Wall clock time and date at job start Tue Mar 31 2020 06:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.47514 * 2 1 4 4 C 1.46900 * 110.99735 * 299.48789 * 3 2 1 5 5 C 1.53001 * 109.47206 * 293.79932 * 4 3 2 6 6 O 1.42908 * 109.46781 * 68.38257 * 5 4 3 7 7 C 1.42899 * 113.99760 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.46733 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00610 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99629 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99625 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00068 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.47306 * 89.99904 * 12 10 8 14 14 H 1.48508 * 109.47078 * 209.99876 * 12 10 8 15 15 H 1.48501 * 109.47127 * 329.99800 * 12 10 8 16 16 C 1.46903 * 111.00276 * 175.53291 * 3 2 1 17 17 H 1.08999 * 109.46688 * 57.32291 * 16 3 2 18 18 C 1.53002 * 109.47175 * 177.32200 * 16 3 2 19 19 O 1.42899 * 109.46813 * 63.58823 * 18 16 3 20 20 C 1.50701 * 109.46853 * 297.32409 * 16 3 2 21 21 C 1.38231 * 120.00070 * 319.72674 * 20 16 3 22 22 C 1.38241 * 119.99480 * 179.79000 * 21 20 16 23 23 C 1.38226 * 120.00174 * 0.43907 * 22 21 20 24 24 C 1.38242 * 120.00215 * 359.81392 * 23 22 21 25 25 C 1.38232 * 119.99552 * 359.97438 * 24 23 22 26 26 H 1.09003 * 109.47260 * 298.98595 * 1 2 3 27 27 H 1.09006 * 109.46427 * 58.97925 * 1 2 3 28 28 H 1.08994 * 109.47405 * 178.98012 * 1 2 3 29 29 H 1.09004 * 109.46694 * 120.00073 * 2 1 3 30 30 H 1.08996 * 109.47625 * 239.99333 * 2 1 3 31 31 H 1.09000 * 109.47426 * 53.80240 * 4 3 2 32 32 H 1.08999 * 109.47141 * 173.80140 * 4 3 2 33 33 H 1.08994 * 109.47410 * 188.38105 * 5 4 3 34 34 H 1.08997 * 109.46911 * 308.38606 * 5 4 3 35 35 H 1.08993 * 109.47348 * 300.00096 * 7 6 5 36 36 H 1.09000 * 109.46728 * 60.00320 * 7 6 5 37 37 H 0.97002 * 119.99533 * 180.02562 * 11 10 8 38 38 H 1.09000 * 109.46740 * 183.58394 * 18 16 3 39 39 H 1.08998 * 109.47222 * 303.59067 * 18 16 3 40 40 H 0.96702 * 114.00539 * 180.02562 * 19 18 16 41 41 H 1.07998 * 119.99930 * 359.97438 * 21 20 16 42 42 H 1.07999 * 119.99567 * 180.27460 * 22 21 20 43 43 H 1.08005 * 120.00173 * 179.83191 * 23 22 21 44 44 H 1.08002 * 119.99883 * 180.02562 * 24 23 22 45 45 H 1.08005 * 119.99672 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5588 2.1062 -1.1938 5 6 2.2039 1.4955 -2.4395 6 8 1.6818 0.1822 -2.6510 7 6 2.2214 -0.4803 -3.7964 8 6 1.6045 -1.8495 -3.9217 9 1 0.8737 -2.1809 -3.1988 10 6 1.9738 -2.6796 -4.9588 11 7 1.4350 -3.8743 -5.0685 12 14 3.2393 -2.1074 -6.2080 13 1 4.5981 -2.4900 -5.7470 14 1 2.9636 -2.7461 -7.5201 15 1 3.1622 -0.6313 -6.3501 16 6 3.4843 1.4255 0.1068 17 1 3.9242 0.8586 -0.7137 18 6 3.9608 2.8777 0.0365 19 8 3.4514 3.6009 1.1587 20 6 3.9091 0.8204 1.4200 21 6 3.1854 1.0827 2.5682 22 6 3.5726 0.5241 3.7719 23 6 4.6887 -0.2894 3.8291 24 6 5.4155 -0.5476 2.6819 25 6 5.0257 0.0075 1.4774 26 1 -0.3634 0.4980 0.8989 27 1 -0.3632 0.5297 -0.8808 28 1 -0.3634 -1.0274 -0.0183 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 0.4744 2.0269 -1.2702 32 1 1.8416 3.1560 -1.1158 33 1 1.9822 2.1185 -3.3060 34 1 3.2833 1.4392 -2.2991 35 1 1.9998 0.1018 -4.6908 36 1 3.3013 -0.5776 -3.6845 37 1 1.6951 -4.4585 -5.7979 38 1 5.0504 2.9037 0.0517 39 1 3.5992 3.3345 -0.8847 40 1 3.7140 4.5314 1.1792 41 1 2.3158 1.7217 2.5242 42 1 3.0046 0.7255 4.6682 43 1 4.9928 -0.7237 4.7701 44 1 6.2872 -1.1835 2.7266 45 1 5.5938 -0.1938 0.5811 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880464264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:01 Heat of formation + Delta-G solvation = -54.152659 kcal Electronic energy + Delta-G solvation = -24728.835613 eV Core-core repulsion = 21326.019939 eV Total energy + Delta-G solvation = -3402.815675 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.94629 -38.19451 -36.74675 -35.63962 -32.71054 -32.18677 -30.81019 -30.65890 -28.75102 -27.55963 -26.83171 -23.65004 -22.45577 -22.33719 -21.88884 -21.04332 -19.20018 -17.62928 -17.02325 -16.69018 -16.35359 -15.88422 -15.32157 -14.83703 -14.67594 -14.46480 -14.19272 -13.86931 -13.83228 -13.24963 -13.10075 -12.93965 -12.65868 -12.51751 -12.31300 -12.07022 -11.79335 -11.53367 -11.19702 -11.05590 -10.95541 -10.86107 -10.82613 -10.77593 -10.52493 -10.24722 -9.95137 -9.90457 -9.24187 -8.89584 -8.72952 -8.55678 -8.48478 -7.77878 -6.15940 -4.15191 1.49532 1.61887 3.19694 3.27361 3.27849 3.88152 4.12330 4.29721 4.30748 4.62553 4.75374 5.05856 5.11530 5.15315 5.16053 5.26869 5.31633 5.43431 5.45310 5.47915 5.60196 5.71038 5.75614 5.80089 5.86156 5.92739 5.99754 6.12471 6.15695 6.24505 6.29013 6.50097 6.56593 6.60490 6.68654 6.72161 6.81953 6.88930 6.95943 7.18168 7.40590 7.43924 7.55406 7.64288 7.93153 8.59361 8.95376 9.43277 10.96959 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016649 B = 0.004427 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.397556 B = 6323.613914 C = 6738.191640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.035 3.965 3 N -0.514 5.514 4 C 0.051 3.949 5 C 0.016 3.984 6 O -0.367 6.367 7 C 0.166 3.834 8 C -0.517 4.517 9 H 0.083 0.917 10 C 0.074 3.926 11 N -0.894 5.894 12 Si 0.874 3.126 13 H -0.274 1.274 14 H -0.282 1.282 15 H -0.268 1.268 16 C 0.118 3.882 17 H 0.066 0.934 18 C 0.085 3.915 19 O -0.550 6.550 20 C -0.067 4.067 21 C -0.066 4.066 22 C -0.134 4.134 23 C -0.125 4.125 24 C -0.128 4.128 25 C -0.119 4.119 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.037 0.963 35 H 0.002 0.998 36 H -0.005 1.005 37 H 0.266 0.734 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.369 0.631 41 H 0.134 0.866 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.669 14.157 13.840 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.091 4.091 3 N -0.237 5.237 4 C -0.077 4.077 5 C -0.063 4.063 6 O -0.286 6.286 7 C 0.090 3.910 8 C -0.555 4.555 9 H 0.101 0.899 10 C -0.129 4.129 11 N -0.532 5.532 12 Si 0.701 3.299 13 H -0.200 1.200 14 H -0.207 1.207 15 H -0.192 1.192 16 C 0.009 3.991 17 H 0.083 0.917 18 C 0.007 3.993 19 O -0.354 6.354 20 C -0.067 4.067 21 C -0.084 4.084 22 C -0.152 4.152 23 C -0.143 4.143 24 C -0.146 4.146 25 C -0.137 4.137 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.019 0.981 36 H 0.012 0.988 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.214 0.786 41 H 0.152 0.848 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.054 13.531 14.391 20.660 hybrid contribution 1.617 0.339 -1.925 2.537 sum 7.671 13.871 12.466 20.165 Atomic orbital electron populations 1.21660 0.95218 1.01422 1.01036 1.22401 0.96056 0.88151 1.02506 1.62290 1.07562 1.16158 1.37712 1.22401 1.01698 0.97160 0.86446 1.23183 0.97413 0.87443 0.98227 1.88009 1.66723 1.25792 1.48116 1.20612 0.93046 0.93526 0.83770 1.20857 1.25428 0.96531 1.12717 0.89898 1.24760 0.96183 0.94654 0.97254 1.69873 1.43085 1.08059 1.32172 0.86882 0.82223 0.79377 0.81429 1.20003 1.20738 1.19232 1.20653 0.89961 0.93849 0.94598 0.91683 1.22235 0.96395 0.91678 0.88997 1.86634 1.76932 1.25447 1.46385 1.19569 0.95196 0.97104 0.94858 1.21054 0.99072 0.97257 0.90989 1.21177 0.97355 0.98644 0.98049 1.21082 0.96084 0.99127 0.98044 1.20996 1.00211 1.00617 0.92808 1.21055 0.97091 0.97657 0.97924 0.93602 0.92236 0.92634 0.92136 0.89977 0.89267 0.89980 0.94144 0.94522 0.98074 0.98780 0.92350 0.93728 0.93137 0.78567 0.84838 0.86608 0.86750 0.86542 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.66 37.16 0.36 -1.85 16 2 C 0.04 0.60 4.87 -3.83 -0.02 0.58 16 3 N -0.51 -7.56 3.84 -228.04 -0.88 -8.43 16 4 C 0.05 0.73 5.10 -3.82 -0.02 0.71 16 5 C 0.02 0.27 5.56 37.16 0.21 0.48 16 6 O -0.37 -7.97 7.07 -35.23 -0.25 -8.22 16 7 C 0.17 4.08 4.76 36.00 0.17 4.26 16 8 C -0.52 -15.02 9.99 -34.44 -0.34 -15.36 16 9 H 0.08 2.63 8.06 -52.49 -0.42 2.21 16 10 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 11 N -0.89 -27.31 13.96 55.43 0.77 -26.54 16 12 Si 0.87 21.21 27.47 -169.99 -4.67 16.55 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 16 C 0.12 1.62 1.48 -68.86 -0.10 1.52 16 17 H 0.07 0.99 6.33 -51.93 -0.33 0.67 16 18 C 0.09 0.94 6.12 37.16 0.23 1.17 16 19 O -0.55 -5.88 12.05 -35.23 -0.42 -6.30 16 20 C -0.07 -0.93 3.64 -104.62 -0.38 -1.31 16 21 C -0.07 -0.89 7.70 -39.58 -0.30 -1.20 16 22 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 23 C -0.13 -1.47 10.05 -39.58 -0.40 -1.86 16 24 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 25 C -0.12 -1.59 9.67 -39.58 -0.38 -1.97 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.00 6.23 -51.93 -0.32 0.68 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 1.04 6.61 -51.93 -0.34 0.69 16 30 H 0.08 1.69 5.27 -51.93 -0.27 1.41 16 31 H 0.09 1.33 5.99 -51.93 -0.31 1.02 16 32 H 0.08 0.99 6.27 -51.93 -0.33 0.66 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.04 0.59 5.96 -51.93 -0.31 0.28 16 35 H 0.00 0.04 7.20 -51.93 -0.37 -0.34 16 36 H -0.01 -0.13 7.57 -51.93 -0.39 -0.52 16 37 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.51 5.97 -51.93 -0.31 0.20 16 40 H 0.37 2.29 9.12 45.56 0.42 2.71 16 41 H 0.13 1.91 7.46 -52.49 -0.39 1.52 16 42 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.11 1.07 8.06 -52.48 -0.42 0.65 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.12 1.45 8.04 -52.48 -0.42 1.03 16 LS Contribution 350.41 15.07 5.28 5.28 Total: -1.00 -31.88 350.41 -8.28 -40.16 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.24 Total: 4.30 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -1.88 Total: -16.80 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: -0.10 Total: -34.97 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.67 Total: -14.53 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.88 -8.28 -40.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880464264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.988 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds