Wall clock time and date at job start Tue Mar 31 2020 07:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99820 * 2 1 4 4 H 1.48501 * 109.47170 * 269.99823 * 3 2 1 5 5 H 1.48499 * 109.47408 * 30.00297 * 3 2 1 6 6 H 1.48504 * 109.47184 * 150.00330 * 3 2 1 7 7 C 1.37872 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00449 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99912 * 179.72474 * 7 2 1 10 10 N 1.46904 * 109.47058 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99958 * 294.30016 * 10 9 7 12 12 C 1.53238 * 109.33824 * 172.74564 * 11 10 9 13 13 N 1.47080 * 108.52327 * 53.83308 * 12 11 10 14 14 C 1.34771 * 120.88486 * 128.78726 * 13 12 11 15 15 O 1.21585 * 120.00045 * 175.02660 * 14 13 12 16 16 N 1.34778 * 120.00099 * 355.03559 * 14 13 12 17 17 C 1.46498 * 120.00465 * 185.08054 * 16 14 13 18 18 C 1.52997 * 109.47684 * 179.97438 * 17 16 14 19 19 H 1.09002 * 110.33945 * 307.29047 * 18 17 16 20 20 C 1.51104 * 110.38616 * 69.69406 * 18 17 16 21 21 C 1.30519 * 111.10521 * 135.25192 * 20 18 17 22 22 C 1.51105 * 111.10566 * 359.97438 * 21 20 18 23 23 C 1.54630 * 110.38860 * 185.00035 * 18 17 16 24 24 C 1.47083 * 118.23331 * 308.81328 * 13 12 11 25 25 C 1.46898 * 110.99955 * 170.00001 * 10 9 7 26 26 H 0.97008 * 120.00189 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47113 * 299.99602 * 9 7 2 28 28 H 1.09004 * 109.46972 * 60.00072 * 9 7 2 29 29 H 1.08995 * 109.49496 * 292.70578 * 11 10 9 30 30 H 1.09000 * 109.49577 * 52.78689 * 11 10 9 31 31 H 1.08996 * 109.63191 * 294.11705 * 12 11 10 32 32 H 1.09008 * 109.62914 * 173.53888 * 12 11 10 33 33 H 0.97003 * 119.99911 * 5.07518 * 16 14 13 34 34 H 1.09007 * 109.46717 * 300.00076 * 17 16 14 35 35 H 1.09005 * 109.47072 * 59.98769 * 17 16 14 36 36 H 1.08002 * 124.44741 * 315.25014 * 20 18 17 37 37 H 1.08003 * 124.44902 * 179.97438 * 21 20 18 38 38 H 1.08996 * 110.38951 * 224.75493 * 22 21 20 39 39 H 1.09001 * 110.47972 * 102.42041 * 22 21 20 40 40 H 1.08999 * 111.03595 * 334.58006 * 23 18 17 41 41 H 1.08989 * 111.04144 * 98.52416 * 23 18 17 42 42 H 1.08998 * 109.62972 * 291.47163 * 24 13 12 43 43 H 1.09002 * 109.62312 * 170.88979 * 24 13 12 44 44 H 1.09004 * 109.49584 * 307.21429 * 25 10 9 45 45 H 1.09003 * 109.49364 * 67.26414 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0068 10 7 4.0011 -2.5790 -0.0055 11 6 3.6497 -3.2605 1.2475 12 6 4.0150 -4.7446 1.1377 13 7 5.4293 -4.8502 0.7479 14 6 6.2824 -5.6279 1.4434 15 8 7.4252 -5.7750 1.0552 16 7 5.8687 -6.2428 2.5691 17 6 6.8234 -6.9971 3.3850 18 6 6.1019 -7.5903 4.5968 19 1 5.5574 -6.8122 5.1319 20 6 5.1616 -8.6906 4.1629 21 6 5.2633 -9.7311 4.9443 22 6 6.2889 -9.4985 6.0294 23 6 7.1125 -8.2854 5.5384 24 6 5.8880 -4.0839 -0.4207 25 6 5.4490 -2.6257 -0.2496 26 1 -0.4851 0.8401 0.0004 27 1 3.8711 -0.6820 -0.8993 28 1 3.8785 -0.6784 0.8807 29 1 4.2008 -2.8104 2.0732 30 1 2.5792 -3.1617 1.4275 31 1 3.3903 -5.2205 0.3819 32 1 3.8635 -5.2313 2.1013 33 1 4.9387 -6.1859 2.8392 34 1 7.2548 -7.8014 2.7890 35 1 7.6167 -6.3312 3.7249 36 1 4.4931 -8.6248 3.3172 37 1 4.6898 -10.6391 4.8304 38 1 6.9296 -10.3732 6.1401 39 1 5.7981 -9.2659 6.9745 40 1 7.9978 -8.6096 4.9914 41 1 7.3845 -7.6347 6.3694 42 1 5.4434 -4.4963 -1.3265 43 1 6.9748 -4.1336 -0.4875 44 1 5.6834 -2.0666 -1.1554 45 1 5.9749 -2.1840 0.5968 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883785282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:26 Heat of formation + Delta-G solvation = -16.735395 kcal Electronic energy + Delta-G solvation = -23628.770460 eV Core-core repulsion = 20259.870071 eV Total energy + Delta-G solvation = -3368.900389 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.51325 -39.84957 -39.00772 -35.97628 -35.70734 -34.39138 -32.22947 -30.95228 -30.20655 -29.62730 -27.28583 -25.22195 -24.59861 -23.39322 -22.16870 -21.64366 -20.39112 -19.64690 -19.14894 -18.89880 -17.47985 -16.93915 -16.67748 -16.59239 -16.27624 -16.02400 -15.65879 -15.30482 -15.25280 -14.90462 -14.77733 -14.44638 -14.06041 -13.62890 -13.15715 -13.03293 -12.88098 -12.82437 -12.74669 -12.52161 -12.35172 -12.24301 -12.09483 -12.08503 -11.96420 -11.88016 -11.83824 -11.41283 -11.21196 -10.77284 -10.25857 -9.80841 -9.59858 -9.05086 -8.27508 -6.30434 1.35827 1.36832 1.37442 1.46614 1.61067 2.08429 2.34624 2.85279 3.05036 3.14881 3.67135 3.71925 3.91146 3.94159 4.03934 4.14180 4.23863 4.31024 4.37046 4.40549 4.49853 4.57296 4.62397 4.72224 4.75811 4.80887 4.85521 4.93899 4.97227 4.98637 5.01985 5.05487 5.12231 5.21102 5.37848 5.41135 5.49932 5.53020 5.65629 5.85039 5.98917 6.01715 6.30059 6.59968 6.75799 6.90253 7.33310 7.49624 8.88421 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.023470 B = 0.003028 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.741377 B = 9244.911456 C = 9885.052946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.513 4.513 8 H 0.046 0.954 9 C 0.172 3.828 10 N -0.539 5.539 11 C 0.052 3.948 12 C 0.127 3.873 13 N -0.628 5.628 14 C 0.704 3.296 15 O -0.634 6.634 16 N -0.735 5.735 17 C 0.151 3.849 18 C -0.073 4.073 19 H 0.094 0.906 20 C -0.178 4.178 21 C -0.165 4.165 22 C -0.102 4.102 23 C -0.117 4.117 24 C 0.143 3.857 25 C 0.042 3.958 26 H 0.266 0.734 27 H 0.030 0.970 28 H -0.015 1.015 29 H 0.023 0.977 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.406 0.594 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.123 0.877 37 H 0.133 0.867 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.110 -16.915 11.289 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.186 4.186 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.551 4.551 8 H 0.064 0.936 9 C 0.045 3.955 10 N -0.263 5.263 11 C -0.077 4.077 12 C 0.004 3.996 13 N -0.365 5.365 14 C 0.406 3.594 15 O -0.516 6.516 16 N -0.393 5.393 17 C 0.027 3.973 18 C -0.092 4.092 19 H 0.112 0.888 20 C -0.196 4.196 21 C -0.183 4.183 22 C -0.139 4.139 23 C -0.155 4.155 24 C 0.019 3.981 25 C -0.087 4.087 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.002 0.998 29 H 0.041 0.959 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.245 0.755 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.140 0.860 37 H 0.151 0.849 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 13.575 -17.157 10.658 24.336 hybrid contribution -0.361 1.486 0.458 1.597 sum 13.213 -15.671 11.116 23.318 Atomic orbital electron populations 1.70031 1.07964 1.28039 1.52548 1.25759 0.95519 1.02847 0.94500 0.85790 0.79260 0.79143 0.79177 1.19096 1.20899 1.17903 1.21221 0.90724 0.93446 1.49736 0.93568 1.19944 0.94527 0.86068 0.95008 1.61802 1.12481 1.17276 1.34771 1.22323 1.01456 0.93963 0.89947 1.21804 0.80538 0.95642 1.01647 1.47414 1.09766 1.47787 1.31555 1.15974 0.83868 0.78957 0.80616 1.90853 1.19942 1.69028 1.71741 1.45227 1.13864 1.55814 1.24405 1.21247 0.91037 0.94260 0.90740 1.21276 0.95978 0.97355 0.94594 0.88836 1.23322 1.00324 0.95712 1.00197 1.23524 0.99478 0.98703 0.96607 1.21412 0.96216 0.98407 0.97843 1.22499 0.97402 0.96933 0.98662 1.21516 1.00224 0.89122 0.87222 1.22531 0.88056 0.96973 1.01179 0.92450 0.95186 0.99772 0.95871 0.90268 0.90201 0.87797 0.75520 0.92640 0.92318 0.85957 0.84947 0.90228 0.89798 0.90706 0.89437 0.90460 0.89111 0.88923 0.95845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.52 13.96 21.44 0.30 -57.22 16 2 C 0.01 0.65 5.47 84.65 0.46 1.11 16 3 Si 0.94 43.15 27.47 68.60 1.88 45.03 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.03 6.54 99.48 0.65 -10.38 16 7 C -0.51 -28.44 8.96 25.60 0.23 -28.21 16 8 H 0.05 2.82 7.38 -2.91 -0.02 2.80 16 9 C 0.17 7.95 3.79 85.56 0.32 8.27 16 10 N -0.54 -21.16 4.62 -899.81 -4.16 -25.32 16 11 C 0.05 1.82 5.46 86.38 0.47 2.29 16 12 C 0.13 3.36 6.59 86.35 0.57 3.93 16 13 N -0.63 -18.11 3.01 -835.93 -2.52 -20.62 16 14 C 0.70 20.92 8.31 179.06 1.49 22.41 16 15 O -0.63 -23.31 15.83 -3.99 -0.06 -23.37 16 16 N -0.74 -16.14 5.34 -478.53 -2.56 -18.70 16 17 C 0.15 2.92 5.00 86.38 0.43 3.35 16 18 C -0.07 -1.02 2.94 -10.86 -0.03 -1.06 16 19 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 20 C -0.18 -2.54 9.88 26.27 0.26 -2.28 16 21 C -0.17 -2.08 10.77 26.27 0.28 -1.80 16 22 C -0.10 -1.06 6.81 30.53 0.21 -0.85 16 23 C -0.12 -1.32 6.71 31.70 0.21 -1.11 16 24 C 0.14 4.20 6.58 86.35 0.57 4.77 16 25 C 0.04 1.35 5.62 86.38 0.49 1.84 16 26 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 27 H 0.03 1.37 7.41 -2.39 -0.02 1.35 16 28 H -0.02 -0.72 7.17 -2.38 -0.02 -0.74 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 3.13 6.67 -2.39 -0.02 3.11 16 31 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.10 2.04 5.63 -2.38 -0.01 2.02 16 33 H 0.41 7.15 5.90 -92.71 -0.55 6.61 16 34 H 0.06 1.22 8.13 -2.38 -0.02 1.20 16 35 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.12 1.76 8.06 -2.91 -0.02 1.73 16 37 H 0.13 1.38 8.06 -2.91 -0.02 1.36 16 38 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 0.88 7.91 -2.39 -0.02 0.86 16 41 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.09 2.69 7.09 -2.39 -0.02 2.67 16 44 H 0.09 2.80 7.99 -2.38 -0.02 2.78 16 45 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -69.60 352.86 -0.78 -70.39 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.37 Total: 17.15 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 5.96 Total: 12.66 kcal Atomic # 7 Polarization: -112.92 SS G_CDS: -8.93 Total: -121.85 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.06 Total: -23.37 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.03 kcal Total: -69.60 -0.78 -70.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883785282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.651 kcal (2) G-P(sol) polarization free energy of solvation -69.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds