Wall clock time and date at job start Tue Mar 31 2020 06:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99858 * 2 1 4 4 O 1.20818 * 119.99976 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99572 * 180.02562 * 3 2 1 6 6 C 1.54164 * 112.51562 * 299.72557 * 5 3 2 7 7 C 1.54848 * 104.32256 * 260.85544 * 6 5 3 8 8 C 1.56417 * 103.23110 * 322.22916 * 7 6 5 9 9 C 1.54164 * 103.57678 * 37.29392 * 8 7 6 10 10 H 1.08994 * 111.80156 * 100.13338 * 9 8 7 11 11 C 1.54323 * 108.86118 * 224.17563 * 9 8 7 12 12 N 1.48527 * 104.67401 * 138.40393 * 11 9 8 13 13 C 1.46902 * 110.99934 * 200.80970 * 12 11 9 14 14 C 1.52993 * 109.47496 * 72.77541 * 13 12 11 15 15 C 1.50706 * 115.55177 * 290.20249 * 14 13 12 16 16 H 1.08000 * 120.00250 * 142.81440 * 15 14 13 17 17 C 1.37877 * 119.99737 * 322.82086 * 15 14 13 18 18 N 1.31515 * 119.99930 * 343.08813 * 17 15 14 19 19 Si 1.86800 * 120.00020 * 163.09381 * 17 15 14 20 20 H 1.48493 * 109.47192 * 54.79240 * 19 17 15 21 21 H 1.48498 * 109.46982 * 174.79384 * 19 17 15 22 22 H 1.48503 * 109.47026 * 294.79131 * 19 17 15 23 23 C 1.52998 * 117.50184 * 144.53000 * 14 13 12 24 24 C 1.53006 * 117.49977 * 75.86936 * 14 13 12 25 25 C 1.48532 * 104.21221 * 320.35450 * 12 11 9 26 26 H 1.08998 * 109.47301 * 59.99832 * 1 2 3 27 27 H 1.09004 * 109.46671 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 299.99127 * 1 2 3 29 29 H 1.08996 * 110.46248 * 19.56435 * 6 5 3 30 30 H 1.08997 * 110.46246 * 142.14700 * 6 5 3 31 31 H 1.09000 * 110.75555 * 80.13222 * 7 6 5 32 32 H 1.09003 * 110.75820 * 203.31926 * 7 6 5 33 33 H 1.08993 * 109.59313 * 279.40606 * 8 7 6 34 34 H 1.08997 * 112.03576 * 156.35130 * 8 7 6 35 35 H 1.09000 * 110.39085 * 257.19866 * 11 9 8 36 36 H 1.09001 * 110.39609 * 19.48426 * 11 9 8 37 37 H 1.09001 * 109.47297 * 192.77772 * 13 12 11 38 38 H 1.09004 * 109.46624 * 312.77426 * 13 12 11 39 39 H 0.97002 * 120.00230 * 185.30232 * 18 17 15 40 40 H 1.08994 * 117.49630 * 0.02562 * 23 14 13 41 41 H 1.09000 * 117.50077 * 145.02222 * 23 14 13 42 42 H 1.08997 * 117.49680 * 214.98331 * 24 14 13 43 43 H 1.09000 * 117.49594 * 0.02562 * 24 14 13 44 44 H 1.08998 * 110.39641 * 158.43503 * 25 12 11 45 45 H 1.08996 * 110.40108 * 280.72997 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1932 0.6002 1.2358 7 6 4.4996 1.7738 2.1984 8 6 4.9729 2.9122 1.2357 9 6 4.0679 2.7404 -0.0004 10 1 3.2426 3.4524 0.0001 11 6 4.9323 2.8650 -1.2728 12 7 4.4286 1.7986 -2.1756 13 6 5.4290 1.4563 -3.1954 14 6 6.5697 0.6693 -2.5471 15 6 7.4558 1.4567 -1.6165 16 1 7.8419 0.9957 -0.7194 17 6 7.7736 2.7658 -1.9104 18 7 7.5971 3.2276 -3.1291 19 14 8.4548 3.8834 -0.5776 20 1 9.6538 3.2536 0.0314 21 1 8.8308 5.1910 -1.1726 22 1 7.4214 4.0941 0.4678 23 6 7.2226 -0.4396 -3.3746 24 6 6.3081 -0.7978 -2.2005 25 6 4.1733 0.6470 -1.2730 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 3.4857 -0.0920 1.6920 30 1 5.1123 0.0820 0.9621 31 1 3.5997 2.0817 2.7308 32 1 5.2880 1.5020 2.9003 33 1 6.0176 2.7538 0.9681 34 1 4.8364 3.9010 1.6735 35 1 4.7964 3.8452 -1.7298 36 1 5.9833 2.6995 -1.0357 37 1 4.9636 0.8486 -3.9715 38 1 5.8241 2.3707 -3.6381 39 1 7.8915 4.1237 -3.3556 40 1 6.8399 -0.6082 -4.3811 41 1 8.2931 -0.5999 -3.2457 42 1 6.7772 -1.1935 -1.2997 43 1 5.3235 -1.2024 -2.4348 44 1 3.4654 -0.0443 -1.7301 45 1 5.1060 0.1343 -1.0380 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880329102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:21 Heat of formation + Delta-G solvation = -52.366466 kcal Electronic energy + Delta-G solvation = -26322.377874 eV Core-core repulsion = 22919.639654 eV Total energy + Delta-G solvation = -3402.738219 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.21582 -40.53003 -38.50738 -37.35461 -35.29390 -34.45479 -31.93782 -30.54088 -28.58821 -27.77676 -26.54264 -26.34208 -23.77912 -22.95247 -21.93250 -21.74702 -20.75793 -19.92107 -18.22619 -18.16505 -17.92852 -17.36075 -16.76186 -16.11868 -16.07859 -15.61619 -15.37431 -14.99785 -14.72854 -14.50423 -14.22754 -13.74887 -13.67773 -13.30620 -13.19628 -12.91097 -12.84425 -12.82345 -12.32525 -12.26487 -12.13685 -12.01755 -11.86180 -11.84138 -11.77071 -11.65161 -11.60163 -11.34509 -11.23147 -11.17227 -10.85950 -10.53874 -9.85991 -8.87114 -8.09993 -6.09429 1.16949 1.41102 1.46613 1.49287 1.74536 2.38636 2.95833 3.28172 3.38825 3.56540 3.69712 3.87925 4.05690 4.27447 4.31861 4.33115 4.33184 4.37092 4.39450 4.55752 4.58788 4.64207 4.69196 4.76858 4.80394 4.81545 4.88019 4.93304 5.01255 5.08053 5.16441 5.18712 5.21162 5.28266 5.33074 5.39621 5.47242 5.49725 5.52728 5.60047 5.73910 5.94821 6.25073 6.37644 6.53099 6.75004 6.83737 7.40553 8.88850 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017254 B = 0.007271 C = 0.006103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.459801 B = 3850.038683 C = 4586.544086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.490 3.510 4 O -0.535 6.535 5 C -0.057 4.057 6 C -0.102 4.102 7 C -0.115 4.115 8 C -0.125 4.125 9 C -0.082 4.082 10 H 0.074 0.926 11 C 0.007 3.993 12 N -0.516 5.516 13 C 0.074 3.926 14 C 0.004 3.996 15 C -0.498 4.498 16 H 0.058 0.942 17 C 0.049 3.951 18 N -0.890 5.890 19 Si 0.906 3.094 20 H -0.274 1.274 21 H -0.293 1.293 22 H -0.239 1.239 23 C -0.207 4.207 24 C -0.184 4.184 25 C 0.035 3.965 26 H 0.054 0.946 27 H 0.135 0.865 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.119 0.881 37 H 0.037 0.963 38 H 0.094 0.906 39 H 0.263 0.737 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.801 -6.069 9.264 14.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.335 3.665 4 O -0.424 6.424 5 C -0.059 4.059 6 C -0.140 4.140 7 C -0.152 4.152 8 C -0.163 4.163 9 C -0.101 4.101 10 H 0.093 0.907 11 C -0.120 4.120 12 N -0.238 5.238 13 C -0.055 4.055 14 C 0.002 3.998 15 C -0.534 4.534 16 H 0.076 0.924 17 C -0.153 4.153 18 N -0.527 5.527 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.219 1.219 22 H -0.163 1.163 23 C -0.246 4.246 24 C -0.221 4.221 25 C -0.093 4.093 26 H 0.073 0.927 27 H 0.153 0.847 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.136 0.864 37 H 0.056 0.944 38 H 0.112 0.888 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.086 0.914 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.580 -5.413 8.842 14.116 hybrid contribution 1.018 0.754 0.118 1.272 sum -8.563 -4.659 8.960 13.240 Atomic orbital electron populations 1.23565 0.74935 1.05779 1.02338 1.86498 1.24866 1.32381 1.83679 1.23441 0.91524 0.81160 0.70406 1.90576 1.67468 1.37470 1.46911 1.21766 0.86254 0.98221 0.99611 1.22485 1.01325 0.97826 0.92371 1.22769 1.01709 0.93738 0.97031 1.22881 0.99056 0.99577 0.94770 1.22489 0.97528 0.93960 0.96093 0.90719 1.23998 1.02840 0.93829 0.91315 1.65679 1.39511 1.06533 1.12058 1.21818 0.89101 1.01462 0.93092 1.19628 0.95941 0.86570 0.97658 1.20545 1.30059 0.95881 1.06964 0.92359 1.25372 0.94792 0.98841 0.96270 1.69919 1.45794 1.18197 1.18803 0.86498 0.79948 0.78654 0.81769 1.19902 1.21865 1.16291 1.22956 0.97216 1.09916 0.94499 1.22966 0.99363 1.00991 0.98748 1.23696 1.01070 0.94137 0.90365 0.92676 0.84653 0.91647 0.89199 0.89442 0.91091 0.89071 0.91670 0.90815 0.95015 0.86365 0.94447 0.88839 0.92755 0.91207 0.91450 0.89633 0.89550 0.91399 0.88224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.36 -10.08 10.32 -51.39 -0.53 -10.61 16 3 C 0.49 16.60 6.61 71.24 0.47 17.07 16 4 O -0.53 -20.67 15.23 21.99 0.33 -20.33 16 5 C -0.06 -1.92 0.90 -51.43 -0.05 -1.97 16 6 C -0.10 -2.80 6.01 31.62 0.19 -2.61 16 7 C -0.12 -2.95 6.93 32.42 0.22 -2.73 16 8 C -0.13 -4.06 6.50 32.18 0.21 -3.85 16 9 C -0.08 -3.05 3.43 -9.30 -0.03 -3.09 16 10 H 0.07 2.98 6.77 -2.39 -0.02 2.96 16 11 C 0.01 0.31 5.43 86.44 0.47 0.78 16 12 N -0.52 -22.51 5.65 -881.90 -4.98 -27.49 16 13 C 0.07 3.43 5.42 86.30 0.47 3.90 16 14 C 0.00 0.17 1.04 -52.93 -0.05 0.11 16 15 C -0.50 -24.23 7.16 25.60 0.18 -24.04 16 16 H 0.06 2.83 7.87 -2.91 -0.02 2.81 16 17 C 0.05 2.45 3.35 84.65 0.28 2.73 16 18 N -0.89 -47.09 10.95 21.45 0.23 -46.85 16 19 Si 0.91 38.83 28.18 68.60 1.93 40.76 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.24 -9.43 5.80 99.48 0.58 -8.85 16 23 C -0.21 -8.90 9.91 30.62 0.30 -8.59 16 24 C -0.18 -7.08 7.11 30.62 0.22 -6.86 16 25 C 0.03 1.30 4.29 86.44 0.37 1.67 16 26 H 0.05 1.19 8.13 -2.39 -0.02 1.17 16 27 H 0.14 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 29 H 0.09 2.07 7.78 -2.39 -0.02 2.05 16 30 H 0.09 2.43 7.18 -2.39 -0.02 2.41 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.06 2.34 5.36 -2.39 -0.01 2.33 16 34 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.12 5.39 1.15 -2.39 0.00 5.39 16 37 H 0.04 1.69 8.06 -2.39 -0.02 1.67 16 38 H 0.09 4.96 5.42 -2.39 -0.01 4.95 16 39 H 0.26 13.56 8.32 -92.71 -0.77 12.79 16 40 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 41 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 43 H 0.09 3.06 7.24 -2.39 -0.02 3.04 16 44 H 0.07 2.44 7.74 -2.39 -0.02 2.42 16 45 H 0.10 3.77 2.99 -2.39 -0.01 3.76 16 Total: -1.00 -57.65 332.27 2.31 -55.35 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.86 Total: 34.91 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 4.45 Total: -25.74 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -4.75 Total: -74.34 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.20 Total: -30.94 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.93 Total: 40.76 kcal Total: -57.65 2.31 -55.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880329102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.979 kcal (2) G-P(sol) polarization free energy of solvation -57.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds