Wall clock time and date at job start Tue Mar 31 2020 06:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35890 * 117.00561 * 2 1 4 4 C 1.38729 * 120.06046 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94906 * 180.29691 * 4 3 2 6 6 C 1.38268 * 120.05076 * 359.42784 * 5 4 3 7 7 C 1.50698 * 119.94203 * 180.29706 * 6 5 4 8 8 N 1.46902 * 109.47149 * 270.29827 * 7 6 5 9 9 C 1.46900 * 110.99699 * 289.14046 * 8 7 6 10 10 C 1.52998 * 109.47115 * 291.69485 * 9 8 7 11 11 O 1.42893 * 109.46942 * 69.15348 * 10 9 8 12 12 C 1.46906 * 110.99967 * 165.18799 * 8 7 6 13 13 C 1.52993 * 109.47110 * 185.60579 * 12 8 7 14 14 C 1.52999 * 109.47405 * 177.41618 * 13 12 8 15 15 C 1.50695 * 109.47435 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00195 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00025 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00015 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00040 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46724 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47343 * 119.99901 * 19 17 15 22 22 H 1.48503 * 109.46918 * 239.99855 * 19 17 15 23 23 C 1.38264 * 120.11020 * 0.59473 * 6 5 4 24 24 C 1.38141 * 120.05737 * 359.68483 * 23 6 5 25 25 H 1.09005 * 109.46697 * 300.00052 * 1 2 3 26 26 H 1.09001 * 109.46774 * 59.99811 * 1 2 3 27 27 H 1.08991 * 109.47456 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.02623 * 0.02562 * 4 3 2 29 29 H 1.07997 * 119.97199 * 179.69921 * 5 4 3 30 30 H 1.09001 * 109.47356 * 30.30215 * 7 6 5 31 31 H 1.09000 * 109.47061 * 150.29916 * 7 6 5 32 32 H 1.08996 * 109.47297 * 51.70111 * 9 8 7 33 33 H 1.09005 * 109.46838 * 171.69955 * 9 8 7 34 34 H 1.09009 * 109.46862 * 189.14799 * 10 9 8 35 35 H 1.08992 * 109.47698 * 309.14542 * 10 9 8 36 36 H 0.96697 * 114.00243 * 184.69006 * 11 10 9 37 37 H 1.09005 * 109.46945 * 305.60897 * 12 8 7 38 38 H 1.09005 * 109.46994 * 65.60477 * 12 8 7 39 39 H 1.08993 * 109.47457 * 297.41774 * 13 12 8 40 40 H 1.09002 * 109.46970 * 57.41483 * 13 12 8 41 41 H 1.09005 * 109.46644 * 300.00668 * 14 13 12 42 42 H 1.09002 * 109.47167 * 59.99985 * 14 13 12 43 43 H 0.97005 * 119.99968 * 180.02562 * 18 17 15 44 44 H 1.08004 * 119.96824 * 179.70014 * 23 6 5 45 45 H 1.08006 * 120.02463 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2107 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0563 2.5167 0.0067 6 6 3.3022 3.6756 0.0005 7 6 3.9864 5.0183 0.0005 8 7 4.2087 5.4546 1.3855 9 6 2.9415 5.8215 2.0316 10 6 2.3891 7.0935 1.3853 11 8 1.9654 6.8047 0.0516 12 6 5.1684 6.5655 1.4399 13 6 5.4802 6.8990 2.9001 14 6 6.5280 8.0125 2.9565 15 6 6.8356 8.3406 4.3948 16 1 6.3342 7.8079 5.1893 17 6 7.7571 9.3208 4.6964 18 7 8.3680 9.9691 3.7289 19 14 8.1389 9.7270 6.4793 20 1 7.3243 8.8614 7.3695 21 1 9.5810 9.4909 6.7429 22 1 7.8143 11.1520 6.7428 23 6 1.9214 3.6046 0.0004 24 6 1.2917 2.3750 0.0000 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 4.0209 0.3797 0.0005 29 1 5.1347 2.5746 0.0121 30 1 4.9444 4.9379 -0.5134 31 1 3.3585 5.7461 -0.5134 32 1 2.2234 5.0106 1.9097 33 1 3.1130 5.9984 3.0934 34 1 1.5407 7.4568 1.9654 35 1 3.1669 7.8567 1.3623 36 1 1.6699 7.5807 -0.4440 37 1 6.0871 6.2774 0.9288 38 1 4.7396 7.4403 0.9509 39 1 4.5700 7.2311 3.3993 40 1 5.8661 6.0112 3.4011 41 1 7.4383 7.6803 2.4572 42 1 6.1421 8.9003 2.4554 43 1 9.0166 10.6585 3.9411 44 1 1.3345 4.5113 0.0004 45 1 0.2131 2.3202 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880569304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:59 Heat of formation + Delta-G solvation = -63.319353 kcal Electronic energy + Delta-G solvation = -23465.846382 eV Core-core repulsion = 20062.633210 eV Total energy + Delta-G solvation = -3403.213172 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.23664 -38.92191 -37.27025 -35.76275 -33.64352 -31.80307 -31.04697 -30.59908 -28.75709 -27.70741 -26.37296 -24.39161 -23.41529 -22.55136 -21.55270 -20.36642 -19.37028 -18.18480 -17.60056 -16.48048 -16.31392 -16.07503 -15.87010 -15.46303 -15.04985 -14.40326 -14.30970 -13.88311 -13.83784 -13.62368 -13.47535 -13.01547 -12.64253 -12.43821 -12.19194 -12.06408 -11.77752 -11.73583 -11.40225 -11.21733 -11.08546 -10.99014 -10.85602 -10.66422 -10.52430 -10.41423 -9.83190 -9.57094 -9.32198 -9.03553 -8.93610 -8.33814 -8.13689 -7.77644 -5.99017 -4.00838 1.39436 1.45271 3.15783 3.31487 3.39057 3.43521 3.72795 4.17783 4.44696 4.52754 4.74042 4.85312 4.91301 4.96676 5.05542 5.19845 5.21691 5.33810 5.37005 5.40728 5.43658 5.50142 5.58750 5.70952 5.77819 5.83126 6.04731 6.10623 6.16558 6.23874 6.34892 6.35535 6.40619 6.72109 6.79454 6.81363 6.83442 7.14790 7.33114 7.43856 7.48164 7.54864 7.70072 7.84907 8.01778 8.45362 9.06753 9.63237 11.12410 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025124 B = 0.002809 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.205053 B = 9965.257335 C =10348.727298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.116 3.884 4 C -0.156 4.156 5 C -0.064 4.064 6 C -0.098 4.098 7 C 0.074 3.926 8 N -0.528 5.528 9 C 0.051 3.949 10 C 0.031 3.969 11 O -0.565 6.565 12 C 0.052 3.948 13 C -0.106 4.106 14 C 0.022 3.978 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.070 4.070 24 C -0.213 4.213 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.370 0.630 37 H 0.069 0.931 38 H 0.032 0.968 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.016 0.984 42 H 0.012 0.988 43 H 0.259 0.741 44 H 0.132 0.868 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.938 -14.011 -10.483 24.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.071 3.929 4 C -0.174 4.174 5 C -0.083 4.083 6 C -0.098 4.098 7 C -0.053 4.053 8 N -0.250 5.250 9 C -0.078 4.078 10 C -0.048 4.048 11 O -0.372 6.372 12 C -0.075 4.075 13 C -0.144 4.144 14 C -0.015 4.015 15 C -0.555 4.555 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.089 4.089 24 C -0.232 4.232 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.217 0.783 37 H 0.088 0.912 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.034 0.966 42 H 0.030 0.970 43 H 0.069 0.931 44 H 0.150 0.850 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.349 -15.070 -10.065 24.407 hybrid contribution -0.465 1.736 0.482 1.861 sum -16.814 -13.334 -9.583 23.502 Atomic orbital electron populations 1.23001 0.78758 1.03583 1.01270 1.86041 1.21104 1.27362 1.89073 1.19019 0.92398 0.83924 0.97530 1.20389 0.91238 0.98624 1.07177 1.20916 1.00001 0.90886 0.96462 1.19766 0.93244 0.95191 1.01637 1.21436 0.99942 0.93474 0.90431 1.62258 1.09875 1.36799 1.16102 1.22372 0.91353 0.95011 0.99019 1.23125 0.98421 1.00238 0.83025 1.86488 1.86621 1.37692 1.26357 1.22371 0.94606 0.90808 0.99732 1.21665 0.99886 1.00249 0.92566 1.19068 0.93190 0.92368 0.96905 1.21291 1.22712 1.18986 0.92526 0.92659 1.25031 0.96131 0.96262 0.97130 1.69977 1.27614 1.24608 1.31419 0.86557 0.78150 0.78083 0.85347 1.19731 1.21008 1.21096 1.21063 0.94398 0.97032 0.96389 1.21186 0.99614 0.92501 1.09902 0.92767 0.92834 0.88523 0.85598 0.85388 0.91223 0.89722 0.90341 0.88940 0.93693 0.92111 0.78292 0.91221 0.95033 0.93672 0.92513 0.96600 0.96969 0.93118 0.84974 0.86023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.66 10.50 -19.39 -0.20 -3.86 16 3 C 0.12 1.43 6.69 -39.22 -0.26 1.16 16 4 C -0.16 -1.92 9.99 -39.43 -0.39 -2.32 16 5 C -0.06 -0.81 9.70 -39.60 -0.38 -1.20 16 6 C -0.10 -1.28 5.04 -104.60 -0.53 -1.81 16 7 C 0.07 1.00 4.89 -4.98 -0.02 0.98 16 8 N -0.53 -8.01 4.70 -236.07 -1.11 -9.12 16 9 C 0.05 0.70 5.30 -3.82 -0.02 0.68 16 10 C 0.03 0.37 6.85 37.16 0.25 0.63 16 11 O -0.57 -6.00 9.07 -35.23 -0.32 -6.32 16 12 C 0.05 0.89 4.53 -3.82 -0.02 0.87 16 13 C -0.11 -2.17 4.89 -26.73 -0.13 -2.30 16 14 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 15 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 19 Si 0.89 21.76 29.54 -169.99 -5.02 16.73 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 C -0.07 -0.86 8.04 -39.61 -0.32 -1.18 16 24 C -0.21 -2.45 9.04 -39.43 -0.36 -2.81 16 25 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 26 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 30 H 0.07 0.94 7.84 -51.93 -0.41 0.53 16 31 H 0.09 1.13 4.68 -51.93 -0.24 0.89 16 32 H 0.08 1.06 5.71 -51.93 -0.30 0.76 16 33 H 0.09 1.34 6.64 -51.93 -0.34 1.00 16 34 H 0.04 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.06 0.83 5.81 -51.93 -0.30 0.53 16 36 H 0.37 2.55 9.12 45.56 0.42 2.96 16 37 H 0.07 1.23 7.97 -51.93 -0.41 0.81 16 38 H 0.03 0.54 5.94 -51.93 -0.31 0.23 16 39 H 0.04 0.90 6.67 -51.93 -0.35 0.55 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.13 1.56 6.33 -52.48 -0.33 1.23 16 45 H 0.12 1.13 6.30 -52.48 -0.33 0.80 16 LS Contribution 353.93 15.07 5.33 5.33 Total: -1.00 -32.00 353.93 -8.53 -40.53 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.21 Total: 2.13 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -1.74 Total: -19.14 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.37 Total: -35.40 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.52 Total: -10.18 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.00 -8.53 -40.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880569304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.793 kcal (2) G-P(sol) polarization free energy of solvation -31.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds