Wall clock time and date at job start Tue Mar 31 2020 07:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99820 * 2 1 4 4 H 1.48501 * 109.47170 * 269.99823 * 3 2 1 5 5 H 1.48499 * 109.47408 * 30.00297 * 3 2 1 6 6 H 1.48504 * 109.47184 * 150.00330 * 3 2 1 7 7 C 1.37872 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00449 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99912 * 179.72474 * 7 2 1 10 10 N 1.46904 * 109.47058 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99958 * 294.30016 * 10 9 7 12 12 C 1.53238 * 109.33824 * 172.74564 * 11 10 9 13 13 N 1.47080 * 108.52327 * 53.83308 * 12 11 10 14 14 C 1.34771 * 120.88486 * 128.78726 * 13 12 11 15 15 O 1.21585 * 120.00045 * 175.02660 * 14 13 12 16 16 N 1.34778 * 120.00099 * 355.03559 * 14 13 12 17 17 C 1.46498 * 120.00465 * 185.08054 * 16 14 13 18 18 C 1.52997 * 109.47684 * 179.97438 * 17 16 14 19 19 H 1.09002 * 110.33945 * 307.29047 * 18 17 16 20 20 C 1.51104 * 110.38616 * 69.69406 * 18 17 16 21 21 C 1.30519 * 111.10521 * 135.25192 * 20 18 17 22 22 C 1.51105 * 111.10566 * 359.97438 * 21 20 18 23 23 C 1.54630 * 110.38860 * 185.00035 * 18 17 16 24 24 C 1.47083 * 118.23331 * 308.81328 * 13 12 11 25 25 C 1.46898 * 110.99955 * 170.00001 * 10 9 7 26 26 H 0.97008 * 120.00189 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47113 * 299.99602 * 9 7 2 28 28 H 1.09004 * 109.46972 * 60.00072 * 9 7 2 29 29 H 1.08995 * 109.49496 * 292.70578 * 11 10 9 30 30 H 1.09000 * 109.49577 * 52.78689 * 11 10 9 31 31 H 1.08996 * 109.63191 * 294.11705 * 12 11 10 32 32 H 1.09008 * 109.62914 * 173.53888 * 12 11 10 33 33 H 0.97003 * 119.99911 * 5.07518 * 16 14 13 34 34 H 1.09007 * 109.46717 * 300.00076 * 17 16 14 35 35 H 1.09005 * 109.47072 * 59.98769 * 17 16 14 36 36 H 1.08002 * 124.44741 * 315.25014 * 20 18 17 37 37 H 1.08003 * 124.44902 * 179.97438 * 21 20 18 38 38 H 1.08996 * 110.38951 * 224.75493 * 22 21 20 39 39 H 1.09001 * 110.47972 * 102.42041 * 22 21 20 40 40 H 1.08999 * 111.03595 * 334.58006 * 23 18 17 41 41 H 1.08989 * 111.04144 * 98.52416 * 23 18 17 42 42 H 1.08998 * 109.62972 * 291.47163 * 24 13 12 43 43 H 1.09002 * 109.62312 * 170.88979 * 24 13 12 44 44 H 1.09004 * 109.49584 * 307.21429 * 25 10 9 45 45 H 1.09003 * 109.49364 * 67.26414 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0068 10 7 4.0011 -2.5790 -0.0055 11 6 3.6497 -3.2605 1.2475 12 6 4.0150 -4.7446 1.1377 13 7 5.4293 -4.8502 0.7479 14 6 6.2824 -5.6279 1.4434 15 8 7.4252 -5.7750 1.0552 16 7 5.8687 -6.2428 2.5691 17 6 6.8234 -6.9971 3.3850 18 6 6.1019 -7.5903 4.5968 19 1 5.5574 -6.8122 5.1319 20 6 5.1616 -8.6906 4.1629 21 6 5.2633 -9.7311 4.9443 22 6 6.2889 -9.4985 6.0294 23 6 7.1125 -8.2854 5.5384 24 6 5.8880 -4.0839 -0.4207 25 6 5.4490 -2.6257 -0.2496 26 1 -0.4851 0.8401 0.0004 27 1 3.8711 -0.6820 -0.8993 28 1 3.8785 -0.6784 0.8807 29 1 4.2008 -2.8104 2.0732 30 1 2.5792 -3.1617 1.4275 31 1 3.3903 -5.2205 0.3819 32 1 3.8635 -5.2313 2.1013 33 1 4.9387 -6.1859 2.8392 34 1 7.2548 -7.8014 2.7890 35 1 7.6167 -6.3312 3.7249 36 1 4.4931 -8.6248 3.3172 37 1 4.6898 -10.6391 4.8304 38 1 6.9296 -10.3732 6.1401 39 1 5.7981 -9.2659 6.9745 40 1 7.9978 -8.6096 4.9914 41 1 7.3845 -7.6347 6.3694 42 1 5.4434 -4.4963 -1.3265 43 1 6.9748 -4.1336 -0.4875 44 1 5.6834 -2.0666 -1.1554 45 1 5.9749 -2.1840 0.5968 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883785282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:27 Heat of formation + Delta-G solvation = 4.806250 kcal Electronic energy + Delta-G solvation = -23627.836344 eV Core-core repulsion = 20259.870071 eV Total energy + Delta-G solvation = -3367.966273 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.34175 -39.11145 -37.66543 -34.69996 -34.41961 -32.40890 -30.96935 -29.95676 -29.19141 -28.48636 -25.77209 -24.27745 -23.28006 -21.77713 -21.08452 -20.60139 -19.24012 -19.00145 -17.98252 -16.85946 -16.50661 -16.11560 -15.62662 -15.36276 -14.68433 -14.55700 -14.44523 -14.09685 -13.86597 -13.69584 -13.52281 -12.88216 -12.44254 -12.38961 -12.23446 -12.20331 -12.06063 -11.60134 -11.59301 -11.45876 -11.25182 -11.18438 -11.10811 -10.79226 -10.60144 -10.35454 -9.95509 -9.90740 -9.36626 -9.25300 -9.12561 -8.62612 -8.36729 -7.46817 -6.11146 -4.09121 1.94890 2.72566 3.24852 3.30469 3.32693 3.34506 3.90481 4.25142 4.31201 4.37079 4.52937 4.63539 4.88277 5.01895 5.14806 5.18591 5.20024 5.21927 5.34838 5.36883 5.42887 5.49766 5.58053 5.59088 5.66353 5.70335 5.74813 5.80614 5.94033 6.02133 6.18457 6.19994 6.36444 6.40064 6.47111 6.55515 6.58457 6.79501 6.90501 7.04267 7.51334 7.78429 7.93649 8.02240 8.57855 8.67699 8.95846 9.50519 11.01657 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023470 B = 0.003028 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.741377 B = 9244.911456 C = 9885.052946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.512 4.512 8 H 0.081 0.919 9 C 0.162 3.838 10 N -0.526 5.526 11 C 0.050 3.950 12 C 0.116 3.884 13 N -0.626 5.626 14 C 0.708 3.292 15 O -0.599 6.599 16 N -0.749 5.749 17 C 0.149 3.851 18 C -0.082 4.082 19 H 0.089 0.911 20 C -0.160 4.160 21 C -0.167 4.167 22 C -0.101 4.101 23 C -0.117 4.117 24 C 0.137 3.863 25 C 0.037 3.963 26 H 0.264 0.736 27 H 0.026 0.974 28 H -0.011 1.011 29 H 0.025 0.975 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.396 0.604 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.769 -16.509 10.332 22.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.550 4.550 8 H 0.099 0.901 9 C 0.036 3.964 10 N -0.250 5.250 11 C -0.079 4.079 12 C -0.008 4.008 13 N -0.364 5.364 14 C 0.409 3.591 15 O -0.479 6.479 16 N -0.407 5.407 17 C 0.025 3.975 18 C -0.100 4.100 19 H 0.107 0.893 20 C -0.178 4.178 21 C -0.185 4.185 22 C -0.138 4.138 23 C -0.155 4.155 24 C 0.014 3.986 25 C -0.092 4.092 26 H 0.074 0.926 27 H 0.044 0.956 28 H 0.006 0.994 29 H 0.043 0.957 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.233 0.767 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 12.238 -16.720 9.677 22.868 hybrid contribution 0.084 1.477 0.734 1.652 sum 12.322 -15.243 10.410 22.193 Atomic orbital electron populations 1.69888 1.06117 1.26924 1.50851 1.24890 0.94733 0.98873 0.94749 0.86872 0.80270 0.84012 0.78657 1.20085 1.21191 1.19325 1.21006 0.88606 0.94728 1.50631 0.90062 1.20182 0.97135 0.83836 0.95229 1.61882 1.10419 1.19290 1.33452 1.22355 1.02901 0.91756 0.90880 1.21855 0.81129 0.98103 0.99670 1.47394 1.09494 1.47847 1.31621 1.15818 0.84390 0.78845 0.80039 1.90877 1.18478 1.67783 1.70722 1.45275 1.13052 1.56824 1.25584 1.21173 0.91114 0.94939 0.90293 1.21323 0.95848 0.97270 0.95568 0.89325 1.23274 0.99655 0.95242 0.99581 1.23282 0.99703 0.98717 0.96809 1.21368 0.96351 0.98240 0.97875 1.22461 0.97733 0.96670 0.98644 1.21595 1.00112 0.90122 0.86764 1.22496 0.90227 0.95641 1.00857 0.92601 0.95585 0.99373 0.95706 0.87968 0.90437 0.91135 0.76727 0.91523 0.91738 0.85758 0.85865 0.91118 0.90642 0.90547 0.90538 0.91048 0.89313 0.90003 0.95510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 21.07 27.47 -169.99 -4.67 16.41 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.51 -13.97 8.96 -34.44 -0.31 -14.28 16 8 H 0.08 2.39 7.38 -52.49 -0.39 2.00 16 9 C 0.16 3.81 3.79 -4.97 -0.02 3.79 16 10 N -0.53 -10.50 4.62 -235.76 -1.09 -11.59 16 11 C 0.05 0.89 5.46 -3.70 -0.02 0.87 16 12 C 0.12 1.62 6.59 -3.60 -0.02 1.60 16 13 N -0.63 -9.50 3.01 -178.19 -0.54 -10.03 16 14 C 0.71 10.99 8.31 -86.92 -0.72 10.27 16 15 O -0.60 -11.27 15.83 5.29 0.08 -11.19 16 16 N -0.75 -8.82 5.34 -65.22 -0.35 -9.17 16 17 C 0.15 1.53 5.00 -4.04 -0.02 1.51 16 18 C -0.08 -0.64 2.94 -90.72 -0.27 -0.91 16 19 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 20 C -0.16 -1.27 9.88 -35.69 -0.35 -1.62 16 21 C -0.17 -1.22 10.77 -35.69 -0.38 -1.60 16 22 C -0.10 -0.64 6.81 -26.83 -0.18 -0.82 16 23 C -0.12 -0.78 6.71 -25.02 -0.17 -0.94 16 24 C 0.14 2.12 6.58 -3.60 -0.02 2.10 16 25 C 0.04 0.63 5.62 -3.70 -0.02 0.61 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.03 0.61 7.41 -51.93 -0.38 0.23 16 28 H -0.01 -0.28 7.17 -51.93 -0.37 -0.65 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.10 1.98 6.67 -51.93 -0.35 1.63 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 0.77 5.63 -51.92 -0.29 0.48 16 33 H 0.40 3.92 5.90 -40.82 -0.24 3.68 16 34 H 0.07 0.75 8.13 -51.92 -0.42 0.33 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.51 7.91 -51.93 -0.41 0.10 16 41 H 0.08 0.44 8.14 -51.94 -0.42 0.02 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.09 1.37 7.09 -51.93 -0.37 1.00 16 44 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 45 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 352.86 15.07 5.32 5.32 Total: -1.00 -32.27 352.86 -10.54 -42.81 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.46 Total: 1.10 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -2.61 Total: 2.43 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -1.20 Total: -56.87 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.27 -10.54 -42.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883785282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.612 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds