Wall clock time and date at job start Tue Mar 31 2020 07:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99970 * 2 1 4 4 H 1.48501 * 109.47129 * 274.06605 * 3 2 1 5 5 H 1.48504 * 109.47123 * 34.06486 * 3 2 1 6 6 H 1.48497 * 109.47100 * 154.06564 * 3 2 1 7 7 C 1.38809 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99993 * 197.50365 * 7 2 1 9 9 N 1.36930 * 120.00254 * 17.50664 * 7 2 1 10 10 C 1.46925 * 120.63252 * 207.95860 * 9 7 2 11 11 C 1.53197 * 108.77574 * 233.63098 * 10 9 7 12 12 C 1.53036 * 109.31263 * 305.36346 * 11 10 9 13 13 N 1.46503 * 109.46212 * 181.38563 * 12 11 10 14 14 C 1.34766 * 120.00277 * 155.00155 * 13 12 11 15 15 O 1.21592 * 120.00323 * 0.02562 * 14 13 12 16 16 N 1.34780 * 120.00562 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00543 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47331 * 180.02562 * 17 16 14 19 19 H 1.09008 * 110.33974 * 307.28981 * 18 17 16 20 20 C 1.51101 * 110.38821 * 69.69479 * 18 17 16 21 21 C 1.30521 * 111.10351 * 135.25180 * 20 18 17 22 22 C 1.51203 * 111.11417 * 0.02562 * 21 20 18 23 23 C 1.54633 * 104.67682 * 343.55668 * 22 21 20 24 24 C 1.53042 * 109.53868 * 61.36708 * 12 11 10 25 25 C 1.46930 * 120.62796 * 27.98165 * 9 7 2 26 26 H 0.96998 * 120.00113 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.59053 * 113.84658 * 10 9 7 28 28 H 1.08995 * 109.58559 * 353.41337 * 10 9 7 29 29 H 1.08998 * 109.49976 * 185.41122 * 11 10 9 30 30 H 1.09003 * 109.52582 * 65.33267 * 11 10 9 31 31 H 1.08997 * 109.46190 * 301.35717 * 12 11 10 32 32 H 0.97008 * 119.99621 * 334.99887 * 13 12 11 33 33 H 0.97001 * 119.99384 * 0.02562 * 16 14 13 34 34 H 1.08995 * 109.47162 * 59.99527 * 17 16 14 35 35 H 1.09004 * 109.46939 * 299.99890 * 17 16 14 36 36 H 1.08008 * 124.44505 * 315.26575 * 20 18 17 37 37 H 1.08004 * 124.44572 * 180.02562 * 21 20 18 38 38 H 1.09003 * 110.42146 * 224.75556 * 22 21 20 39 39 H 1.09001 * 110.40202 * 102.35438 * 22 21 20 40 40 H 1.08994 * 111.03808 * 266.59224 * 23 22 21 41 41 H 1.09000 * 111.03692 * 142.69238 * 23 22 21 42 42 H 1.08997 * 109.49957 * 58.58440 * 24 12 11 43 43 H 1.09000 * 109.49861 * 178.68470 * 24 12 11 44 44 H 1.08995 * 109.58526 * 246.14921 * 25 9 7 45 45 H 1.08993 * 109.59037 * 6.58165 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4117 2.0961 -1.3966 5 1 1.4932 2.6264 0.7842 6 1 3.5881 1.4169 0.6123 7 6 2.0102 -1.2022 0.0005 8 1 3.0527 -1.2237 0.2819 9 7 1.3731 -2.3607 -0.3557 10 6 1.8151 -3.6542 0.1831 11 6 2.0771 -4.6110 -0.9843 12 6 0.8273 -4.6905 -1.8638 13 7 1.0628 -5.6301 -2.9629 14 6 0.0224 -6.2497 -3.5544 15 8 -1.1118 -6.0286 -3.1763 16 7 0.2391 -7.1146 -4.5652 17 6 -0.8918 -7.7885 -5.2079 18 6 -0.3747 -8.7092 -6.3150 19 1 0.2750 -8.1572 -6.9942 20 6 0.3615 -9.8867 -5.7193 21 6 0.0130 -11.0019 -6.3011 22 6 -1.0138 -10.7542 -7.3830 23 6 -1.5562 -9.3359 -7.0909 24 6 0.5146 -3.3056 -2.4353 25 6 0.2348 -2.3340 -1.2844 26 1 -0.4850 0.8400 -0.0004 27 1 1.0379 -4.0669 0.8264 28 1 2.7321 -3.5172 0.7561 29 1 2.3127 -5.6021 -0.5965 30 1 2.9155 -4.2430 -1.5758 31 1 -0.0163 -5.0353 -1.2659 32 1 1.9677 -5.8063 -3.2648 33 1 1.1440 -7.2913 -4.8666 34 1 -1.5620 -7.0440 -5.6374 35 1 -1.4314 -8.3789 -4.4673 36 1 1.0813 -9.8149 -4.9173 37 1 0.4066 -11.9742 -6.0436 38 1 -1.8171 -11.4883 -7.3202 39 1 -0.5449 -10.7865 -8.3664 40 1 -2.4517 -9.3794 -6.4712 41 1 -1.7491 -8.7926 -8.0160 42 1 1.3675 -2.9494 -3.0129 43 1 -0.3619 -3.3676 -3.0802 44 1 -0.6711 -2.6391 -0.7608 45 1 0.1092 -1.3260 -1.6795 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883348859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:30 Heat of formation + Delta-G solvation = 0.116043 kcal Electronic energy + Delta-G solvation = -23400.169470 eV Core-core repulsion = 20031.999814 eV Total energy + Delta-G solvation = -3368.169656 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.05527 -39.02262 -37.38888 -34.63017 -34.22803 -32.09367 -30.34777 -29.83940 -29.36345 -28.80722 -25.18164 -24.11721 -22.18931 -21.89549 -21.13933 -20.36973 -19.37149 -19.02709 -18.02862 -16.81845 -16.48734 -16.12994 -15.39221 -15.12236 -14.81514 -14.34767 -14.02026 -13.75683 -13.50239 -13.45111 -12.96417 -12.60254 -12.32860 -12.31976 -12.21694 -12.20331 -11.60775 -11.52919 -11.41265 -11.26404 -11.08999 -10.87331 -10.71959 -10.33842 -10.18512 -10.05254 -9.91658 -9.71421 -9.50638 -9.28476 -9.07377 -8.55894 -8.34280 -6.65450 -5.75340 -3.18185 1.91089 2.87439 3.39895 3.46589 3.46668 3.48202 4.20251 4.24502 4.46701 4.52045 4.55002 4.86301 5.01542 5.13511 5.17210 5.34740 5.39568 5.44053 5.48349 5.50568 5.59644 5.67297 5.70590 5.77625 5.89279 5.93508 6.14007 6.16021 6.28627 6.42423 6.50331 6.51091 6.53346 6.64956 6.69873 6.81854 6.96117 7.00556 7.18035 7.43581 7.72579 7.82839 8.22559 8.48290 8.84846 9.24149 9.87652 10.44623 11.33174 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.041480 B = 0.002566 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.866657 B =10907.664487 C =11156.780375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.149 3.851 11 C -0.138 4.138 12 C 0.169 3.831 13 N -0.740 5.740 14 C 0.700 3.300 15 O -0.590 6.590 16 N -0.752 5.752 17 C 0.149 3.851 18 C -0.080 4.080 19 H 0.087 0.913 20 C -0.159 4.159 21 C -0.168 4.168 22 C -0.101 4.101 23 C -0.118 4.118 24 C -0.146 4.146 25 C 0.174 3.826 26 H 0.254 0.746 27 H 0.020 0.980 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.389 0.611 33 H 0.393 0.607 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.021 0.979 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.884 -20.591 -14.301 25.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.021 3.979 11 C -0.178 4.178 12 C 0.065 3.935 13 N -0.394 5.394 14 C 0.400 3.600 15 O -0.467 6.467 16 N -0.408 5.408 17 C 0.025 3.975 18 C -0.099 4.099 19 H 0.106 0.894 20 C -0.177 4.177 21 C -0.186 4.186 22 C -0.138 4.138 23 C -0.156 4.156 24 C -0.187 4.187 25 C 0.047 3.953 26 H 0.064 0.936 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.222 0.778 33 H 0.226 0.774 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.039 0.961 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.686 -20.211 -13.903 24.541 hybrid contribution 1.366 0.630 -0.327 1.540 sum 2.052 -19.581 -14.229 24.292 Atomic orbital electron populations 1.70048 1.05258 1.25504 1.53662 1.25063 0.95275 0.98453 1.00909 0.86278 0.79130 0.83798 0.77566 1.21518 1.21796 1.20411 1.19188 0.92725 0.84878 1.41539 0.91635 1.44116 1.36415 1.01417 1.49623 1.20839 0.97952 0.86735 0.92336 1.22340 0.96836 0.99638 0.99001 1.20893 0.98483 0.88226 0.85920 1.45520 1.07707 1.47428 1.38738 1.16021 0.85289 0.78943 0.79732 1.90933 1.21265 1.67931 1.66599 1.45138 1.09941 1.47816 1.37948 1.21155 0.88225 0.94334 0.93802 1.21312 0.96962 0.95252 0.96365 0.89445 1.23273 1.00263 0.94500 0.99697 1.23310 0.99249 0.98387 0.97649 1.21392 0.97479 0.96955 0.98016 1.22469 0.97525 0.95378 1.00224 1.22574 1.00422 0.95277 1.00417 1.20760 0.88724 0.98140 0.87651 0.93603 0.96163 0.92365 0.92710 0.91954 0.90126 0.77813 0.77428 0.91571 0.91629 0.85826 0.85932 0.91078 0.90695 0.90465 0.90531 0.92853 0.92843 0.96111 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 11.22 55.49 0.62 -26.03 16 2 C 0.00 0.05 4.90 -17.43 -0.09 -0.03 16 3 Si 0.90 21.85 29.59 -169.99 -5.03 16.82 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.25 -6.99 9.58 -15.06 -0.14 -7.14 16 8 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 9 N -0.59 -15.02 2.99 -172.32 -0.52 -15.54 16 10 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 11 C -0.14 -2.33 5.55 -26.61 -0.15 -2.48 16 12 C 0.17 3.04 2.41 -67.89 -0.16 2.87 16 13 N -0.74 -10.77 5.08 -58.64 -0.30 -11.07 16 14 C 0.70 10.99 8.53 -86.92 -0.74 10.25 16 15 O -0.59 -12.06 16.01 5.28 0.08 -11.98 16 16 N -0.75 -8.34 5.43 -65.23 -0.35 -8.69 16 17 C 0.15 1.53 5.00 -4.04 -0.02 1.51 16 18 C -0.08 -0.59 2.94 -90.72 -0.27 -0.86 16 19 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 20 C -0.16 -1.17 9.88 -35.70 -0.35 -1.52 16 21 C -0.17 -1.14 10.78 -35.65 -0.38 -1.53 16 22 C -0.10 -0.61 6.82 -26.78 -0.18 -0.79 16 23 C -0.12 -0.77 6.71 -25.02 -0.17 -0.94 16 24 C -0.15 -3.02 5.65 -26.61 -0.15 -3.17 16 25 C 0.17 4.32 5.31 -3.70 -0.02 4.30 16 26 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 32 H 0.39 4.39 8.62 -40.82 -0.35 4.04 16 33 H 0.39 3.19 8.42 -40.82 -0.34 2.85 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 36 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.53 7.91 -51.93 -0.41 0.11 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 2.44 6.06 -51.93 -0.31 2.13 16 LS Contribution 358.73 15.07 5.41 5.41 Total: -1.00 -32.96 358.73 -10.63 -43.58 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.69 Total: 3.95 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -2.85 Total: 3.55 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.55 Total: -61.33 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.96 -10.63 -43.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883348859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.700 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds