.1123 0.0820 0.9621 31 1 3.5997 2.0817 2.7308 32 1 5.2880 1.5020 2.9003 33 1 6.0176 2.7538 0.9681 34 1 4.8364 3.9010 1.6735 35 1 4.7964 3.8452 -1.7298 36 1 5.9833 2.6995 -1.0357 37 1 4.9636 0.8486 -3.9715 38 1 5.8241 2.3707 -3.6381 39 1 7.8915 4.1237 -3.3556 40 1 6.8399 -0.6082 -4.3811 41 1 8.2931 -0.5999 -3.2457 42 1 6.7772 -1.1935 -1.2997 43 1 5.3235 -1.2024 -2.4348 44 1 3.4654 -0.0443 -1.7301 45 1 5.1060 0.1343 -1.0380 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880329102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:22 Heat of formation + Delta-G solvation = -37.531777 kcal Electronic energy + Delta-G solvation = -26321.734593 eV Core-core repulsion = 22919.639654 eV Total energy + Delta-G solvation = -3402.094939 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.80878 -39.05799 -36.96574 -36.01127 -33.73434 -32.59977 -30.50447 -29.06374 -27.51321 -25.95285 -24.99852 -24.79019 -22.37094 -21.34773 -20.49966 -20.23339 -18.99902 -18.50681 -16.90623 -16.70209 -16.23024 -16.08035 -14.99423 -14.70785 -14.62202 -13.98113 -13.77504 -13.50832 -13.43425 -13.01135 -12.92563 -12.29768 -12.00111 -11.91672 -11.68120 -11.45374 -11.30756 -11.06689 -10.87490 -10.78484 -10.65551 -10.60582 -10.55244 -10.36396 -10.17291 -10.12612 -9.99814 -9.82965 -9.66351 -9.58485 -9.08872 -8.77130 -8.06057 -7.14901 -6.21524 -4.17610 2.53755 2.94602 3.16071 3.24179 3.26163 4.20048 4.65473 4.78277 4.83283 5.01686 5.15683 5.18559 5.22877 5.37747 5.47854 5.54941 5.61737 5.70664 5.76559 5.92151 5.99300 6.05228 6.08507 6.23439 6.29917 6.33539 6.39491 6.44126 6.47958 6.55565 6.56956 6.59263 6.68426 6.75775 6.90049 6.95330 7.03094 7.20482 7.32091 7.37606 7.50482 7.76615 8.03001 8.05826 8.16209 8.35595 8.72328 9.30561 10.78266 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017254 B = 0.007271 C = 0.006103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.459801 B = 3850.038683 C = 4586.544086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.488 3.512 4 O -0.508 6.508 5 C -0.057 4.057 6 C -0.106 4.106 7 C -0.124 4.124 8 C -0.123 4.123 9 C -0.082 4.082 10 H 0.088 0.912 11 C 0.008 3.992 12 N -0.504 5.504 13 C 0.066 3.934 14 C 0.026 3.974 15 C -0.494 4.494 16 H 0.062 0.938 17 C 0.080 3.920 18 N -0.864 5.864 19 Si 0.868 3.132 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.258 1.258 23 C -0.200 4.200 24 C -0.214 4.214 25 C 0.030 3.970 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.126 0.874 37 H 0.037 0.963 38 H 0.123 0.877 39 H 0.267 0.733 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.862 -4.404 7.137 11.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.332 3.668 4 O -0.395 6.395 5 C -0.059 4.059 6 C -0.144 4.144 7 C -0.162 4.162 8 C -0.161 4.161 9 C -0.101 4.101 10 H 0.106 0.894 11 C -0.119 4.119 12 N -0.226 5.226 13 C -0.062 4.062 14 C 0.025 3.975 15 C -0.530 4.530 16 H 0.080 0.920 17 C -0.125 4.125 18 N -0.499 5.499 19 Si 0.694 3.306 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.183 1.183 23 C -0.238 4.238 24 C -0.251 4.251 25 C -0.098 4.098 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.143 0.857 37 H 0.055 0.945 38 H 0.141 0.859 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.633 -3.717 6.699 11.542 hybrid contribution 0.789 0.273 0.856 1.196 sum -7.843 -3.444 7.555 11.422 Atomic orbital electron populations 1.23193 0.77255 1.03200 1.02254 1.86524 1.22659 1.33953 1.84355 1.23503 0.91566 0.80836 0.70940 1.90583 1.66938 1.36460 1.45550 1.21787 0.85756 0.99170 0.99142 1.22459 1.01082 0.97354 0.93491 1.22779 1.00517 0.95429 0.97446 1.22895 1.00589 0.97718 0.94899 1.22559 0.97996 0.93073 0.96515 0.89403 1.24072 1.02595 0.95005 0.90248 1.65724 1.40066 1.05365 1.11483 1.22046 0.88681 1.02809 0.92644 1.19623 0.95669 0.85425 0.96809 1.20409 1.30105 0.95514 1.07014 0.91984 1.24910 0.94458 0.97913 0.95223 1.69796 1.44523 1.18256 1.17329 0.87116 0.80015 0.80446 0.83065 1.20011 1.20936 1.18267 1.22950 0.97285 1.10095 0.93501 1.22993 0.99142 1.03617 0.99368 1.23735 1.01034 0.94928 0.90063 0.92076 0.88456 0.92315 0.91407 0.89353 0.92270 0.91335 0.89974 0.91820 0.92490 0.85717 0.94495 0.85917 0.92265 0.91785 0.90619 0.90646 0.91128 0.91857 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.54 10.32 -39.25 -0.40 -5.95 16 3 C 0.49 8.72 6.61 36.00 0.24 8.95 16 4 O -0.51 -10.09 15.23 -18.74 -0.29 -10.37 16 5 C -0.06 -1.01 0.90 -153.35 -0.14 -1.15 16 6 C -0.11 -1.62 6.01 -25.15 -0.15 -1.77 16 7 C -0.12 -1.80 6.93 -23.92 -0.17 -1.97 16 8 C -0.12 -2.11 6.50 -24.29 -0.16 -2.27 16 9 C -0.08 -1.57 3.43 -88.31 -0.30 -1.87 16 10 H 0.09 1.75 6.77 -51.93 -0.35 1.40 16 11 C 0.01 0.16 5.43 -2.23 -0.01 0.15 16 12 N -0.50 -10.96 5.65 -230.10 -1.30 -12.26 16 13 C 0.07 1.52 5.42 -3.83 -0.02 1.50 16 14 C 0.03 0.60 1.04 -155.66 -0.16 0.44 16 15 C -0.49 -12.05 7.16 -34.44 -0.25 -12.30 16 16 H 0.06 1.53 7.87 -52.49 -0.41 1.12 16 17 C 0.08 1.95 3.35 -17.82 -0.06 1.89 16 18 N -0.86 -22.19 10.95 55.43 0.61 -21.59 16 19 Si 0.87 18.93 28.18 -169.99 -4.79 14.14 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 22 H -0.26 -5.30 5.80 56.52 0.33 -4.97 16 23 C -0.20 -4.36 9.91 -26.69 -0.26 -4.62 16 24 C -0.21 -4.33 7.11 -26.69 -0.19 -4.52 16 25 C 0.03 0.59 4.29 -2.23 -0.01 0.58 16 26 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 27 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 29 H 0.07 0.92 7.78 -51.93 -0.40 0.52 16 30 H 0.09 1.37 7.18 -51.93 -0.37 1.00 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.54 5.36 -51.93 -0.28 1.26 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.13 2.82 1.15 -51.93 -0.06 2.76 16 37 H 0.04 0.82 8.06 -51.93 -0.42 0.41 16 38 H 0.12 3.14 5.42 -51.93 -0.28 2.86 16 39 H 0.27 6.64 8.32 -40.82 -0.34 6.31 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 42 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.07 1.35 7.24 -51.93 -0.38 0.97 16 44 H 0.06 1.20 7.74 -51.93 -0.40 0.80 16 45 H 0.10 2.03 2.99 -51.93 -0.16 1.87 16 LS Contribution 332.27 15.07 5.01 5.01 Total: -1.00 -26.64 332.27 -8.69 -35.33 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -6.95 Total: 11.16 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -0.57 Total: -15.48 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: -0.69 Total: -33.84 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.69 Total: -16.32 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.79 Total: 14.14 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.64 -8.69 -35.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880329102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.197 kcal (2) G-P(sol) polarization free energy of solvation -26.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds