Wall clock time and date at job start Tue Mar 31 2020 07:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00290 * 2 1 4 4 H 1.48506 * 109.47289 * 269.99617 * 3 2 1 5 5 H 1.48503 * 109.47250 * 29.99355 * 3 2 1 6 6 H 1.48500 * 109.47597 * 149.99637 * 3 2 1 7 7 C 1.37875 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99907 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00287 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.47424 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00242 * 169.99715 * 10 9 7 12 12 C 1.53235 * 109.33799 * 187.24947 * 11 10 9 13 13 N 1.47076 * 108.52525 * 306.16838 * 12 11 10 14 14 C 1.34773 * 120.88220 * 231.18681 * 13 12 11 15 15 O 1.21588 * 119.99957 * 184.99423 * 14 13 12 16 16 N 1.34773 * 120.00045 * 4.99920 * 14 13 12 17 17 C 1.46504 * 119.99939 * 174.91567 * 16 14 13 18 18 C 1.53004 * 109.46932 * 179.97438 * 17 16 14 19 19 H 1.09002 * 110.43312 * 52.65233 * 18 17 16 20 20 C 1.51099 * 110.39205 * 290.30378 * 18 17 16 21 21 C 1.30796 * 111.15364 * 224.77954 * 20 18 17 22 22 C 1.51101 * 110.94467 * 359.95411 * 21 20 18 23 23 C 1.54633 * 104.82619 * 16.48807 * 22 21 20 24 24 C 1.47078 * 118.23657 * 51.46232 * 13 12 11 25 25 C 1.46904 * 110.99680 * 294.29894 * 10 9 7 26 26 H 0.97002 * 119.99713 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47644 * 59.99618 * 9 7 2 28 28 H 1.09004 * 109.46724 * 299.99596 * 9 7 2 29 29 H 1.08999 * 109.49081 * 67.29276 * 11 10 9 30 30 H 1.08999 * 109.49102 * 307.21072 * 11 10 9 31 31 H 1.09001 * 109.62478 * 186.45596 * 12 11 10 32 32 H 1.09000 * 109.78773 * 65.98141 * 12 11 10 33 33 H 0.97004 * 120.00579 * 354.91506 * 16 14 13 34 34 H 1.08997 * 109.46929 * 60.00458 * 17 16 14 35 35 H 1.08990 * 109.47236 * 299.99580 * 17 16 14 36 36 H 1.08007 * 124.44411 * 44.76364 * 20 18 17 37 37 H 1.07999 * 124.60740 * 179.97438 * 21 20 18 38 38 H 1.09000 * 110.38926 * 257.61517 * 22 21 20 39 39 H 1.08999 * 110.38734 * 135.35630 * 22 21 20 40 40 H 1.09004 * 111.03989 * 93.34206 * 23 22 21 41 41 H 1.09006 * 111.03731 * 217.27686 * 23 22 21 42 42 H 1.08997 * 109.63089 * 68.24685 * 24 13 12 43 43 H 1.09002 * 109.63124 * 188.83460 * 24 13 12 44 44 H 1.09000 * 109.49163 * 292.70292 * 25 10 9 45 45 H 1.09000 * 109.49143 * 52.78496 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 4.0011 -2.5792 0.0010 11 6 5.4500 -2.6254 -0.2367 12 6 5.8897 -4.0831 -0.4095 13 7 5.4257 -4.8523 0.7551 14 6 6.2755 -5.6323 1.4521 15 8 5.8576 -6.3311 2.3551 16 7 7.5885 -5.6377 1.1482 17 6 8.5287 -6.3984 1.9752 18 6 9.9442 -6.2379 1.4170 19 1 10.1893 -5.1824 1.2989 20 6 10.0740 -6.9593 0.0957 21 6 11.1853 -7.6470 0.0406 22 6 11.9786 -7.4946 1.3176 23 6 10.9705 -6.9288 2.3446 24 6 4.0084 -4.7526 1.1351 25 6 3.6440 -3.2638 1.2507 26 1 -0.4850 0.8401 -0.0004 27 1 3.8746 -0.6802 0.8910 28 1 3.8752 -0.6806 -0.8889 29 1 5.9722 -2.1864 0.6134 30 1 5.6885 -2.0640 -1.1400 31 1 6.9768 -4.1327 -0.4716 32 1 5.4519 -4.4952 -1.3187 33 1 7.9112 -5.1379 0.3820 34 1 8.2515 -7.4525 1.9642 35 1 8.4968 -6.0249 2.9986 36 1 9.3446 -6.9137 -0.6995 37 1 11.4959 -8.2440 -0.8040 38 1 12.8035 -6.7973 1.1713 39 1 12.3549 -8.4626 1.6486 40 1 10.5033 -7.7303 2.9168 41 1 11.4493 -6.2061 3.0055 42 1 3.3905 -5.2256 0.3719 43 1 3.8510 -5.2449 2.0947 44 1 4.1913 -2.8159 2.0801 45 1 2.5727 -3.1654 1.4260 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883785281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:24 Heat of formation + Delta-G solvation = -17.223274 kcal Electronic energy + Delta-G solvation = -23581.004833 eV Core-core repulsion = 20212.083288 eV Total energy + Delta-G solvation = -3368.921545 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.50985 -39.82901 -38.99656 -36.00274 -35.68869 -34.38595 -32.18325 -31.04187 -30.14399 -29.58116 -27.28672 -25.35644 -24.38713 -23.51249 -22.15256 -21.63766 -20.39712 -19.64035 -19.20348 -18.85225 -17.48076 -16.93273 -16.67534 -16.60044 -16.22680 -16.04141 -15.64705 -15.33296 -15.16235 -14.93842 -14.80848 -14.45144 -14.04983 -13.60150 -13.26560 -12.96605 -12.85920 -12.80796 -12.74298 -12.50033 -12.32797 -12.24770 -12.08967 -12.08463 -11.94881 -11.87847 -11.85565 -11.45512 -11.18874 -10.77036 -10.26359 -9.78652 -9.59716 -9.04798 -8.27235 -6.30915 1.35660 1.37305 1.37558 1.47506 1.59590 2.08791 2.35085 2.87373 3.04999 3.15175 3.67992 3.72239 3.92090 3.93998 4.04000 4.13308 4.23953 4.31332 4.37501 4.41616 4.52531 4.58111 4.62657 4.70514 4.74974 4.81934 4.84840 4.94881 4.98032 4.99521 5.01090 5.05555 5.11567 5.21408 5.38112 5.42043 5.49448 5.52857 5.65762 5.85695 5.99665 6.01887 6.27965 6.62332 6.75817 6.93271 7.32652 7.50323 8.89184 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.031780 B = 0.002831 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.838599 B = 9889.781430 C =10311.231546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.948 3.052 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.252 1.252 7 C -0.517 4.517 8 H 0.040 0.960 9 C 0.173 3.827 10 N -0.539 5.539 11 C 0.035 3.965 12 C 0.124 3.876 13 N -0.628 5.628 14 C 0.703 3.297 15 O -0.637 6.637 16 N -0.731 5.731 17 C 0.150 3.850 18 C -0.071 4.071 19 H 0.097 0.903 20 C -0.176 4.176 21 C -0.166 4.166 22 C -0.102 4.102 23 C -0.118 4.118 24 C 0.145 3.855 25 C 0.059 3.941 26 H 0.266 0.734 27 H -0.016 1.016 28 H 0.037 0.963 29 H 0.028 0.972 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.408 0.592 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.125 0.875 37 H 0.133 0.867 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.019 0.981 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.134 -11.811 -0.333 29.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.772 3.228 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.176 1.176 7 C -0.555 4.555 8 H 0.058 0.942 9 C 0.046 3.954 10 N -0.264 5.264 11 C -0.093 4.093 12 C 0.001 3.999 13 N -0.365 5.365 14 C 0.404 3.596 15 O -0.519 6.519 16 N -0.390 5.390 17 C 0.026 3.974 18 C -0.090 4.090 19 H 0.115 0.885 20 C -0.194 4.194 21 C -0.184 4.184 22 C -0.139 4.139 23 C -0.156 4.156 24 C 0.022 3.978 25 C -0.070 4.070 26 H 0.075 0.925 27 H 0.002 0.998 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.247 0.753 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.143 0.857 37 H 0.151 0.849 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.037 0.963 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 26.495 -12.445 -0.050 29.273 hybrid contribution -0.183 1.470 0.332 1.518 sum 26.312 -10.975 0.281 28.511 Atomic orbital electron populations 1.70055 1.08165 1.28084 1.52555 1.25858 0.95595 1.03192 0.94420 0.85700 0.79196 0.78580 0.79330 1.18652 1.21121 1.17635 1.21266 0.91095 0.93306 1.49852 0.94190 1.19936 0.94268 0.86053 0.95163 1.61797 1.13027 1.17060 1.34472 1.22599 0.87761 0.97321 1.01643 1.21882 1.00282 0.89723 0.88025 1.47401 1.09372 1.47726 1.32008 1.16011 0.81901 0.80160 0.81503 1.90865 1.77835 1.47252 1.35939 1.45149 1.04484 1.55029 1.34301 1.21246 0.87214 0.95261 0.93660 1.21259 0.92731 1.01205 0.93795 0.88493 1.23397 0.98673 0.99359 0.97985 1.23597 0.96237 0.99184 0.99388 1.21411 0.98067 1.01893 0.92543 1.22510 0.95583 1.00312 0.97242 1.21529 0.80016 0.94957 1.01338 1.22329 1.00953 0.93658 0.90109 0.92475 0.99842 0.94491 0.95347 0.88144 0.87092 0.89748 0.75290 0.92862 0.92504 0.85727 0.84872 0.89711 0.90427 0.90951 0.89434 0.90917 0.89876 0.96284 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.91 13.96 21.45 0.30 -58.61 16 2 C 0.01 0.38 5.47 84.65 0.46 0.85 16 3 Si 0.95 43.26 27.47 68.60 1.88 45.14 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 7 C -0.52 -29.33 8.96 25.60 0.23 -29.10 16 8 H 0.04 2.54 7.37 -2.91 -0.02 2.51 16 9 C 0.17 7.98 3.79 85.56 0.32 8.31 16 10 N -0.54 -21.15 4.62 -898.86 -4.15 -25.30 16 11 C 0.04 1.01 5.62 86.38 0.49 1.50 16 12 C 0.12 2.76 6.59 86.35 0.57 3.33 16 13 N -0.63 -18.11 3.00 -835.05 -2.51 -20.62 16 14 C 0.70 20.91 8.31 179.06 1.49 22.39 16 15 O -0.64 -24.38 15.83 -3.99 -0.06 -24.44 16 16 N -0.73 -14.99 5.34 -478.54 -2.56 -17.54 16 17 C 0.15 2.78 5.00 86.38 0.43 3.21 16 18 C -0.07 -0.88 2.94 -10.86 -0.03 -0.91 16 19 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 20 C -0.18 -2.17 9.88 25.98 0.26 -1.92 16 21 C -0.17 -1.83 10.80 25.98 0.28 -1.55 16 22 C -0.10 -0.94 6.80 30.53 0.21 -0.73 16 23 C -0.12 -1.23 6.71 31.71 0.21 -1.02 16 24 C 0.15 4.89 6.61 86.51 0.57 5.47 16 25 C 0.06 2.29 5.47 86.54 0.47 2.76 16 26 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 27 H -0.02 -0.76 7.18 -2.39 -0.02 -0.77 16 28 H 0.04 1.63 7.40 -2.38 -0.02 1.61 16 29 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 2.50 7.99 -2.39 -0.02 2.48 16 31 H 0.11 1.57 5.63 -2.39 -0.01 1.56 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.41 5.98 5.90 -92.71 -0.55 5.43 16 34 H 0.05 1.15 8.13 -2.39 -0.02 1.13 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.12 1.48 8.06 -2.91 -0.02 1.46 16 37 H 0.13 1.18 8.06 -2.91 -0.02 1.15 16 38 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.07 0.82 7.91 -2.38 -0.02 0.80 16 41 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.08 2.91 7.09 -2.39 -0.02 2.90 16 44 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.07 3.19 6.67 -2.39 -0.02 3.17 16 Total: -1.00 -72.98 352.90 -0.77 -73.75 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.37 Total: 15.05 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 5.96 Total: 12.58 kcal Atomic # 7 Polarization: -113.16 SS G_CDS: -8.92 Total: -122.08 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.06 Total: -24.44 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.88 Total: 45.14 kcal Total: -72.98 -0.77 -73.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883785281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.526 kcal (2) G-P(sol) polarization free energy of solvation -72.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds