Wall clock time and date at job start Tue Mar 31 2020 07:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99965 * 2 1 4 4 H 1.48500 * 109.47208 * 269.99721 * 3 2 1 5 5 H 1.48502 * 109.47613 * 30.00002 * 3 2 1 6 6 H 1.48503 * 109.46906 * 150.00039 * 3 2 1 7 7 C 1.37874 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99709 * 173.55123 * 7 2 1 9 9 C 1.50702 * 120.00215 * 353.56186 * 7 2 1 10 10 C 1.52997 * 115.55389 * 85.39886 * 9 7 2 11 11 N 1.46503 * 109.47178 * 65.14251 * 10 9 7 12 12 C 1.34771 * 119.99994 * 178.28675 * 11 10 9 13 13 O 1.21583 * 120.00113 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99751 * 179.97438 * 12 11 10 15 15 C 1.46507 * 119.99842 * 180.02562 * 14 12 11 16 16 C 1.50291 * 110.28694 * 281.19705 * 15 14 12 17 17 C 1.55800 * 103.80491 * 279.70511 * 16 15 14 18 18 C 1.56264 * 105.87321 * 352.15327 * 17 16 15 19 19 C 1.51141 * 101.82990 * 335.13120 * 18 17 16 20 20 H 1.08999 * 109.96253 * 291.06953 * 19 18 17 21 21 N 1.44509 * 125.52026 * 156.17814 * 19 18 17 22 22 C 1.50160 * 102.97491 * 203.03468 * 21 19 18 23 23 C 1.50950 * 110.00638 * 61.01361 * 15 14 12 24 24 C 1.52996 * 117.49323 * 231.07238 * 9 7 2 25 25 C 1.53002 * 117.49165 * 299.72801 * 9 7 2 26 26 H 0.97001 * 119.99649 * 5.06924 * 1 2 3 27 27 H 1.09000 * 109.47354 * 305.14400 * 10 9 7 28 28 H 1.08997 * 109.46837 * 185.14525 * 10 9 7 29 29 H 0.97003 * 119.99850 * 358.28925 * 11 10 9 30 30 H 0.97003 * 120.00093 * 0.02562 * 14 12 11 31 31 H 1.09001 * 111.40901 * 160.81614 * 16 15 14 32 32 H 1.08998 * 110.10658 * 37.96217 * 16 15 14 33 33 H 1.09004 * 110.17181 * 233.04751 * 17 16 15 34 34 H 1.08999 * 110.17350 * 111.25779 * 17 16 15 35 35 H 1.08999 * 110.95441 * 216.99875 * 18 17 16 36 36 H 1.08992 * 110.98886 * 93.28285 * 18 17 16 37 37 H 1.00906 * 111.00500 * 84.19690 * 21 19 18 38 38 H 1.08993 * 110.08405 * 267.77375 * 22 21 19 39 39 H 1.09004 * 110.13402 * 146.22624 * 22 21 19 40 40 H 1.09007 * 110.73169 * 324.17913 * 23 15 14 41 41 H 1.08997 * 110.73142 * 201.06595 * 23 15 14 42 42 H 1.09004 * 117.49606 * 214.99387 * 24 9 7 43 43 H 1.09002 * 117.50467 * 0.02562 * 24 9 7 44 44 H 1.08998 * 117.50419 * 359.97438 * 25 9 7 45 45 H 1.09005 * 117.49641 * 144.97877 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1971 -0.1045 9 6 1.2581 -2.4950 0.1475 10 6 0.7020 -3.0869 -1.1492 11 7 1.8111 -3.4600 -2.0307 12 6 1.5598 -4.0371 -3.2224 13 8 0.4128 -4.2477 -3.5661 14 7 2.5801 -4.3799 -4.0336 15 6 2.3070 -5.0067 -5.3293 16 6 1.9932 -6.4651 -5.1468 17 6 3.3937 -7.1307 -4.9953 18 6 4.4360 -6.0090 -5.3075 19 6 3.6328 -5.0747 -6.1830 20 1 3.4285 -5.5482 -7.1433 21 7 3.8977 -3.6669 -6.3732 22 6 2.5643 -3.1283 -6.8055 23 6 1.4892 -4.0757 -6.1913 24 6 1.7470 -3.4728 1.2178 25 6 0.4417 -2.7005 1.4251 26 1 -0.4850 0.8368 -0.0742 27 1 0.0754 -2.3469 -1.6470 28 1 0.1074 -3.9709 -0.9192 29 1 2.7262 -3.2917 -1.7566 30 1 3.4953 -4.2115 -3.7595 31 1 1.4700 -6.8710 -6.0126 32 1 1.4021 -6.6109 -4.2427 33 1 3.4993 -7.9503 -5.7061 34 1 3.5282 -7.4958 -3.9771 35 1 5.2916 -6.4118 -5.8494 36 1 4.7562 -5.5083 -4.3939 37 1 4.5947 -3.5235 -7.0886 38 1 2.4924 -3.1357 -7.8930 39 1 2.4291 -2.1145 -6.4285 40 1 0.7796 -3.5124 -5.5852 41 1 0.9711 -4.6299 -6.9739 42 1 1.6724 -4.5379 0.9982 43 1 2.6082 -3.1751 1.8160 44 1 0.4448 -1.8950 2.1594 45 1 -0.4918 -3.2571 1.3417 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891869749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:18 Heat of formation + Delta-G solvation = -6.941723 kcal Electronic energy + Delta-G solvation = -24767.440232 eV Core-core repulsion = 21398.964528 eV Total energy + Delta-G solvation = -3368.475704 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.17389 -40.03391 -38.39183 -35.77621 -34.86844 -34.09102 -33.88898 -31.39203 -28.23888 -27.91259 -27.50983 -26.67115 -23.00170 -22.57736 -22.08915 -21.25980 -21.15498 -20.22512 -19.12691 -18.06499 -17.36899 -17.04449 -16.69312 -16.36791 -16.12729 -15.74923 -15.61394 -15.43855 -14.81937 -14.42349 -14.26067 -14.04073 -13.72815 -13.45747 -13.33287 -12.98083 -12.91611 -12.84724 -12.78979 -12.33622 -12.29200 -12.16820 -12.02957 -11.80605 -11.48342 -11.45788 -11.27994 -10.86529 -10.80466 -10.44478 -10.13620 -9.99965 -9.54532 -9.46345 -8.08194 -6.20884 1.42311 1.44440 1.53115 1.91450 2.39463 2.43552 2.79629 3.19980 3.32307 3.47887 3.68702 3.76487 3.97206 4.09778 4.14738 4.27130 4.33545 4.35095 4.41378 4.58160 4.67057 4.67700 4.71970 4.76581 4.88170 4.88865 4.98170 5.00258 5.05123 5.08238 5.19638 5.20714 5.28357 5.31160 5.41137 5.61394 5.63178 5.72501 5.76426 5.82598 5.91272 6.25871 6.38980 6.48435 6.85629 7.35710 7.48128 7.83052 8.99486 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.004479 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.338127 B = 6250.481893 C = 6923.616862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.950 3.050 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.501 4.501 8 H 0.062 0.938 9 C 0.005 3.995 10 C 0.205 3.795 11 N -0.720 5.720 12 C 0.697 3.303 13 O -0.642 6.642 14 N -0.709 5.709 15 C 0.172 3.828 16 C -0.122 4.122 17 C -0.110 4.110 18 C -0.100 4.100 19 C 0.053 3.947 20 H 0.071 0.929 21 N -0.656 5.656 22 C 0.048 3.952 23 C -0.135 4.135 24 C -0.175 4.175 25 C -0.158 4.158 26 H 0.258 0.742 27 H 0.022 0.978 28 H 0.029 0.971 29 H 0.403 0.597 30 H 0.403 0.597 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.349 0.651 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.800 -12.565 -13.704 21.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.176 4.176 3 Si 0.776 3.224 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.539 4.539 8 H 0.080 0.920 9 C 0.004 3.996 10 C 0.079 3.921 11 N -0.373 5.373 12 C 0.397 3.603 13 O -0.525 6.525 14 N -0.365 5.365 15 C 0.085 3.915 16 C -0.161 4.161 17 C -0.148 4.148 18 C -0.138 4.138 19 C -0.058 4.058 20 H 0.089 0.911 21 N -0.286 5.286 22 C -0.080 4.080 23 C -0.174 4.174 24 C -0.212 4.212 25 C -0.196 4.196 26 H 0.067 0.933 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.237 0.763 30 H 0.240 0.760 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.167 0.833 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.083 0.917 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.619 -12.387 -13.224 20.514 hybrid contribution 0.234 1.237 -0.404 1.322 sum 9.853 -11.150 -13.628 20.177 Atomic orbital electron populations 1.70115 1.07285 1.27247 1.49987 1.25698 0.95438 1.02052 0.94417 0.85688 0.79006 0.79857 0.77874 1.20791 1.21466 1.18703 1.20626 0.93017 0.89580 1.50684 0.91993 1.19072 0.99705 0.94497 0.86325 1.20304 0.87007 0.94826 0.89921 1.44934 1.10653 1.64134 1.17544 1.16180 0.84959 0.78456 0.80682 1.90805 1.21844 1.63584 1.76255 1.44869 1.07672 1.65837 1.18125 1.20823 0.96914 0.91536 0.82239 1.21869 0.98538 0.93586 1.02071 1.22823 0.91661 0.97846 1.02445 1.21847 0.97794 0.94886 0.99315 1.22781 0.94943 0.90105 0.97979 0.91127 1.62685 1.07220 1.11035 1.47628 1.23371 0.87681 0.98255 0.98709 1.22236 0.97952 0.98162 0.99061 1.22989 0.97344 0.96203 1.04690 1.22424 0.93722 1.01379 1.02119 0.93289 0.96002 0.95282 0.76270 0.75973 0.89581 0.93765 0.89266 0.91689 0.88929 0.91359 0.83318 0.91086 0.92185 0.92906 0.89479 0.89446 0.89521 0.91737 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.59 12.91 21.45 0.28 -52.31 16 2 C 0.02 1.32 5.39 84.65 0.46 1.78 16 3 Si 0.95 43.13 29.55 68.60 2.03 45.15 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 6 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.50 -26.19 8.63 25.60 0.22 -25.97 16 8 H 0.06 3.13 7.82 -2.91 -0.02 3.11 16 9 C 0.00 0.23 1.38 -52.93 -0.07 0.16 16 10 C 0.20 9.85 5.50 86.38 0.48 10.33 16 11 N -0.72 -29.47 5.48 -478.55 -2.62 -32.09 16 12 C 0.70 27.78 7.80 179.06 1.40 29.17 16 13 O -0.64 -30.46 14.39 -3.98 -0.06 -30.52 16 14 N -0.71 -21.10 4.34 -437.21 -1.90 -23.00 16 15 C 0.17 4.31 0.49 3.77 0.00 4.31 16 16 C -0.12 -2.77 6.22 30.69 0.19 -2.58 16 17 C -0.11 -1.75 6.90 32.70 0.23 -1.52 16 18 C -0.10 -1.48 6.42 31.12 0.20 -1.28 16 19 C 0.05 0.93 3.03 46.47 0.14 1.07 16 20 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 21 N -0.66 -12.44 7.24 -477.72 -3.46 -15.90 16 22 C 0.05 1.06 7.57 86.67 0.66 1.72 16 23 C -0.14 -3.67 6.11 30.93 0.19 -3.48 16 24 C -0.18 -7.13 9.96 30.62 0.30 -6.83 16 25 C -0.16 -7.38 9.42 30.62 0.29 -7.09 16 26 H 0.26 14.42 8.32 -92.71 -0.77 13.65 16 27 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.03 1.39 8.09 -2.39 -0.02 1.37 16 29 H 0.40 14.96 8.38 -92.71 -0.78 14.18 16 30 H 0.40 10.67 7.05 -92.71 -0.65 10.01 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.31 7.59 -2.39 -0.02 1.29 16 33 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 1.14 6.72 -2.39 -0.02 1.13 16 37 H 0.35 4.88 8.91 -89.69 -0.80 4.08 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.05 1.94 6.11 -2.38 -0.01 1.93 16 41 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 43 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 44 H 0.06 3.22 8.14 -2.39 -0.02 3.20 16 45 H 0.07 3.13 8.14 -2.38 -0.02 3.11 16 Total: -1.00 -66.49 354.88 -2.28 -68.77 By element: Atomic # 1 Polarization: 41.32 SS G_CDS: -1.22 Total: 40.10 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 4.67 Total: -0.20 kcal Atomic # 7 Polarization: -115.60 SS G_CDS: -7.70 Total: -123.30 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.06 Total: -30.52 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -66.49 -2.28 -68.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891869749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.828 kcal (2) G-P(sol) polarization free energy of solvation -66.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds