Wall clock time and date at job start Tue Mar 31 2020 06:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35890 * 117.00561 * 2 1 4 4 C 1.38729 * 120.06046 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94906 * 180.29691 * 4 3 2 6 6 C 1.38268 * 120.05076 * 359.42784 * 5 4 3 7 7 C 1.50698 * 119.94203 * 180.29706 * 6 5 4 8 8 N 1.46902 * 109.47149 * 270.29827 * 7 6 5 9 9 C 1.46900 * 110.99699 * 289.14046 * 8 7 6 10 10 C 1.52998 * 109.47115 * 291.69485 * 9 8 7 11 11 O 1.42893 * 109.46942 * 69.15348 * 10 9 8 12 12 C 1.46906 * 110.99967 * 165.18799 * 8 7 6 13 13 C 1.52993 * 109.47110 * 185.60579 * 12 8 7 14 14 C 1.52999 * 109.47405 * 177.41618 * 13 12 8 15 15 C 1.50695 * 109.47435 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00195 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00025 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00015 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00040 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46724 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47343 * 119.99901 * 19 17 15 22 22 H 1.48503 * 109.46918 * 239.99855 * 19 17 15 23 23 C 1.38264 * 120.11020 * 0.59473 * 6 5 4 24 24 C 1.38141 * 120.05737 * 359.68483 * 23 6 5 25 25 H 1.09005 * 109.46697 * 300.00052 * 1 2 3 26 26 H 1.09001 * 109.46774 * 59.99811 * 1 2 3 27 27 H 1.08991 * 109.47456 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.02623 * 0.02562 * 4 3 2 29 29 H 1.07997 * 119.97199 * 179.69921 * 5 4 3 30 30 H 1.09001 * 109.47356 * 30.30215 * 7 6 5 31 31 H 1.09000 * 109.47061 * 150.29916 * 7 6 5 32 32 H 1.08996 * 109.47297 * 51.70111 * 9 8 7 33 33 H 1.09005 * 109.46838 * 171.69955 * 9 8 7 34 34 H 1.09009 * 109.46862 * 189.14799 * 10 9 8 35 35 H 1.08992 * 109.47698 * 309.14542 * 10 9 8 36 36 H 0.96697 * 114.00243 * 184.69006 * 11 10 9 37 37 H 1.09005 * 109.46945 * 305.60897 * 12 8 7 38 38 H 1.09005 * 109.46994 * 65.60477 * 12 8 7 39 39 H 1.08993 * 109.47457 * 297.41774 * 13 12 8 40 40 H 1.09002 * 109.46970 * 57.41483 * 13 12 8 41 41 H 1.09005 * 109.46644 * 300.00668 * 14 13 12 42 42 H 1.09002 * 109.47167 * 59.99985 * 14 13 12 43 43 H 0.97005 * 119.99968 * 180.02562 * 18 17 15 44 44 H 1.08004 * 119.96824 * 179.70014 * 23 6 5 45 45 H 1.08006 * 120.02463 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2107 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0563 2.5167 0.0067 6 6 3.3022 3.6756 0.0005 7 6 3.9864 5.0183 0.0005 8 7 4.2087 5.4546 1.3855 9 6 2.9415 5.8215 2.0316 10 6 2.3891 7.0935 1.3853 11 8 1.9654 6.8047 0.0516 12 6 5.1684 6.5655 1.4399 13 6 5.4802 6.8990 2.9001 14 6 6.5280 8.0125 2.9565 15 6 6.8356 8.3406 4.3948 16 1 6.3342 7.8079 5.1893 17 6 7.7571 9.3208 4.6964 18 7 8.3680 9.9691 3.7289 19 14 8.1389 9.7270 6.4793 20 1 7.3243 8.8614 7.3695 21 1 9.5810 9.4909 6.7429 22 1 7.8143 11.1520 6.7428 23 6 1.9214 3.6046 0.0004 24 6 1.2917 2.3750 0.0000 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 4.0209 0.3797 0.0005 29 1 5.1347 2.5746 0.0121 30 1 4.9444 4.9379 -0.5134 31 1 3.3585 5.7461 -0.5134 32 1 2.2234 5.0106 1.9097 33 1 3.1130 5.9984 3.0934 34 1 1.5407 7.4568 1.9654 35 1 3.1669 7.8567 1.3623 36 1 1.6699 7.5807 -0.4440 37 1 6.0871 6.2774 0.9288 38 1 4.7396 7.4403 0.9509 39 1 4.5700 7.2311 3.3993 40 1 5.8661 6.0112 3.4011 41 1 7.4383 7.6803 2.4572 42 1 6.1421 8.9003 2.4554 43 1 9.0166 10.6585 3.9411 44 1 1.3345 4.5113 0.0004 45 1 0.2131 2.3202 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880569304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:58 Heat of formation + Delta-G solvation = -84.886274 kcal Electronic energy + Delta-G solvation = -23466.781594 eV Core-core repulsion = 20062.633210 eV Total energy + Delta-G solvation = -3404.148384 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.13116 -39.96585 -38.17605 -36.87250 -35.52767 -33.47201 -31.97725 -31.80879 -29.88294 -28.70373 -27.78803 -25.59643 -24.90881 -23.46493 -22.95611 -21.64401 -20.73407 -19.01174 -18.56423 -18.36946 -17.56880 -16.99460 -16.65878 -16.57379 -16.47592 -16.04675 -15.33436 -15.27544 -14.71600 -14.67518 -14.48146 -14.34535 -13.95137 -13.74469 -13.38454 -13.27020 -13.15719 -12.83725 -12.73154 -12.69361 -12.47471 -12.30910 -12.19858 -11.99668 -11.84439 -11.56483 -11.44984 -11.33305 -11.04253 -10.71493 -10.54358 -9.86164 -9.13382 -8.87392 -8.19382 -6.29863 0.47263 0.50597 1.39859 1.40638 1.53853 2.41300 2.43005 2.74274 3.13838 3.22955 3.45394 3.91829 3.98908 4.05916 4.14519 4.19796 4.31996 4.34903 4.41105 4.42157 4.50569 4.54590 4.57390 4.62630 4.74301 4.77012 4.82056 4.90980 4.99422 5.05059 5.14942 5.19797 5.21602 5.30639 5.40820 5.47386 5.54793 5.77149 5.83619 5.87959 5.90249 6.18515 6.26735 6.31745 6.50972 6.86126 6.87376 7.39288 8.92596 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025124 B = 0.002809 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.205053 B = 9965.257335 C =10348.727298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.110 3.890 4 C -0.168 4.168 5 C -0.074 4.074 6 C -0.111 4.111 7 C 0.078 3.922 8 N -0.535 5.535 9 C 0.049 3.951 10 C 0.041 3.959 11 O -0.569 6.569 12 C 0.065 3.935 13 C -0.088 4.088 14 C 0.027 3.973 15 C -0.539 4.539 16 H 0.058 0.942 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.963 3.037 20 H -0.263 1.263 21 H -0.279 1.279 22 H -0.277 1.277 23 C -0.072 4.072 24 C -0.213 4.213 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.118 0.882 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.043 0.957 36 H 0.389 0.611 37 H 0.062 0.938 38 H 0.035 0.965 39 H 0.052 0.948 40 H 0.047 0.953 41 H -0.011 1.011 42 H -0.008 1.008 43 H 0.263 0.737 44 H 0.138 0.862 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.729 -14.653 -9.998 25.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.065 3.935 4 C -0.186 4.186 5 C -0.092 4.092 6 C -0.112 4.112 7 C -0.048 4.048 8 N -0.258 5.258 9 C -0.080 4.080 10 C -0.038 4.038 11 O -0.378 6.378 12 C -0.062 4.062 13 C -0.126 4.126 14 C -0.010 4.010 15 C -0.578 4.578 16 H 0.076 0.924 17 C -0.199 4.199 18 N -0.574 5.574 19 Si 0.788 3.212 20 H -0.187 1.187 21 H -0.205 1.205 22 H -0.203 1.203 23 C -0.090 4.090 24 C -0.231 4.231 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.136 0.864 28 H 0.152 0.848 29 H 0.149 0.851 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.239 0.761 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.008 0.992 42 H 0.010 0.990 43 H 0.072 0.928 44 H 0.156 0.844 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.168 -15.719 -9.594 25.869 hybrid contribution 0.020 1.873 0.269 1.892 sum -18.147 -13.846 -9.325 24.658 Atomic orbital electron populations 1.23309 0.76653 1.05426 1.02112 1.86026 1.23334 1.26965 1.88880 1.19182 0.92558 0.84643 0.97123 1.20569 0.91861 0.98826 1.07362 1.21020 1.00315 0.91124 0.96749 1.19763 0.93797 0.94783 1.02835 1.21405 1.00021 0.94045 0.89304 1.62187 1.10407 1.35701 1.17457 1.22376 0.90866 0.96174 0.98538 1.22878 0.98430 0.98534 0.83990 1.86419 1.86572 1.39032 1.25755 1.22070 0.95158 0.91851 0.97137 1.21390 0.98370 0.97840 0.95014 1.18955 0.93470 0.93202 0.95388 1.21713 1.23023 1.19281 0.93735 0.92383 1.25968 0.95871 0.96057 1.01973 1.70102 1.28214 1.25196 1.33873 0.85422 0.78076 0.78135 0.79567 1.18669 1.20452 1.20265 1.21141 0.94031 0.97628 0.96204 1.21419 1.00827 0.91861 1.09021 0.92048 0.91768 0.86357 0.84785 0.85131 0.91587 0.89224 0.89688 0.89904 0.92046 0.93928 0.76121 0.91987 0.94697 0.92926 0.93382 0.99230 0.98970 0.92809 0.84419 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.11 10.50 -92.31 -0.97 -8.08 16 3 C 0.11 2.55 6.69 22.51 0.15 2.70 16 4 C -0.17 -4.03 9.99 22.37 0.22 -3.81 16 5 C -0.07 -1.84 9.70 22.25 0.22 -1.62 16 6 C -0.11 -2.81 5.04 -19.85 -0.10 -2.91 16 7 C 0.08 2.08 4.89 85.56 0.42 2.50 16 8 N -0.53 -16.01 4.70 -900.78 -4.23 -20.24 16 9 C 0.05 1.29 5.30 86.30 0.46 1.75 16 10 C 0.04 0.93 6.85 71.98 0.49 1.42 16 11 O -0.57 -10.92 9.07 -148.98 -1.35 -12.28 16 12 C 0.07 2.27 4.53 86.30 0.39 2.66 16 13 C -0.09 -3.67 4.89 30.59 0.15 -3.52 16 14 C 0.03 1.46 4.97 29.85 0.15 1.60 16 15 C -0.54 -31.02 9.11 25.60 0.23 -30.79 16 16 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 17 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 18 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 19 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 20 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 23 C -0.07 -1.64 8.04 22.25 0.18 -1.46 16 24 C -0.21 -4.46 9.04 22.36 0.20 -4.26 16 25 H 0.06 0.66 7.66 -2.38 -0.02 0.64 16 26 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 27 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.13 2.87 8.06 -2.91 -0.02 2.84 16 29 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 30 H 0.07 1.77 7.84 -2.39 -0.02 1.75 16 31 H 0.09 2.30 4.68 -2.39 -0.01 2.28 16 32 H 0.08 2.16 5.71 -2.39 -0.01 2.15 16 33 H 0.08 2.34 6.64 -2.38 -0.02 2.33 16 34 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.04 1.14 5.81 -2.39 -0.01 1.12 16 36 H 0.39 4.45 9.12 -74.06 -0.68 3.78 16 37 H 0.06 2.23 7.97 -2.38 -0.02 2.21 16 38 H 0.04 1.19 5.94 -2.38 -0.01 1.18 16 39 H 0.05 2.09 6.67 -2.39 -0.02 2.08 16 40 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 41 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 42 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 43 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 44 H 0.14 2.96 6.33 -2.91 -0.02 2.94 16 45 H 0.15 2.27 6.30 -2.91 -0.02 2.25 16 Total: -1.00 -68.42 353.93 0.81 -67.61 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.31 Total: 17.17 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 4.74 Total: -33.99 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -3.95 Total: -77.04 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -2.32 Total: -20.35 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -68.42 0.81 -67.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880569304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.277 kcal (2) G-P(sol) polarization free energy of solvation -68.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds