Wall clock time and date at job start Tue Mar 31 2020 06:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46893 * 2 1 4 4 C 1.53000 * 109.46705 * 240.00555 * 2 1 3 5 5 O 1.42909 * 109.46863 * 175.87938 * 4 2 1 6 6 N 1.46896 * 109.47253 * 120.00611 * 2 1 3 7 7 C 1.46901 * 111.00455 * 29.10843 * 6 2 1 8 8 C 1.53003 * 109.47103 * 70.16762 * 7 6 2 9 9 O 1.42899 * 109.46811 * 58.90072 * 8 7 6 10 10 C 1.42909 * 113.99600 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.46773 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00080 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99954 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00287 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99967 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47419 * 89.99829 * 15 13 11 17 17 H 1.48502 * 109.47268 * 210.00033 * 15 13 11 18 18 H 1.48500 * 109.47102 * 330.00189 * 15 13 11 19 19 C 1.46899 * 110.99742 * 265.15364 * 6 2 1 20 20 C 1.50697 * 109.47335 * 287.11884 * 19 6 2 21 21 C 1.38233 * 120.00309 * 275.51183 * 20 19 6 22 22 C 1.38241 * 120.00059 * 179.76214 * 21 20 19 23 23 C 1.38239 * 119.99646 * 0.51206 * 22 21 20 24 24 C 1.38232 * 119.99733 * 359.74537 * 23 22 21 25 25 C 1.38232 * 120.00776 * 359.97438 * 24 23 22 26 26 H 1.09004 * 109.46914 * 296.47313 * 1 2 3 27 27 H 1.08992 * 109.47575 * 56.48268 * 1 2 3 28 28 H 1.09005 * 109.46764 * 176.47995 * 1 2 3 29 29 H 1.08993 * 109.47592 * 295.87765 * 4 2 1 30 30 H 1.08998 * 109.47444 * 55.88911 * 4 2 1 31 31 H 0.96694 * 114.00343 * 184.98989 * 5 4 2 32 32 H 1.08994 * 109.47427 * 190.17193 * 7 6 2 33 33 H 1.09004 * 109.46697 * 310.17543 * 7 6 2 34 34 H 1.08993 * 109.47477 * 178.90317 * 8 7 6 35 35 H 1.09005 * 109.46746 * 298.90557 * 8 7 6 36 36 H 1.09002 * 109.47102 * 299.99922 * 10 9 8 37 37 H 1.09001 * 109.47083 * 60.00405 * 10 9 8 38 38 H 0.96998 * 119.99976 * 180.02562 * 14 13 11 39 39 H 1.09007 * 109.46948 * 167.12550 * 19 6 2 40 40 H 1.08997 * 109.47422 * 47.12574 * 19 6 2 41 41 H 1.08004 * 120.00194 * 0.02562 * 21 20 19 42 42 H 1.08000 * 119.99996 * 180.23233 * 22 21 20 43 43 H 1.08000 * 119.99615 * 179.72043 * 23 22 21 44 44 H 1.08003 * 119.99254 * 179.97438 * 24 23 22 45 45 H 1.07995 * 120.00448 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 8 3.4657 -0.6379 -1.2988 6 7 2.0197 -0.6926 1.1993 7 6 1.0656 -1.7183 1.6415 8 6 1.0599 -2.8751 0.6401 9 8 2.3743 -3.4273 0.5429 10 6 2.4793 -4.5202 -0.3720 11 6 3.9001 -5.0220 -0.3940 12 1 4.6481 -4.5531 0.2281 13 6 4.2453 -6.0791 -1.2091 14 7 5.4853 -6.5168 -1.2287 15 14 2.9517 -6.8897 -2.2856 16 1 2.9084 -6.2094 -3.6049 17 1 3.2944 -8.3218 -2.4781 18 1 1.6237 -6.7824 -1.6296 19 6 2.3044 0.2619 2.2790 20 6 3.5591 1.0301 1.9526 21 6 4.7963 0.4974 2.2633 22 6 5.9474 1.1999 1.9594 23 6 5.8610 2.4398 1.3543 24 6 4.6236 2.9748 1.0484 25 6 3.4727 2.2698 1.3471 26 1 -0.3633 0.4581 0.9199 27 1 -0.3634 0.5674 -0.8567 28 1 -0.3633 -1.0258 -0.0631 29 1 1.7382 -1.7679 -1.2133 30 1 1.6177 -0.2516 -2.1377 31 1 3.8536 -1.0076 -2.1037 32 1 1.3597 -2.0891 2.6233 33 1 0.0674 -1.2844 1.7010 34 1 0.3664 -3.6450 0.9782 35 1 0.7468 -2.5079 -0.3374 36 1 1.8151 -5.3243 -0.0553 37 1 2.1959 -4.1868 -1.3704 38 1 5.7282 -7.2603 -1.8024 39 1 2.4429 -0.2791 3.2151 40 1 1.4697 0.9555 2.3803 41 1 4.8637 -0.4696 2.7397 42 1 6.9141 0.7820 2.1987 43 1 6.7602 2.9906 1.1209 44 1 4.5561 3.9437 0.5761 45 1 2.5060 2.6880 1.1085 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880375676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:03 Heat of formation + Delta-G solvation = -72.783566 kcal Electronic energy + Delta-G solvation = -24703.391106 eV Core-core repulsion = 21299.767535 eV Total energy + Delta-G solvation = -3403.623571 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.75675 -39.50643 -37.99091 -36.85949 -34.82959 -33.42435 -31.99631 -31.60538 -30.48316 -29.12917 -27.10983 -25.80018 -23.97446 -23.54216 -23.06076 -22.04444 -20.61742 -19.01287 -18.17455 -17.84203 -17.55387 -17.19882 -16.56166 -16.29365 -16.07424 -15.87433 -15.53024 -15.07662 -14.83056 -14.65331 -14.43264 -14.20336 -13.90953 -13.79188 -13.30563 -13.28010 -13.19056 -13.06061 -12.97841 -12.66334 -12.36387 -12.22772 -11.99397 -11.86104 -11.80226 -11.64904 -11.44302 -11.25663 -10.90062 -10.61668 -10.06837 -9.69318 -9.54833 -8.94311 -8.33672 -6.40162 0.54250 0.61732 1.31765 1.35316 1.46135 2.30334 2.78476 2.98573 3.15146 3.31446 3.48653 3.89500 3.99314 4.10664 4.19444 4.21889 4.25334 4.30853 4.33729 4.45373 4.55007 4.55638 4.60712 4.61202 4.65155 4.68465 4.74204 4.75982 4.85355 4.88202 4.99218 5.04342 5.14466 5.21925 5.24757 5.32647 5.49138 5.63873 5.70826 5.82255 6.00500 6.21144 6.31359 6.32325 6.64653 6.89770 7.02775 7.24604 8.83989 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.004720 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.495916 B = 5930.688361 C = 6756.336949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 H 0.084 0.916 4 C 0.077 3.923 5 O -0.574 6.574 6 N -0.530 5.530 7 C 0.056 3.944 8 C 0.046 3.954 9 O -0.381 6.381 10 C 0.183 3.817 11 C -0.533 4.533 12 H 0.024 0.976 13 C 0.013 3.987 14 N -0.945 5.945 15 Si 0.954 3.046 16 H -0.259 1.259 17 H -0.275 1.275 18 H -0.247 1.247 19 C 0.097 3.903 20 C -0.075 4.075 21 C -0.114 4.114 22 C -0.136 4.136 23 C -0.130 4.130 24 C -0.126 4.126 25 C -0.119 4.119 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.054 0.946 31 H 0.376 0.624 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.004 0.996 37 H 0.003 0.997 38 H 0.271 0.729 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.102 0.898 42 H 0.123 0.877 43 H 0.138 0.862 44 H 0.143 0.857 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.358 19.326 2.851 23.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.029 4.029 3 H 0.102 0.898 4 C -0.002 4.002 5 O -0.379 6.379 6 N -0.254 5.254 7 C -0.071 4.071 8 C -0.031 4.031 9 O -0.300 6.300 10 C 0.107 3.893 11 C -0.571 4.571 12 H 0.042 0.958 13 C -0.185 4.185 14 N -0.585 5.585 15 Si 0.776 3.224 16 H -0.184 1.184 17 H -0.200 1.200 18 H -0.171 1.171 19 C -0.029 4.029 20 C -0.076 4.076 21 C -0.132 4.132 22 C -0.154 4.154 23 C -0.148 4.148 24 C -0.144 4.144 25 C -0.137 4.137 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.223 0.777 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.021 0.979 37 H 0.020 0.980 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.120 0.880 42 H 0.141 0.859 43 H 0.156 0.844 44 H 0.161 0.839 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.747 19.306 3.373 22.849 hybrid contribution -0.428 -0.953 -0.913 1.388 sum -12.176 18.353 2.459 22.161 Atomic orbital electron populations 1.22394 0.94153 1.03215 1.03723 1.21790 0.93965 0.97684 0.89503 0.89825 1.22591 0.81400 0.99202 0.96961 1.86546 1.20786 1.84442 1.46086 1.61817 1.45348 1.13460 1.04776 1.22318 0.95935 0.91062 0.97771 1.22931 0.85517 0.95334 0.99342 1.88056 1.29008 1.49266 1.63705 1.20193 0.95182 0.85402 0.88477 1.21101 0.94538 1.16202 1.25220 0.95763 1.25814 0.97991 0.96678 0.97977 1.70049 1.19909 1.27776 1.40741 0.85633 0.79532 0.78015 0.79263 1.18365 1.19973 1.17058 1.21048 0.94129 0.93703 0.94063 1.19830 0.94668 0.94678 0.98419 1.21069 0.93199 0.98700 1.00256 1.21334 0.98399 0.95875 0.99809 1.21371 0.98760 0.95687 0.99026 1.21377 0.92270 1.00748 1.00032 1.21198 0.99288 0.94430 0.98825 0.90467 0.90348 0.91598 0.94372 0.92821 0.77717 0.91117 0.89462 0.93250 0.92640 0.97855 0.97975 0.91984 0.90499 0.91973 0.88012 0.85902 0.84391 0.83891 0.84773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 7.78 71.98 0.56 -2.54 16 2 C 0.08 2.01 2.31 44.92 0.10 2.11 16 3 H 0.08 2.09 5.47 -2.39 -0.01 2.07 16 4 C 0.08 2.32 6.37 71.98 0.46 2.78 16 5 O -0.57 -21.31 13.59 -148.98 -2.03 -23.33 16 6 N -0.53 -15.62 4.09 -875.54 -3.58 -19.20 16 7 C 0.06 1.54 4.88 86.30 0.42 1.96 16 8 C 0.05 1.53 4.88 71.98 0.35 1.89 16 9 O -0.38 -18.17 9.88 -148.98 -1.47 -19.64 16 10 C 0.18 9.41 4.76 71.24 0.34 9.75 16 11 C -0.53 -33.30 9.99 25.60 0.26 -33.04 16 12 H 0.02 1.73 8.06 -2.91 -0.02 1.71 16 13 C 0.01 0.77 5.47 84.65 0.46 1.23 16 14 N -0.94 -60.72 13.96 21.45 0.30 -60.42 16 15 Si 0.95 44.03 27.47 68.60 1.88 45.91 16 16 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.25 -10.52 6.54 99.48 0.65 -9.87 16 19 C 0.10 2.47 5.05 85.56 0.43 2.90 16 20 C -0.08 -2.12 5.05 -19.87 -0.10 -2.22 16 21 C -0.11 -3.63 9.72 22.27 0.22 -3.41 16 22 C -0.14 -3.92 10.05 22.27 0.22 -3.70 16 23 C -0.13 -3.18 10.05 22.27 0.22 -2.96 16 24 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 25 C -0.12 -2.83 8.36 22.27 0.19 -2.65 16 26 H 0.08 1.10 7.65 -2.39 -0.02 1.08 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.21 5.14 -2.38 -0.01 1.19 16 29 H 0.04 1.32 4.44 -2.39 -0.01 1.31 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.38 12.18 9.12 -74.06 -0.68 11.51 16 32 H 0.07 2.00 7.76 -2.39 -0.02 1.99 16 33 H 0.09 1.72 5.56 -2.39 -0.01 1.71 16 34 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.74 4.06 -2.38 -0.01 1.73 16 36 H 0.00 0.19 7.20 -2.39 -0.02 0.17 16 37 H 0.00 0.13 7.57 -2.39 -0.02 0.11 16 38 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 39 H 0.08 1.95 7.71 -2.38 -0.02 1.93 16 40 H 0.06 1.21 7.93 -2.39 -0.02 1.19 16 41 H 0.10 3.53 8.06 -2.91 -0.02 3.50 16 42 H 0.12 3.24 8.06 -2.91 -0.02 3.21 16 43 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 44 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 45 H 0.13 2.50 7.53 -2.91 -0.02 2.48 16 Total: -1.00 -77.94 354.67 -0.28 -78.23 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.25 Total: 28.99 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: 4.36 Total: -30.53 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -3.28 Total: -79.63 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -3.50 Total: -42.98 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.91 kcal Total: -77.94 -0.28 -78.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880375676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.442 kcal (2) G-P(sol) polarization free energy of solvation -77.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds