Wall clock time and date at job start Tue Mar 31 2020 06:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46893 * 2 1 4 4 C 1.53000 * 109.46705 * 240.00555 * 2 1 3 5 5 O 1.42909 * 109.46863 * 175.87938 * 4 2 1 6 6 N 1.46896 * 109.47253 * 120.00611 * 2 1 3 7 7 C 1.46901 * 111.00455 * 29.10843 * 6 2 1 8 8 C 1.53003 * 109.47103 * 70.16762 * 7 6 2 9 9 O 1.42899 * 109.46811 * 58.90072 * 8 7 6 10 10 C 1.42909 * 113.99600 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.46773 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00080 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99954 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00287 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99967 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47419 * 89.99829 * 15 13 11 17 17 H 1.48502 * 109.47268 * 210.00033 * 15 13 11 18 18 H 1.48500 * 109.47102 * 330.00189 * 15 13 11 19 19 C 1.46899 * 110.99742 * 265.15364 * 6 2 1 20 20 C 1.50697 * 109.47335 * 287.11884 * 19 6 2 21 21 C 1.38233 * 120.00309 * 275.51183 * 20 19 6 22 22 C 1.38241 * 120.00059 * 179.76214 * 21 20 19 23 23 C 1.38239 * 119.99646 * 0.51206 * 22 21 20 24 24 C 1.38232 * 119.99733 * 359.74537 * 23 22 21 25 25 C 1.38232 * 120.00776 * 359.97438 * 24 23 22 26 26 H 1.09004 * 109.46914 * 296.47313 * 1 2 3 27 27 H 1.08992 * 109.47575 * 56.48268 * 1 2 3 28 28 H 1.09005 * 109.46764 * 176.47995 * 1 2 3 29 29 H 1.08993 * 109.47592 * 295.87765 * 4 2 1 30 30 H 1.08998 * 109.47444 * 55.88911 * 4 2 1 31 31 H 0.96694 * 114.00343 * 184.98989 * 5 4 2 32 32 H 1.08994 * 109.47427 * 190.17193 * 7 6 2 33 33 H 1.09004 * 109.46697 * 310.17543 * 7 6 2 34 34 H 1.08993 * 109.47477 * 178.90317 * 8 7 6 35 35 H 1.09005 * 109.46746 * 298.90557 * 8 7 6 36 36 H 1.09002 * 109.47102 * 299.99922 * 10 9 8 37 37 H 1.09001 * 109.47083 * 60.00405 * 10 9 8 38 38 H 0.96998 * 119.99976 * 180.02562 * 14 13 11 39 39 H 1.09007 * 109.46948 * 167.12550 * 19 6 2 40 40 H 1.08997 * 109.47422 * 47.12574 * 19 6 2 41 41 H 1.08004 * 120.00194 * 0.02562 * 21 20 19 42 42 H 1.08000 * 119.99996 * 180.23233 * 22 21 20 43 43 H 1.08000 * 119.99615 * 179.72043 * 23 22 21 44 44 H 1.08003 * 119.99254 * 179.97438 * 24 23 22 45 45 H 1.07995 * 120.00448 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 8 3.4657 -0.6379 -1.2988 6 7 2.0197 -0.6926 1.1993 7 6 1.0656 -1.7183 1.6415 8 6 1.0599 -2.8751 0.6401 9 8 2.3743 -3.4273 0.5429 10 6 2.4793 -4.5202 -0.3720 11 6 3.9001 -5.0220 -0.3940 12 1 4.6481 -4.5531 0.2281 13 6 4.2453 -6.0791 -1.2091 14 7 5.4853 -6.5168 -1.2287 15 14 2.9517 -6.8897 -2.2856 16 1 2.9084 -6.2094 -3.6049 17 1 3.2944 -8.3218 -2.4781 18 1 1.6237 -6.7824 -1.6296 19 6 2.3044 0.2619 2.2790 20 6 3.5591 1.0301 1.9526 21 6 4.7963 0.4974 2.2633 22 6 5.9474 1.1999 1.9594 23 6 5.8610 2.4398 1.3543 24 6 4.6236 2.9748 1.0484 25 6 3.4727 2.2698 1.3471 26 1 -0.3633 0.4581 0.9199 27 1 -0.3634 0.5674 -0.8567 28 1 -0.3633 -1.0258 -0.0631 29 1 1.7382 -1.7679 -1.2133 30 1 1.6177 -0.2516 -2.1377 31 1 3.8536 -1.0076 -2.1037 32 1 1.3597 -2.0891 2.6233 33 1 0.0674 -1.2844 1.7010 34 1 0.3664 -3.6450 0.9782 35 1 0.7468 -2.5079 -0.3374 36 1 1.8151 -5.3243 -0.0553 37 1 2.1959 -4.1868 -1.3704 38 1 5.7282 -7.2603 -1.8024 39 1 2.4429 -0.2791 3.2151 40 1 1.4697 0.9555 2.3803 41 1 4.8637 -0.4696 2.7397 42 1 6.9141 0.7820 2.1987 43 1 6.7602 2.9906 1.1209 44 1 4.5561 3.9437 0.5761 45 1 2.5060 2.6880 1.1085 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880375676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:03 Heat of formation + Delta-G solvation = -47.317075 kcal Electronic energy + Delta-G solvation = -24702.286796 eV Core-core repulsion = 21299.767535 eV Total energy + Delta-G solvation = -3402.519261 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.68052 -38.37989 -36.34829 -35.55208 -32.66153 -32.32186 -30.83897 -30.52455 -28.99376 -27.36530 -26.07333 -24.69249 -22.51113 -21.99030 -21.66697 -20.99663 -19.51800 -16.98028 -16.80044 -16.58844 -16.38953 -15.79425 -15.17729 -15.11698 -14.51303 -14.34459 -14.29005 -13.87026 -13.47998 -13.36342 -13.18615 -12.71004 -12.55953 -12.42979 -12.20966 -12.13485 -12.02212 -11.95972 -11.38280 -11.16765 -10.91271 -10.89296 -10.78681 -10.65224 -10.37177 -10.31944 -9.81769 -9.28897 -9.06879 -8.71449 -8.65397 -8.51744 -8.32645 -7.90973 -6.05066 -4.02513 1.56514 1.66088 3.25756 3.33317 3.34518 3.82885 4.27057 4.39535 4.55244 4.73803 4.93119 4.96763 5.07909 5.17855 5.22395 5.25775 5.26587 5.37224 5.46800 5.51903 5.58191 5.64176 5.67649 5.71890 5.77194 5.79238 5.85951 5.89290 5.95589 6.05883 6.16566 6.21477 6.27519 6.43257 6.64351 6.66626 6.74467 6.87207 7.05983 7.22498 7.33728 7.35716 7.67622 8.15158 8.26892 8.77587 9.10841 9.55202 11.08252 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.004720 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.495916 B = 5930.688361 C = 6756.336949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.078 3.922 3 H 0.082 0.918 4 C 0.084 3.916 5 O -0.547 6.547 6 N -0.498 5.498 7 C 0.051 3.949 8 C 0.055 3.945 9 O -0.353 6.353 10 C 0.169 3.831 11 C -0.508 4.508 12 H 0.083 0.917 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.873 3.127 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.268 1.268 19 C 0.094 3.906 20 C -0.064 4.064 21 C -0.083 4.083 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.126 4.126 25 C -0.116 4.116 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.028 0.972 31 H 0.372 0.628 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.036 0.964 35 H 0.043 0.957 36 H -0.003 1.003 37 H -0.009 1.009 38 H 0.265 0.735 39 H 0.081 0.919 40 H 0.035 0.965 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.107 17.871 4.095 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.030 4.030 3 H 0.100 0.900 4 C 0.005 3.995 5 O -0.350 6.350 6 N -0.221 5.221 7 C -0.076 4.076 8 C -0.023 4.023 9 O -0.271 6.271 10 C 0.093 3.907 11 C -0.546 4.546 12 H 0.102 0.898 13 C -0.130 4.130 14 N -0.536 5.536 15 Si 0.700 3.300 16 H -0.201 1.201 17 H -0.209 1.209 18 H -0.193 1.193 19 C -0.033 4.033 20 C -0.065 4.065 21 C -0.102 4.102 22 C -0.137 4.137 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.134 4.134 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.217 0.783 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.014 0.986 37 H 0.009 0.991 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.053 0.947 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.484 17.828 4.599 20.272 hybrid contribution -1.549 -0.581 -1.353 2.137 sum -10.033 17.247 3.246 20.215 Atomic orbital electron populations 1.22456 0.96922 1.02882 1.01938 1.21755 0.91871 0.98339 0.91063 0.89960 1.22362 0.82731 0.99853 0.94557 1.86564 1.18797 1.84326 1.45320 1.61963 1.44235 1.12325 1.03608 1.22336 0.94033 0.91990 0.99274 1.22549 0.88123 0.94098 0.97482 1.88096 1.24989 1.49815 1.64226 1.20543 0.98294 0.84449 0.87387 1.20883 0.93055 1.15375 1.25294 0.89844 1.24755 0.95221 0.96404 0.96601 1.69879 1.17123 1.26991 1.39598 0.86909 0.82563 0.79199 0.81370 1.20115 1.20891 1.19268 1.21055 0.93700 0.93671 0.94869 1.19640 0.94843 0.93839 0.98170 1.21023 0.91687 0.98870 0.98576 1.21138 0.98478 0.94930 0.99148 1.21052 0.97294 0.96220 0.99689 1.20967 0.92734 0.99747 1.00914 1.20907 0.97904 0.95058 0.99572 0.92253 0.92104 0.91287 0.92200 0.95374 0.78273 0.90367 0.93278 0.94612 0.93961 0.98568 0.99115 0.92528 0.90050 0.94671 0.85878 0.86318 0.86702 0.86802 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 7.78 37.16 0.29 -1.68 16 2 C 0.08 1.08 2.31 -67.71 -0.16 0.93 16 3 H 0.08 1.13 5.47 -51.93 -0.28 0.85 16 4 C 0.08 1.31 6.37 37.16 0.24 1.55 16 5 O -0.55 -9.99 13.59 -35.23 -0.48 -10.47 16 6 N -0.50 -7.58 4.09 -228.09 -0.93 -8.51 16 7 C 0.05 0.74 4.88 -3.82 -0.02 0.72 16 8 C 0.06 0.97 4.88 37.16 0.18 1.15 16 9 O -0.35 -8.26 9.88 -35.23 -0.35 -8.61 16 10 C 0.17 4.32 4.76 36.01 0.17 4.49 16 11 C -0.51 -15.23 9.99 -34.44 -0.34 -15.58 16 12 H 0.08 2.78 8.06 -52.49 -0.42 2.36 16 13 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 14 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 15 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 19 C 0.09 1.24 5.05 -4.98 -0.03 1.21 16 20 C -0.06 -0.91 5.05 -104.62 -0.53 -1.44 16 21 C -0.08 -1.25 9.72 -39.58 -0.38 -1.64 16 22 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 23 C -0.12 -1.57 10.05 -39.58 -0.40 -1.96 16 24 C -0.13 -1.54 10.05 -39.59 -0.40 -1.93 16 25 C -0.12 -1.48 8.36 -39.58 -0.33 -1.81 16 26 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.76 5.14 -51.93 -0.27 0.50 16 29 H 0.06 1.06 4.44 -51.93 -0.23 0.83 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.37 5.79 9.12 45.56 0.42 6.20 16 32 H 0.08 1.13 7.76 -51.93 -0.40 0.73 16 33 H 0.05 0.57 5.56 -51.93 -0.29 0.28 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.04 0.70 4.06 -51.93 -0.21 0.49 16 36 H 0.00 -0.08 7.20 -51.93 -0.37 -0.46 16 37 H -0.01 -0.22 7.57 -51.93 -0.39 -0.61 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.08 1.02 7.71 -51.93 -0.40 0.62 16 40 H 0.04 0.39 7.93 -51.93 -0.41 -0.02 16 41 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 42 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.11 1.12 8.06 -52.48 -0.42 0.70 16 45 H 0.11 1.21 7.53 -52.49 -0.40 0.82 16 LS Contribution 354.67 15.07 5.34 5.34 Total: -1.00 -34.22 354.67 -8.70 -42.92 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.19 Total: 5.64 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -2.20 Total: -16.02 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: -0.16 Total: -35.67 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.83 Total: -19.08 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.22 -8.70 -42.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880375676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.393 kcal (2) G-P(sol) polarization free energy of solvation -34.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds