Wall clock time and date at job start Tue Mar 31 2020 07:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00290 * 2 1 4 4 H 1.48506 * 109.47289 * 269.99617 * 3 2 1 5 5 H 1.48503 * 109.47250 * 29.99355 * 3 2 1 6 6 H 1.48500 * 109.47597 * 149.99637 * 3 2 1 7 7 C 1.37875 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99907 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00287 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.47424 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00242 * 169.99715 * 10 9 7 12 12 C 1.53235 * 109.33799 * 187.24947 * 11 10 9 13 13 N 1.47076 * 108.52525 * 306.16838 * 12 11 10 14 14 C 1.34773 * 120.88220 * 231.18681 * 13 12 11 15 15 O 1.21588 * 119.99957 * 184.99423 * 14 13 12 16 16 N 1.34773 * 120.00045 * 4.99920 * 14 13 12 17 17 C 1.46504 * 119.99939 * 174.91567 * 16 14 13 18 18 C 1.53004 * 109.46932 * 179.97438 * 17 16 14 19 19 H 1.09002 * 110.43312 * 52.65233 * 18 17 16 20 20 C 1.51099 * 110.39205 * 290.30378 * 18 17 16 21 21 C 1.30796 * 111.15364 * 224.77954 * 20 18 17 22 22 C 1.51101 * 110.94467 * 359.95411 * 21 20 18 23 23 C 1.54633 * 104.82619 * 16.48807 * 22 21 20 24 24 C 1.47078 * 118.23657 * 51.46232 * 13 12 11 25 25 C 1.46904 * 110.99680 * 294.29894 * 10 9 7 26 26 H 0.97002 * 119.99713 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47644 * 59.99618 * 9 7 2 28 28 H 1.09004 * 109.46724 * 299.99596 * 9 7 2 29 29 H 1.08999 * 109.49081 * 67.29276 * 11 10 9 30 30 H 1.08999 * 109.49102 * 307.21072 * 11 10 9 31 31 H 1.09001 * 109.62478 * 186.45596 * 12 11 10 32 32 H 1.09000 * 109.78773 * 65.98141 * 12 11 10 33 33 H 0.97004 * 120.00579 * 354.91506 * 16 14 13 34 34 H 1.08997 * 109.46929 * 60.00458 * 17 16 14 35 35 H 1.08990 * 109.47236 * 299.99580 * 17 16 14 36 36 H 1.08007 * 124.44411 * 44.76364 * 20 18 17 37 37 H 1.07999 * 124.60740 * 179.97438 * 21 20 18 38 38 H 1.09000 * 110.38926 * 257.61517 * 22 21 20 39 39 H 1.08999 * 110.38734 * 135.35630 * 22 21 20 40 40 H 1.09004 * 111.03989 * 93.34206 * 23 22 21 41 41 H 1.09006 * 111.03731 * 217.27686 * 23 22 21 42 42 H 1.08997 * 109.63089 * 68.24685 * 24 13 12 43 43 H 1.09002 * 109.63124 * 188.83460 * 24 13 12 44 44 H 1.09000 * 109.49163 * 292.70292 * 25 10 9 45 45 H 1.09000 * 109.49143 * 52.78496 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 4.0011 -2.5792 0.0010 11 6 5.4500 -2.6254 -0.2367 12 6 5.8897 -4.0831 -0.4095 13 7 5.4257 -4.8523 0.7551 14 6 6.2755 -5.6323 1.4521 15 8 5.8576 -6.3311 2.3551 16 7 7.5885 -5.6377 1.1482 17 6 8.5287 -6.3984 1.9752 18 6 9.9442 -6.2379 1.4170 19 1 10.1893 -5.1824 1.2989 20 6 10.0740 -6.9593 0.0957 21 6 11.1853 -7.6470 0.0406 22 6 11.9786 -7.4946 1.3176 23 6 10.9705 -6.9288 2.3446 24 6 4.0084 -4.7526 1.1351 25 6 3.6440 -3.2638 1.2507 26 1 -0.4850 0.8401 -0.0004 27 1 3.8746 -0.6802 0.8910 28 1 3.8752 -0.6806 -0.8889 29 1 5.9722 -2.1864 0.6134 30 1 5.6885 -2.0640 -1.1400 31 1 6.9768 -4.1327 -0.4716 32 1 5.4519 -4.4952 -1.3187 33 1 7.9112 -5.1379 0.3820 34 1 8.2515 -7.4525 1.9642 35 1 8.4968 -6.0249 2.9986 36 1 9.3446 -6.9137 -0.6995 37 1 11.4959 -8.2440 -0.8040 38 1 12.8035 -6.7973 1.1713 39 1 12.3549 -8.4626 1.6486 40 1 10.5033 -7.7303 2.9168 41 1 11.4493 -6.2061 3.0055 42 1 3.3905 -5.2256 0.3719 43 1 3.8510 -5.2449 2.0947 44 1 4.1913 -2.8159 2.0801 45 1 2.5727 -3.1654 1.4260 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883785281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:25 Heat of formation + Delta-G solvation = 5.192110 kcal Electronic energy + Delta-G solvation = -23580.032829 eV Core-core repulsion = 20212.083288 eV Total energy + Delta-G solvation = -3367.949541 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.34691 -39.12722 -37.65860 -34.71610 -34.42650 -32.37269 -30.93982 -30.02203 -29.23118 -28.43151 -25.75215 -24.40722 -23.15063 -21.86225 -21.11246 -20.58301 -19.25533 -19.04085 -18.01452 -16.84461 -16.52577 -16.12735 -15.64545 -15.38490 -14.71238 -14.57456 -14.38285 -14.07875 -13.89966 -13.71790 -13.46273 -12.94191 -12.47761 -12.37956 -12.26785 -12.24506 -12.10106 -11.63335 -11.60628 -11.53747 -11.30603 -11.21594 -10.94182 -10.78382 -10.55838 -10.37227 -9.99082 -9.88777 -9.34166 -9.28692 -9.14291 -8.60871 -8.36651 -7.46631 -6.08926 -4.06905 1.88877 2.71636 3.25049 3.30632 3.33135 3.34153 3.87698 4.21241 4.26993 4.38152 4.49306 4.61544 4.83678 4.97888 5.10048 5.12952 5.14591 5.21004 5.29540 5.34132 5.38532 5.45961 5.55235 5.59280 5.64142 5.72442 5.77377 5.86977 5.91791 5.97953 6.07888 6.14586 6.36500 6.44750 6.50603 6.50846 6.60764 6.80468 6.92522 7.04651 7.52103 7.79284 7.94608 8.01608 8.59836 8.67786 8.99012 9.52272 11.03980 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.031780 B = 0.002831 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.838599 B = 9889.781430 C =10311.231546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.512 4.512 8 H 0.082 0.918 9 C 0.163 3.837 10 N -0.526 5.526 11 C 0.038 3.962 12 C 0.119 3.881 13 N -0.626 5.626 14 C 0.707 3.293 15 O -0.596 6.596 16 N -0.750 5.750 17 C 0.149 3.851 18 C -0.081 4.081 19 H 0.088 0.912 20 C -0.160 4.160 21 C -0.167 4.167 22 C -0.102 4.102 23 C -0.117 4.117 24 C 0.134 3.866 25 C 0.050 3.950 26 H 0.264 0.736 27 H -0.012 1.012 28 H 0.025 0.975 29 H 0.027 0.973 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.394 0.606 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.025 0.975 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.525 -12.386 0.609 26.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.550 4.550 8 H 0.100 0.900 9 C 0.037 3.963 10 N -0.250 5.250 11 C -0.092 4.092 12 C -0.004 4.004 13 N -0.363 5.363 14 C 0.408 3.592 15 O -0.475 6.475 16 N -0.408 5.408 17 C 0.024 3.976 18 C -0.099 4.099 19 H 0.106 0.894 20 C -0.178 4.178 21 C -0.185 4.185 22 C -0.139 4.139 23 C -0.155 4.155 24 C 0.011 3.989 25 C -0.079 4.079 26 H 0.074 0.926 27 H 0.006 0.994 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.231 0.769 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.043 0.957 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 22.823 -13.011 0.926 26.287 hybrid contribution 0.943 1.768 0.033 2.004 sum 23.766 -11.243 0.959 26.308 Atomic orbital electron populations 1.69892 1.06108 1.26891 1.50815 1.24899 0.94743 0.98856 0.94802 0.86864 0.80261 0.84060 0.78549 1.20142 1.21183 1.19371 1.21012 0.88596 0.94789 1.50575 0.90002 1.20173 0.97217 0.83810 0.95110 1.61897 1.09672 1.19170 1.34308 1.22430 0.90980 0.94993 1.00767 1.21726 0.97767 0.92043 0.88896 1.47418 1.10175 1.47414 1.31341 1.15834 0.80840 0.80503 0.82015 1.90891 1.76893 1.45543 1.34126 1.45271 1.05948 1.55547 1.34081 1.21174 0.86030 0.96380 0.93974 1.21312 0.94563 1.00452 0.93608 0.89423 1.23344 0.98100 0.98497 0.97885 1.23363 0.96412 0.99902 0.98830 1.21370 0.98064 1.01270 0.93158 1.22468 0.95748 1.00193 0.97115 1.21827 0.78541 0.97041 1.01506 1.22501 1.02954 0.92055 0.90379 0.92607 0.99387 0.95694 0.95474 0.90126 0.91261 0.90528 0.76924 0.91484 0.91680 0.85813 0.85822 0.90675 0.91093 0.90485 0.90532 0.90968 0.89207 0.95685 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.51 -14.16 8.96 -34.44 -0.31 -14.47 16 8 H 0.08 2.46 7.37 -52.49 -0.39 2.07 16 9 C 0.16 3.83 3.79 -4.98 -0.02 3.81 16 10 N -0.53 -10.50 4.62 -235.46 -1.09 -11.59 16 11 C 0.04 0.59 5.62 -3.70 -0.02 0.57 16 12 C 0.12 1.53 6.59 -3.61 -0.02 1.50 16 13 N -0.63 -9.49 3.00 -177.91 -0.53 -10.02 16 14 C 0.71 10.96 8.31 -86.92 -0.72 10.24 16 15 O -0.60 -11.41 15.83 5.29 0.08 -11.33 16 16 N -0.75 -8.51 5.34 -65.23 -0.35 -8.86 16 17 C 0.15 1.48 5.00 -4.04 -0.02 1.46 16 18 C -0.08 -0.59 2.94 -90.72 -0.27 -0.86 16 19 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 20 C -0.16 -1.18 9.88 -35.78 -0.35 -1.54 16 21 C -0.17 -1.13 10.80 -35.77 -0.39 -1.51 16 22 C -0.10 -0.60 6.80 -26.83 -0.18 -0.78 16 23 C -0.12 -0.74 6.71 -25.01 -0.17 -0.90 16 24 C 0.13 2.23 6.61 -3.36 -0.02 2.21 16 25 C 0.05 0.95 5.47 -3.46 -0.02 0.94 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 27 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 28 H 0.03 0.58 7.40 -51.93 -0.38 0.20 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 1.16 7.99 -51.93 -0.41 0.75 16 31 H 0.07 0.65 5.63 -51.93 -0.29 0.36 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.39 3.58 5.90 -40.82 -0.24 3.34 16 34 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 37 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.49 7.91 -51.93 -0.41 0.08 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.09 1.53 7.09 -51.93 -0.37 1.16 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.10 2.16 6.67 -51.93 -0.35 1.81 16 LS Contribution 352.90 15.07 5.32 5.32 Total: -1.00 -32.74 352.90 -10.53 -43.27 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.46 Total: 0.58 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -2.61 Total: 2.53 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -1.20 Total: -56.83 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.74 -10.53 -43.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883785281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.465 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds