Wall clock time and date at job start Tue Mar 31 2020 07:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99974 * 2 1 4 4 H 1.48502 * 109.46778 * 270.85266 * 3 2 1 5 5 H 1.48497 * 109.47033 * 30.84632 * 3 2 1 6 6 H 1.48497 * 109.47184 * 150.85183 * 3 2 1 7 7 C 1.37878 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00438 * 358.98325 * 7 2 1 9 9 C 1.50704 * 119.99718 * 178.98305 * 7 2 1 10 10 C 1.52995 * 115.55074 * 87.54179 * 9 7 2 11 11 N 1.46500 * 109.47253 * 34.55872 * 10 9 7 12 12 C 1.34774 * 119.99999 * 184.80505 * 11 10 9 13 13 O 1.21588 * 119.99867 * 4.43743 * 12 11 10 14 14 N 1.34771 * 120.00018 * 184.44799 * 12 11 10 15 15 C 1.46506 * 120.00216 * 174.94130 * 14 12 11 16 16 C 1.54198 * 111.81710 * 299.29784 * 15 14 12 17 17 C 1.54848 * 104.32336 * 261.02492 * 16 15 14 18 18 C 1.54862 * 102.73598 * 321.93989 * 17 16 15 19 19 C 1.54171 * 104.26837 * 38.19733 * 18 17 16 20 20 H 1.08995 * 111.21759 * 98.04432 * 19 18 17 21 21 N 1.47813 * 109.09540 * 221.08570 * 19 18 17 22 22 C 1.48515 * 105.85660 * 89.00391 * 21 19 18 23 23 C 1.54545 * 112.58334 * 61.99351 * 15 14 12 24 24 C 1.53009 * 117.51541 * 233.24161 * 9 7 2 25 25 C 1.53000 * 59.99888 * 107.48249 * 24 9 7 26 26 H 0.97000 * 120.00465 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47203 * 274.55534 * 10 9 7 28 28 H 1.09011 * 109.47091 * 154.55794 * 10 9 7 29 29 H 0.96997 * 119.99736 * 4.79674 * 11 10 9 30 30 H 0.97000 * 120.00313 * 354.93390 * 14 12 11 31 31 H 1.08998 * 110.46405 * 142.30878 * 16 15 14 32 32 H 1.09005 * 110.57211 * 19.78363 * 16 15 14 33 33 H 1.09005 * 110.75684 * 203.62914 * 17 16 15 34 34 H 1.08994 * 110.92106 * 80.32773 * 17 16 15 35 35 H 1.09007 * 110.47352 * 279.50044 * 18 17 16 36 36 H 1.08996 * 110.47025 * 156.89591 * 18 17 16 37 37 H 1.00899 * 111.00373 * 209.54092 * 21 19 18 38 38 H 1.08998 * 110.66927 * 157.93809 * 22 21 19 39 39 H 1.08995 * 110.67199 * 281.07766 * 22 21 19 40 40 H 1.09002 * 110.70410 * 262.13237 * 23 15 14 41 41 H 1.09005 * 110.70189 * 25.18199 * 23 15 14 42 42 H 1.08999 * 117.49475 * 214.97303 * 24 9 7 43 43 H 1.09003 * 117.49707 * 359.97438 * 24 9 7 44 44 H 1.09007 * 117.49996 * 252.51105 * 25 24 9 45 45 H 1.08993 * 117.50184 * 107.49341 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4785 2.0568 -1.4000 5 1 1.4556 2.6474 0.7179 6 1 3.5555 1.4351 0.6819 7 6 2.0045 -1.1941 0.0005 8 1 1.4647 -2.1293 0.0175 9 6 3.5114 -1.1941 -0.0226 10 6 4.1924 -1.1220 1.3455 11 7 3.3918 -1.8558 2.3288 12 6 3.7476 -1.8476 3.6287 13 8 4.6848 -1.1668 3.9981 14 7 3.0648 -2.5943 4.5190 15 6 3.5182 -2.6726 5.9099 16 6 4.9378 -3.2650 6.0174 17 6 4.7060 -4.7505 6.3881 18 6 3.5035 -4.6760 7.3610 19 6 2.6007 -3.5770 6.7658 20 1 1.7928 -4.0076 6.1743 21 7 2.0725 -2.7385 7.8626 22 6 3.0703 -1.6569 8.0631 23 6 3.4998 -1.2993 6.6184 24 6 4.2015 -2.0163 -1.1129 25 6 4.2000 -0.4884 -1.1926 26 1 -0.4851 0.8400 -0.0004 27 1 4.2802 -0.0801 1.6532 28 1 5.1855 -1.5668 1.2809 29 1 2.6055 -2.3475 2.0442 30 1 2.2730 -3.0797 4.2389 31 1 5.5029 -2.7604 6.8010 32 1 5.4585 -3.1873 5.0629 33 1 5.5817 -5.1652 6.8873 34 1 4.4527 -5.3370 5.5050 35 1 3.8379 -4.3952 8.3598 36 1 2.9759 -5.6293 7.3886 37 1 1.1693 -2.3575 7.6237 38 1 2.6127 -0.7972 8.5524 39 1 3.9215 -2.0206 8.6386 40 1 4.4925 -0.8490 6.6118 41 1 2.7735 -0.6343 6.1511 42 1 5.1407 -2.5059 -0.8554 43 1 3.5657 -2.5577 -1.8134 44 1 3.5630 -0.0243 -1.9457 45 1 5.1381 0.0273 -0.9876 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891869757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:20 Heat of formation + Delta-G solvation = -2.796170 kcal Electronic energy + Delta-G solvation = -24709.677537 eV Core-core repulsion = 21341.381598 eV Total energy + Delta-G solvation = -3368.295939 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.69105 -38.75788 -37.03763 -34.31070 -33.42246 -33.18095 -32.19986 -30.25156 -27.36881 -26.40503 -26.01864 -25.00562 -21.76270 -21.73175 -21.31507 -19.92243 -19.45387 -18.99725 -17.42844 -17.26153 -16.43582 -15.62751 -15.11703 -14.89286 -14.59160 -14.48113 -14.28540 -13.94806 -13.91546 -13.15697 -12.95123 -12.84482 -12.50785 -12.32669 -12.09197 -11.82040 -11.72235 -11.38689 -11.19714 -11.11509 -10.83958 -10.76581 -10.67562 -10.58459 -10.51929 -10.20270 -9.71728 -9.52191 -9.17902 -8.84569 -8.77587 -8.67538 -8.61921 -8.00529 -6.22506 -4.27713 3.16252 3.26102 3.36124 3.42786 3.75936 3.94937 4.36259 4.48584 4.53852 4.71571 4.85051 4.94958 5.08664 5.11427 5.16396 5.24992 5.29908 5.35998 5.54101 5.59984 5.68518 5.72639 5.87576 5.88991 5.95962 5.98322 6.07416 6.08295 6.22548 6.25736 6.28771 6.30732 6.43861 6.52682 6.59993 6.70526 6.88256 6.93464 7.06462 7.19463 7.31512 7.52427 7.65485 8.34791 8.69021 8.77036 9.21774 9.41629 10.88020 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021208 B = 0.004368 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.939079 B = 6408.096243 C = 6874.702626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.085 3.915 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.255 1.255 7 C -0.492 4.492 8 H 0.078 0.922 9 C -0.016 4.016 10 C 0.173 3.827 11 N -0.715 5.715 12 C 0.700 3.300 13 O -0.603 6.603 14 N -0.739 5.739 15 C 0.170 3.830 16 C -0.118 4.118 17 C -0.128 4.128 18 C -0.106 4.106 19 C 0.067 3.933 20 H 0.086 0.914 21 N -0.666 5.666 22 C 0.042 3.958 23 C -0.153 4.153 24 C -0.179 4.179 25 C -0.196 4.196 26 H 0.266 0.734 27 H 0.059 0.941 28 H 0.041 0.959 29 H 0.406 0.594 30 H 0.394 0.606 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.338 0.662 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.969 -7.443 12.964 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.119 4.119 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.179 1.179 7 C -0.529 4.529 8 H 0.096 0.904 9 C -0.017 4.017 10 C 0.048 3.952 11 N -0.369 5.369 12 C 0.400 3.600 13 O -0.483 6.483 14 N -0.395 5.395 15 C 0.081 3.919 16 C -0.157 4.157 17 C -0.166 4.166 18 C -0.144 4.144 19 C -0.044 4.044 20 H 0.104 0.896 21 N -0.293 5.293 22 C -0.088 4.088 23 C -0.193 4.193 24 C -0.216 4.216 25 C -0.234 4.234 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.243 0.757 30 H 0.228 0.772 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.154 0.846 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.855 -7.148 13.841 17.019 hybrid contribution -0.570 1.261 -1.322 1.914 sum 6.285 -5.887 12.519 15.195 Atomic orbital electron populations 1.69880 1.06383 1.27341 1.49376 1.24942 0.94522 0.99148 0.93305 0.86876 0.80907 0.83193 0.78370 1.20440 1.22220 1.17935 1.20112 0.86073 0.94372 1.52359 0.90388 1.19638 0.95376 1.00478 0.86196 1.20856 0.91273 0.95379 0.87683 1.45109 1.32177 1.54958 1.04691 1.16000 0.82553 0.80260 0.81201 1.90843 1.32193 1.46109 1.79179 1.45073 1.32113 1.53763 1.08507 1.21674 0.94707 0.94924 0.80612 1.22645 0.95657 0.94775 1.02592 1.22552 0.98027 0.96879 0.99121 1.22296 0.95424 0.97392 0.99287 1.23052 0.96542 0.94122 0.90707 0.89618 1.62779 1.05324 1.20517 1.40634 1.23119 0.96031 0.93517 0.96090 1.23413 1.03560 0.96922 0.95410 1.22906 1.01011 0.92935 1.04730 1.22944 1.01493 0.95015 1.03918 0.92464 0.92278 0.94049 0.75738 0.77160 0.91066 0.90569 0.91535 0.91522 0.90601 0.91487 0.84598 0.90643 0.90142 0.89820 0.91291 0.90869 0.89506 0.89273 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.74 13.96 55.43 0.77 -24.97 16 2 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.88 21.43 25.11 -169.99 -4.27 17.16 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.26 -6.08 5.33 56.52 0.30 -5.78 16 7 C -0.49 -12.53 7.86 -34.44 -0.27 -12.80 16 8 H 0.08 2.13 8.06 -52.49 -0.42 1.70 16 9 C -0.02 -0.34 1.22 -155.66 -0.19 -0.53 16 10 C 0.17 3.66 5.62 -4.04 -0.02 3.63 16 11 N -0.71 -14.05 5.30 -65.23 -0.35 -14.40 16 12 C 0.70 13.22 7.80 -86.93 -0.68 12.54 16 13 O -0.60 -13.09 14.40 5.29 0.08 -13.01 16 14 N -0.74 -10.89 5.26 -50.26 -0.26 -11.15 16 15 C 0.17 2.19 0.87 -129.50 -0.11 2.08 16 16 C -0.12 -1.51 5.53 -25.13 -0.14 -1.65 16 17 C -0.13 -1.31 6.90 -24.78 -0.17 -1.48 16 18 C -0.11 -1.01 6.42 -25.14 -0.16 -1.17 16 19 C 0.07 0.71 3.94 -65.72 -0.26 0.45 16 20 H 0.09 0.85 7.71 -51.93 -0.40 0.45 16 21 N -0.67 -6.81 7.03 -102.22 -0.72 -7.53 16 22 C 0.04 0.44 7.37 -1.93 -0.01 0.42 16 23 C -0.15 -2.04 5.03 -24.92 -0.13 -2.17 16 24 C -0.18 -3.45 9.88 -26.73 -0.26 -3.71 16 25 C -0.20 -4.03 7.59 -26.73 -0.20 -4.23 16 26 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.06 1.38 6.40 -51.93 -0.33 1.05 16 28 H 0.04 0.83 7.90 -51.92 -0.41 0.42 16 29 H 0.41 7.81 7.36 -40.82 -0.30 7.51 16 30 H 0.39 5.08 8.32 -40.82 -0.34 4.74 16 31 H 0.07 0.88 7.53 -51.93 -0.39 0.49 16 32 H 0.08 1.19 6.83 -51.93 -0.35 0.83 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.74 7.90 -51.93 -0.41 0.33 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.34 3.25 8.92 -39.29 -0.35 2.90 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 40 H 0.08 1.23 7.53 -51.93 -0.39 0.84 16 41 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 42 H 0.07 1.26 8.05 -51.93 -0.42 0.84 16 43 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 44 H 0.09 1.92 7.19 -51.92 -0.37 1.55 16 45 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -29.59 345.19 -9.76 -39.36 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -7.51 Total: 15.76 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -2.71 Total: -6.42 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.55 Total: -58.04 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.08 Total: -13.01 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.27 Total: 17.16 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.59 -9.76 -39.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891869757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.559 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds