Wall clock time and date at job start Tue Mar 31 2020 06:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.47514 * 2 1 4 4 C 1.46900 * 110.99735 * 299.48789 * 3 2 1 5 5 C 1.53001 * 109.47206 * 293.79932 * 4 3 2 6 6 O 1.42908 * 109.46781 * 68.38257 * 5 4 3 7 7 C 1.42899 * 113.99760 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.46733 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00610 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99629 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99625 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00068 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.47306 * 89.99904 * 12 10 8 14 14 H 1.48508 * 109.47078 * 209.99876 * 12 10 8 15 15 H 1.48501 * 109.47127 * 329.99800 * 12 10 8 16 16 C 1.46903 * 111.00276 * 175.53291 * 3 2 1 17 17 H 1.08999 * 109.46688 * 57.32291 * 16 3 2 18 18 C 1.53002 * 109.47175 * 177.32200 * 16 3 2 19 19 O 1.42899 * 109.46813 * 63.58823 * 18 16 3 20 20 C 1.50701 * 109.46853 * 297.32409 * 16 3 2 21 21 C 1.38231 * 120.00070 * 319.72674 * 20 16 3 22 22 C 1.38241 * 119.99480 * 179.79000 * 21 20 16 23 23 C 1.38226 * 120.00174 * 0.43907 * 22 21 20 24 24 C 1.38242 * 120.00215 * 359.81392 * 23 22 21 25 25 C 1.38232 * 119.99552 * 359.97438 * 24 23 22 26 26 H 1.09003 * 109.47260 * 298.98595 * 1 2 3 27 27 H 1.09006 * 109.46427 * 58.97925 * 1 2 3 28 28 H 1.08994 * 109.47405 * 178.98012 * 1 2 3 29 29 H 1.09004 * 109.46694 * 120.00073 * 2 1 3 30 30 H 1.08996 * 109.47625 * 239.99333 * 2 1 3 31 31 H 1.09000 * 109.47426 * 53.80240 * 4 3 2 32 32 H 1.08999 * 109.47141 * 173.80140 * 4 3 2 33 33 H 1.08994 * 109.47410 * 188.38105 * 5 4 3 34 34 H 1.08997 * 109.46911 * 308.38606 * 5 4 3 35 35 H 1.08993 * 109.47348 * 300.00096 * 7 6 5 36 36 H 1.09000 * 109.46728 * 60.00320 * 7 6 5 37 37 H 0.97002 * 119.99533 * 180.02562 * 11 10 8 38 38 H 1.09000 * 109.46740 * 183.58394 * 18 16 3 39 39 H 1.08998 * 109.47222 * 303.59067 * 18 16 3 40 40 H 0.96702 * 114.00539 * 180.02562 * 19 18 16 41 41 H 1.07998 * 119.99930 * 359.97438 * 21 20 16 42 42 H 1.07999 * 119.99567 * 180.27460 * 22 21 20 43 43 H 1.08005 * 120.00173 * 179.83191 * 23 22 21 44 44 H 1.08002 * 119.99883 * 180.02562 * 24 23 22 45 45 H 1.08005 * 119.99672 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5588 2.1062 -1.1938 5 6 2.2039 1.4955 -2.4395 6 8 1.6818 0.1822 -2.6510 7 6 2.2214 -0.4803 -3.7964 8 6 1.6045 -1.8495 -3.9217 9 1 0.8737 -2.1809 -3.1988 10 6 1.9738 -2.6796 -4.9588 11 7 1.4350 -3.8743 -5.0685 12 14 3.2393 -2.1074 -6.2080 13 1 4.5981 -2.4900 -5.7470 14 1 2.9636 -2.7461 -7.5201 15 1 3.1622 -0.6313 -6.3501 16 6 3.4843 1.4255 0.1068 17 1 3.9242 0.8586 -0.7137 18 6 3.9608 2.8777 0.0365 19 8 3.4514 3.6009 1.1587 20 6 3.9091 0.8204 1.4200 21 6 3.1854 1.0827 2.5682 22 6 3.5726 0.5241 3.7719 23 6 4.6887 -0.2894 3.8291 24 6 5.4155 -0.5476 2.6819 25 6 5.0257 0.0075 1.4774 26 1 -0.3634 0.4980 0.8989 27 1 -0.3632 0.5297 -0.8808 28 1 -0.3634 -1.0274 -0.0183 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 0.4744 2.0269 -1.2702 32 1 1.8416 3.1560 -1.1158 33 1 1.9822 2.1185 -3.3060 34 1 3.2833 1.4392 -2.2991 35 1 1.9998 0.1018 -4.6908 36 1 3.3013 -0.5776 -3.6845 37 1 1.6951 -4.4585 -5.7979 38 1 5.0504 2.9037 0.0517 39 1 3.5992 3.3345 -0.8847 40 1 3.7140 4.5314 1.1792 41 1 2.3158 1.7217 2.5242 42 1 3.0046 0.7255 4.6682 43 1 4.9928 -0.7237 4.7701 44 1 6.2872 -1.1835 2.7266 45 1 5.5938 -0.1938 0.5811 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880464264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:00 Heat of formation + Delta-G solvation = -76.513540 kcal Electronic energy + Delta-G solvation = -24729.805254 eV Core-core repulsion = 21326.019939 eV Total energy + Delta-G solvation = -3403.785315 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.03387 -39.38760 -37.97266 -36.81718 -34.85438 -33.28175 -32.12832 -31.64989 -30.36115 -29.01289 -28.02842 -24.86585 -23.98369 -23.52606 -23.33675 -22.18349 -20.39926 -19.01388 -18.51831 -17.95301 -17.66260 -17.06901 -16.83078 -16.26238 -15.95434 -15.62916 -15.47428 -15.28069 -14.89054 -14.75728 -14.34627 -14.29051 -14.04552 -13.74486 -13.38441 -13.32527 -13.15271 -13.04899 -12.67831 -12.65464 -12.45046 -12.36821 -12.04475 -11.87803 -11.82310 -11.60882 -11.50992 -11.35175 -10.93077 -10.75577 -10.29720 -9.70400 -9.48737 -9.06891 -8.38682 -6.45907 0.52601 0.64173 1.29440 1.31977 1.42539 2.26131 2.79486 2.93968 3.02310 3.17132 3.44605 3.79010 4.03143 4.13425 4.20681 4.25155 4.25705 4.33096 4.39946 4.44645 4.50495 4.51169 4.56321 4.59529 4.68396 4.73543 4.78326 4.84344 4.87986 4.94809 5.05351 5.17865 5.18788 5.30876 5.34718 5.39056 5.49088 5.64980 5.72968 5.82553 5.91783 6.16563 6.21160 6.27993 6.58150 6.71633 7.05856 7.18298 8.78244 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016649 B = 0.004427 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.397556 B = 6323.613914 C = 6738.191640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.046 3.954 3 N -0.505 5.505 4 C 0.056 3.944 5 C 0.010 3.990 6 O -0.385 6.385 7 C 0.178 3.822 8 C -0.537 4.537 9 H 0.032 0.968 10 C 0.014 3.986 11 N -0.941 5.941 12 Si 0.951 3.049 13 H -0.262 1.262 14 H -0.274 1.274 15 H -0.247 1.247 16 C 0.114 3.886 17 H 0.046 0.954 18 C 0.092 3.908 19 O -0.564 6.564 20 C -0.079 4.079 21 C -0.077 4.077 22 C -0.139 4.139 23 C -0.128 4.128 24 C -0.134 4.134 25 C -0.138 4.138 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.041 0.959 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.009 0.991 36 H 0.003 0.997 37 H 0.272 0.728 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.390 0.610 41 H 0.125 0.875 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.444 16.412 14.075 23.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.081 4.081 3 N -0.228 5.228 4 C -0.072 4.072 5 C -0.069 4.069 6 O -0.304 6.304 7 C 0.102 3.898 8 C -0.575 4.575 9 H 0.050 0.950 10 C -0.184 4.184 11 N -0.581 5.581 12 Si 0.773 3.227 13 H -0.187 1.187 14 H -0.199 1.199 15 H -0.170 1.170 16 C 0.006 3.994 17 H 0.064 0.936 18 C 0.014 3.986 19 O -0.371 6.371 20 C -0.079 4.079 21 C -0.095 4.095 22 C -0.156 4.156 23 C -0.146 4.146 24 C -0.151 4.151 25 C -0.156 4.156 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.133 0.867 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.026 0.974 36 H 0.020 0.980 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.238 0.762 41 H 0.143 0.857 42 H 0.153 0.847 43 H 0.158 0.842 44 H 0.153 0.847 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.829 15.827 14.648 22.943 hybrid contribution 1.009 -0.371 -1.852 2.142 sum 8.839 15.456 12.796 21.926 Atomic orbital electron populations 1.21590 0.94859 1.00709 1.01527 1.22164 0.96295 0.89370 1.00296 1.62299 1.08548 1.14278 1.37707 1.22484 1.01190 0.98443 0.85048 1.23494 0.98192 0.85237 0.99946 1.88020 1.67189 1.28347 1.46857 1.20277 0.92882 0.91527 0.85124 1.21105 1.25048 0.99286 1.12087 0.94994 1.25788 0.98550 0.94452 0.99571 1.70033 1.44988 1.09677 1.33401 0.85671 0.78995 0.79988 0.78063 1.18662 1.19890 1.17040 1.20721 0.88829 0.95848 0.94032 0.93588 1.22116 0.96987 0.89895 0.89596 1.86583 1.77151 1.27186 1.46206 1.19652 0.95643 0.97627 0.95016 1.21031 0.99031 0.97871 0.91585 1.21462 0.97659 0.98230 0.98296 1.21414 0.95584 0.98620 0.98974 1.21300 1.00841 1.00436 0.92565 1.21231 0.97462 0.98253 0.98700 0.91680 0.93017 0.93972 0.92696 0.93790 0.89913 0.86720 0.92657 0.93547 0.97377 0.97967 0.91899 0.92587 0.91920 0.76169 0.85732 0.84659 0.84177 0.84657 0.86459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 9.66 71.98 0.70 -3.63 16 2 C 0.05 1.62 4.87 86.30 0.42 2.04 16 3 N -0.51 -14.56 3.84 -875.38 -3.36 -17.93 16 4 C 0.06 1.52 5.10 86.30 0.44 1.96 16 5 C 0.01 0.31 5.56 71.98 0.40 0.71 16 6 O -0.38 -16.93 7.07 -148.98 -1.05 -17.98 16 7 C 0.18 8.76 4.76 71.24 0.34 9.10 16 8 C -0.54 -32.34 9.99 25.60 0.26 -32.09 16 9 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 10 C 0.01 0.85 5.47 84.66 0.46 1.31 16 11 N -0.94 -59.24 13.96 21.45 0.30 -58.94 16 12 Si 0.95 43.34 27.47 68.60 1.88 45.22 16 13 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 15 H -0.25 -10.36 6.54 99.48 0.65 -9.71 16 16 C 0.11 3.06 1.48 44.17 0.07 3.12 16 17 H 0.05 1.41 6.33 -2.39 -0.02 1.39 16 18 C 0.09 1.83 6.12 71.98 0.44 2.27 16 19 O -0.56 -10.68 12.05 -148.98 -1.80 -12.48 16 20 C -0.08 -2.16 3.64 -19.87 -0.07 -2.23 16 21 C -0.08 -2.03 7.70 22.27 0.17 -1.86 16 22 C -0.14 -3.18 10.05 22.27 0.22 -2.96 16 23 C -0.13 -2.75 10.05 22.27 0.22 -2.53 16 24 C -0.13 -3.08 10.05 22.27 0.22 -2.86 16 25 C -0.14 -3.63 9.67 22.27 0.22 -3.42 16 26 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.05 1.79 6.23 -2.38 -0.01 1.77 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 1.95 6.61 -2.38 -0.02 1.94 16 30 H 0.04 1.91 5.27 -2.39 -0.01 1.90 16 31 H 0.08 2.37 5.99 -2.39 -0.01 2.36 16 32 H 0.11 2.40 6.27 -2.39 -0.01 2.38 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.41 5.96 -2.39 -0.01 1.40 16 35 H 0.01 0.41 7.20 -2.39 -0.02 0.39 16 36 H 0.00 0.13 7.57 -2.39 -0.02 0.11 16 37 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 1.07 5.97 -2.39 -0.01 1.06 16 40 H 0.39 3.70 9.12 -74.06 -0.68 3.02 16 41 H 0.12 3.47 7.46 -2.91 -0.02 3.45 16 42 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 43 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 44 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 45 H 0.12 2.94 8.04 -2.91 -0.02 2.91 16 Total: -1.00 -71.37 350.41 0.73 -70.64 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.25 Total: 22.52 kcal Atomic # 6 Polarization: -35.57 SS G_CDS: 4.51 Total: -31.06 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -3.06 Total: -76.86 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -2.85 Total: -30.46 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.22 kcal Total: -71.37 0.73 -70.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880464264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.872 kcal (2) G-P(sol) polarization free energy of solvation -71.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds