Wall clock time and date at job start Tue Mar 31 2020 07:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99965 * 2 1 4 4 H 1.48500 * 109.47208 * 269.99721 * 3 2 1 5 5 H 1.48502 * 109.47613 * 30.00002 * 3 2 1 6 6 H 1.48503 * 109.46906 * 150.00039 * 3 2 1 7 7 C 1.37874 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99709 * 173.55123 * 7 2 1 9 9 C 1.50702 * 120.00215 * 353.56186 * 7 2 1 10 10 C 1.52997 * 115.55389 * 85.39886 * 9 7 2 11 11 N 1.46503 * 109.47178 * 65.14251 * 10 9 7 12 12 C 1.34771 * 119.99994 * 178.28675 * 11 10 9 13 13 O 1.21583 * 120.00113 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99751 * 179.97438 * 12 11 10 15 15 C 1.46507 * 119.99842 * 180.02562 * 14 12 11 16 16 C 1.50291 * 110.28694 * 281.19705 * 15 14 12 17 17 C 1.55800 * 103.80491 * 279.70511 * 16 15 14 18 18 C 1.56264 * 105.87321 * 352.15327 * 17 16 15 19 19 C 1.51141 * 101.82990 * 335.13120 * 18 17 16 20 20 H 1.08999 * 109.96253 * 291.06953 * 19 18 17 21 21 N 1.44509 * 125.52026 * 156.17814 * 19 18 17 22 22 C 1.50160 * 102.97491 * 203.03468 * 21 19 18 23 23 C 1.50950 * 110.00638 * 61.01361 * 15 14 12 24 24 C 1.52996 * 117.49323 * 231.07238 * 9 7 2 25 25 C 1.53002 * 117.49165 * 299.72801 * 9 7 2 26 26 H 0.97001 * 119.99649 * 5.06924 * 1 2 3 27 27 H 1.09000 * 109.47354 * 305.14400 * 10 9 7 28 28 H 1.08997 * 109.46837 * 185.14525 * 10 9 7 29 29 H 0.97003 * 119.99850 * 358.28925 * 11 10 9 30 30 H 0.97003 * 120.00093 * 0.02562 * 14 12 11 31 31 H 1.09001 * 111.40901 * 160.81614 * 16 15 14 32 32 H 1.08998 * 110.10658 * 37.96217 * 16 15 14 33 33 H 1.09004 * 110.17181 * 233.04751 * 17 16 15 34 34 H 1.08999 * 110.17350 * 111.25779 * 17 16 15 35 35 H 1.08999 * 110.95441 * 216.99875 * 18 17 16 36 36 H 1.08992 * 110.98886 * 93.28285 * 18 17 16 37 37 H 1.00906 * 111.00500 * 84.19690 * 21 19 18 38 38 H 1.08993 * 110.08405 * 267.77375 * 22 21 19 39 39 H 1.09004 * 110.13402 * 146.22624 * 22 21 19 40 40 H 1.09007 * 110.73169 * 324.17913 * 23 15 14 41 41 H 1.08997 * 110.73142 * 201.06595 * 23 15 14 42 42 H 1.09004 * 117.49606 * 214.99387 * 24 9 7 43 43 H 1.09002 * 117.50467 * 0.02562 * 24 9 7 44 44 H 1.08998 * 117.50419 * 359.97438 * 25 9 7 45 45 H 1.09005 * 117.49641 * 144.97877 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1971 -0.1045 9 6 1.2581 -2.4950 0.1475 10 6 0.7020 -3.0869 -1.1492 11 7 1.8111 -3.4600 -2.0307 12 6 1.5598 -4.0371 -3.2224 13 8 0.4128 -4.2477 -3.5661 14 7 2.5801 -4.3799 -4.0336 15 6 2.3070 -5.0067 -5.3293 16 6 1.9932 -6.4651 -5.1468 17 6 3.3937 -7.1307 -4.9953 18 6 4.4360 -6.0090 -5.3075 19 6 3.6328 -5.0747 -6.1830 20 1 3.4285 -5.5482 -7.1433 21 7 3.8977 -3.6669 -6.3732 22 6 2.5643 -3.1283 -6.8055 23 6 1.4892 -4.0757 -6.1913 24 6 1.7470 -3.4728 1.2178 25 6 0.4417 -2.7005 1.4251 26 1 -0.4850 0.8368 -0.0742 27 1 0.0754 -2.3469 -1.6470 28 1 0.1074 -3.9709 -0.9192 29 1 2.7262 -3.2917 -1.7566 30 1 3.4953 -4.2115 -3.7595 31 1 1.4700 -6.8710 -6.0126 32 1 1.4021 -6.6109 -4.2427 33 1 3.4993 -7.9503 -5.7061 34 1 3.5282 -7.4958 -3.9771 35 1 5.2916 -6.4118 -5.8494 36 1 4.7562 -5.5083 -4.3939 37 1 4.5947 -3.5235 -7.0886 38 1 2.4924 -3.1357 -7.8930 39 1 2.4291 -2.1145 -6.4285 40 1 0.7796 -3.5124 -5.5852 41 1 0.9711 -4.6299 -6.9739 42 1 1.6724 -4.5379 0.9982 43 1 2.6082 -3.1751 1.8160 44 1 0.4448 -1.8950 2.1594 45 1 -0.4918 -3.2571 1.3417 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891869749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:18 Heat of formation + Delta-G solvation = 14.061863 kcal Electronic energy + Delta-G solvation = -24766.529448 eV Core-core repulsion = 21398.964528 eV Total energy + Delta-G solvation = -3367.564920 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.09695 -38.53017 -36.59246 -34.88214 -33.16452 -32.78406 -31.91635 -30.31817 -27.12332 -26.81163 -25.89870 -24.90128 -21.58118 -21.22503 -20.75685 -20.31121 -19.42886 -18.88085 -17.65586 -16.41852 -16.30682 -15.77196 -15.20185 -14.97175 -14.63488 -14.30567 -14.23039 -13.87213 -13.43851 -13.10185 -13.05716 -12.59888 -12.44155 -12.09564 -11.91787 -11.69436 -11.53061 -11.37089 -11.22229 -10.96424 -10.91749 -10.84820 -10.63639 -10.48725 -10.23646 -10.19924 -9.58584 -9.31037 -8.90290 -8.72495 -8.62440 -8.44500 -8.18948 -7.84949 -6.03021 -4.11011 3.28591 3.29304 3.36606 3.38707 3.72575 3.96093 4.27311 4.39435 4.63795 4.85473 4.89816 4.96231 5.06398 5.19844 5.23328 5.25436 5.28026 5.43402 5.55640 5.61449 5.67884 5.73996 5.92574 5.96748 6.02150 6.06711 6.09915 6.24726 6.39761 6.42778 6.53256 6.62069 6.66787 6.74435 6.93661 7.09780 7.13619 7.19242 7.43512 7.52246 7.54563 7.75692 7.86316 8.39660 8.83069 8.89991 9.37708 9.55352 11.04857 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.004479 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.338127 B = 6250.481893 C = 6923.616862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.497 4.497 8 H 0.059 0.941 9 C 0.028 3.972 10 C 0.185 3.815 11 N -0.722 5.722 12 C 0.700 3.300 13 O -0.606 6.606 14 N -0.728 5.728 15 C 0.193 3.807 16 C -0.120 4.120 17 C -0.118 4.118 18 C -0.104 4.104 19 C 0.036 3.964 20 H 0.052 0.948 21 N -0.646 5.646 22 C 0.042 3.958 23 C -0.131 4.131 24 C -0.211 4.211 25 C -0.148 4.148 26 H 0.261 0.739 27 H 0.068 0.932 28 H 0.032 0.968 29 H 0.394 0.606 30 H 0.395 0.605 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.333 0.667 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.960 -11.251 -12.423 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.535 4.535 8 H 0.077 0.923 9 C 0.028 3.972 10 C 0.061 3.939 11 N -0.374 5.374 12 C 0.400 3.600 13 O -0.487 6.487 14 N -0.386 5.386 15 C 0.105 3.895 16 C -0.159 4.159 17 C -0.156 4.156 18 C -0.142 4.142 19 C -0.076 4.076 20 H 0.070 0.930 21 N -0.274 5.274 22 C -0.086 4.086 23 C -0.170 4.170 24 C -0.248 4.248 25 C -0.186 4.186 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.228 0.772 30 H 0.231 0.769 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.148 0.852 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.707 -11.055 -11.922 17.588 hybrid contribution 1.144 0.871 -0.752 1.623 sum 7.851 -10.184 -12.674 18.055 Atomic orbital electron populations 1.69984 1.05870 1.26821 1.48426 1.24972 0.94778 0.98877 0.94363 0.86644 0.79919 0.83641 0.78117 1.20704 1.21227 1.19857 1.20322 0.92772 0.88625 1.51795 0.92292 1.19052 0.98490 0.93872 0.85823 1.20785 0.86685 0.96448 0.89988 1.45137 1.11120 1.63776 1.17371 1.16021 0.84637 0.78678 0.80660 1.90831 1.19982 1.62251 1.75612 1.44991 1.08421 1.67078 1.18080 1.20461 0.94615 0.91335 0.83082 1.21862 0.97023 0.93914 1.03140 1.22853 0.93605 0.97291 1.01837 1.21821 0.97268 0.95478 0.99625 1.22774 0.96995 0.90105 0.97695 0.93048 1.62765 1.07437 1.10629 1.46612 1.23496 0.87756 0.99997 0.97356 1.22262 0.97975 0.97839 0.98891 1.23011 0.98593 0.95671 1.07517 1.22484 0.92262 1.01061 1.02815 0.92923 0.91398 0.94945 0.77237 0.76948 0.90990 0.90301 0.91698 0.91301 0.91565 0.90525 0.85163 0.93843 0.89950 0.88270 0.91146 0.91695 0.90459 0.89884 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.61 12.91 55.43 0.72 -23.89 16 2 C 0.07 1.99 5.39 -17.82 -0.10 1.89 16 3 Si 0.89 20.85 29.55 -169.99 -5.02 15.83 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.50 -12.97 8.63 -34.44 -0.30 -13.26 16 8 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 9 C 0.03 0.68 1.38 -155.66 -0.21 0.46 16 10 C 0.18 4.31 5.50 -4.04 -0.02 4.28 16 11 N -0.72 -14.51 5.48 -65.23 -0.36 -14.87 16 12 C 0.70 13.56 7.80 -86.92 -0.68 12.88 16 13 O -0.61 -13.71 14.39 5.29 0.08 -13.64 16 14 N -0.73 -10.92 4.34 -52.16 -0.23 -11.15 16 15 C 0.19 2.52 0.49 -131.55 -0.06 2.45 16 16 C -0.12 -1.44 6.22 -26.59 -0.17 -1.61 16 17 C -0.12 -1.11 6.90 -23.48 -0.16 -1.27 16 18 C -0.10 -0.95 6.42 -25.92 -0.17 -1.12 16 19 C 0.04 0.37 3.03 -67.28 -0.20 0.17 16 20 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 21 N -0.65 -6.97 7.24 -102.35 -0.74 -7.71 16 22 C 0.04 0.49 7.57 -0.44 0.00 0.49 16 23 C -0.13 -1.79 6.11 -26.21 -0.16 -1.95 16 24 C -0.21 -4.45 9.96 -26.69 -0.27 -4.71 16 25 C -0.15 -3.43 9.42 -26.69 -0.25 -3.68 16 26 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 27 H 0.07 1.83 8.14 -51.93 -0.42 1.40 16 28 H 0.03 0.75 8.09 -51.93 -0.42 0.33 16 29 H 0.39 7.37 8.38 -40.82 -0.34 7.03 16 30 H 0.40 5.44 7.05 -40.82 -0.29 5.15 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.16 7.59 -51.93 -0.39 0.76 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.76 6.72 -51.93 -0.35 0.41 16 37 H 0.33 2.91 8.91 -39.29 -0.35 2.56 16 38 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.10 1.73 6.11 -51.93 -0.32 1.42 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 44 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 45 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 354.88 15.07 5.35 5.35 Total: -1.00 -29.62 354.88 -10.46 -40.08 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -7.50 Total: 14.97 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -2.75 Total: -4.97 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.61 Total: -57.63 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.08 Total: -13.64 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.62 -10.46 -40.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891869749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.145 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds