Wall clock time and date at job start Tue Mar 31 2020 07:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99974 * 2 1 4 4 H 1.48502 * 109.46778 * 270.85266 * 3 2 1 5 5 H 1.48497 * 109.47033 * 30.84632 * 3 2 1 6 6 H 1.48497 * 109.47184 * 150.85183 * 3 2 1 7 7 C 1.37878 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00438 * 358.98325 * 7 2 1 9 9 C 1.50704 * 119.99718 * 178.98305 * 7 2 1 10 10 C 1.52995 * 115.55074 * 87.54179 * 9 7 2 11 11 N 1.46500 * 109.47253 * 34.55872 * 10 9 7 12 12 C 1.34774 * 119.99999 * 184.80505 * 11 10 9 13 13 O 1.21588 * 119.99867 * 4.43743 * 12 11 10 14 14 N 1.34771 * 120.00018 * 184.44799 * 12 11 10 15 15 C 1.46506 * 120.00216 * 174.94130 * 14 12 11 16 16 C 1.54198 * 111.81710 * 299.29784 * 15 14 12 17 17 C 1.54848 * 104.32336 * 261.02492 * 16 15 14 18 18 C 1.54862 * 102.73598 * 321.93989 * 17 16 15 19 19 C 1.54171 * 104.26837 * 38.19733 * 18 17 16 20 20 H 1.08995 * 111.21759 * 98.04432 * 19 18 17 21 21 N 1.47813 * 109.09540 * 221.08570 * 19 18 17 22 22 C 1.48515 * 105.85660 * 89.00391 * 21 19 18 23 23 C 1.54545 * 112.58334 * 61.99351 * 15 14 12 24 24 C 1.53009 * 117.51541 * 233.24161 * 9 7 2 25 25 C 1.53000 * 59.99888 * 107.48249 * 24 9 7 26 26 H 0.97000 * 120.00465 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47203 * 274.55534 * 10 9 7 28 28 H 1.09011 * 109.47091 * 154.55794 * 10 9 7 29 29 H 0.96997 * 119.99736 * 4.79674 * 11 10 9 30 30 H 0.97000 * 120.00313 * 354.93390 * 14 12 11 31 31 H 1.08998 * 110.46405 * 142.30878 * 16 15 14 32 32 H 1.09005 * 110.57211 * 19.78363 * 16 15 14 33 33 H 1.09005 * 110.75684 * 203.62914 * 17 16 15 34 34 H 1.08994 * 110.92106 * 80.32773 * 17 16 15 35 35 H 1.09007 * 110.47352 * 279.50044 * 18 17 16 36 36 H 1.08996 * 110.47025 * 156.89591 * 18 17 16 37 37 H 1.00899 * 111.00373 * 209.54092 * 21 19 18 38 38 H 1.08998 * 110.66927 * 157.93809 * 22 21 19 39 39 H 1.08995 * 110.67199 * 281.07766 * 22 21 19 40 40 H 1.09002 * 110.70410 * 262.13237 * 23 15 14 41 41 H 1.09005 * 110.70189 * 25.18199 * 23 15 14 42 42 H 1.08999 * 117.49475 * 214.97303 * 24 9 7 43 43 H 1.09003 * 117.49707 * 359.97438 * 24 9 7 44 44 H 1.09007 * 117.49996 * 252.51105 * 25 24 9 45 45 H 1.08993 * 117.50184 * 107.49341 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4785 2.0568 -1.4000 5 1 1.4556 2.6474 0.7179 6 1 3.5555 1.4351 0.6819 7 6 2.0045 -1.1941 0.0005 8 1 1.4647 -2.1293 0.0175 9 6 3.5114 -1.1941 -0.0226 10 6 4.1924 -1.1220 1.3455 11 7 3.3918 -1.8558 2.3288 12 6 3.7476 -1.8476 3.6287 13 8 4.6848 -1.1668 3.9981 14 7 3.0648 -2.5943 4.5190 15 6 3.5182 -2.6726 5.9099 16 6 4.9378 -3.2650 6.0174 17 6 4.7060 -4.7505 6.3881 18 6 3.5035 -4.6760 7.3610 19 6 2.6007 -3.5770 6.7658 20 1 1.7928 -4.0076 6.1743 21 7 2.0725 -2.7385 7.8626 22 6 3.0703 -1.6569 8.0631 23 6 3.4998 -1.2993 6.6184 24 6 4.2015 -2.0163 -1.1129 25 6 4.2000 -0.4884 -1.1926 26 1 -0.4851 0.8400 -0.0004 27 1 4.2802 -0.0801 1.6532 28 1 5.1855 -1.5668 1.2809 29 1 2.6055 -2.3475 2.0442 30 1 2.2730 -3.0797 4.2389 31 1 5.5029 -2.7604 6.8010 32 1 5.4585 -3.1873 5.0629 33 1 5.5817 -5.1652 6.8873 34 1 4.4527 -5.3370 5.5050 35 1 3.8379 -4.3952 8.3598 36 1 2.9759 -5.6293 7.3886 37 1 1.1693 -2.3575 7.6237 38 1 2.6127 -0.7972 8.5524 39 1 3.9215 -2.0206 8.6386 40 1 4.4925 -0.8490 6.6118 41 1 2.7735 -0.6343 6.1511 42 1 5.1407 -2.5059 -0.8554 43 1 3.5657 -2.5577 -1.8134 44 1 3.5630 -0.0243 -1.9457 45 1 5.1381 0.0273 -0.9876 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891869757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:19 Heat of formation + Delta-G solvation = -24.840201 kcal Electronic energy + Delta-G solvation = -24710.633438 eV Core-core repulsion = 21341.381598 eV Total energy + Delta-G solvation = -3369.251840 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.81407 -40.14777 -38.68848 -35.27754 -34.95819 -34.43822 -34.24512 -31.27454 -28.65307 -27.75670 -27.28146 -26.60899 -23.34354 -22.69140 -22.50924 -21.25103 -20.92129 -20.28822 -18.87081 -18.41971 -18.06375 -17.08425 -16.65996 -16.34807 -15.88627 -15.67753 -15.45801 -15.36821 -14.92337 -14.83643 -14.62262 -14.32161 -14.04138 -13.85927 -13.12153 -13.08447 -12.80231 -12.73450 -12.59651 -12.29923 -12.17481 -12.07917 -12.01958 -11.75867 -11.66441 -11.56374 -11.48896 -11.16541 -10.95122 -10.68032 -10.39811 -10.13127 -9.68222 -9.54966 -8.32613 -6.37870 1.29730 1.36866 1.46665 1.82864 2.25364 2.33991 3.01283 3.05020 3.14981 3.50533 3.55397 3.67518 3.90952 4.06736 4.18935 4.20810 4.34324 4.35141 4.36275 4.40170 4.44891 4.62201 4.62881 4.72567 4.80265 4.83609 4.86724 4.97011 5.00346 5.07393 5.08216 5.12728 5.19582 5.22344 5.28457 5.45433 5.48235 5.63702 5.70530 5.73244 5.78510 6.13930 6.27931 6.37777 6.70336 7.23213 7.33404 7.71632 8.80934 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021208 B = 0.004368 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.939079 B = 6408.096243 C = 6874.702626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.038 3.962 3 Si 0.922 3.078 4 H -0.268 1.268 5 H -0.306 1.306 6 H -0.246 1.246 7 C -0.474 4.474 8 H 0.051 0.949 9 C -0.041 4.041 10 C 0.182 3.818 11 N -0.719 5.719 12 C 0.698 3.302 13 O -0.633 6.633 14 N -0.725 5.725 15 C 0.160 3.840 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.098 4.098 19 C 0.071 3.929 20 H 0.096 0.904 21 N -0.661 5.661 22 C 0.052 3.948 23 C -0.153 4.153 24 C -0.154 4.154 25 C -0.196 4.196 26 H 0.264 0.736 27 H 0.035 0.965 28 H 0.056 0.944 29 H 0.407 0.593 30 H 0.404 0.596 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.343 0.657 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.044 0.956 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.064 -8.718 13.949 17.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.161 4.161 3 Si 0.749 3.251 4 H -0.193 1.193 5 H -0.234 1.234 6 H -0.170 1.170 7 C -0.511 4.511 8 H 0.070 0.930 9 C -0.042 4.042 10 C 0.057 3.943 11 N -0.373 5.373 12 C 0.397 3.603 13 O -0.515 6.515 14 N -0.381 5.381 15 C 0.072 3.928 16 C -0.156 4.156 17 C -0.158 4.158 18 C -0.136 4.136 19 C -0.040 4.040 20 H 0.114 0.886 21 N -0.287 5.287 22 C -0.077 4.077 23 C -0.193 4.193 24 C -0.191 4.191 25 C -0.233 4.233 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.243 0.757 30 H 0.240 0.760 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.159 0.841 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.121 0.879 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.949 -8.455 14.836 18.836 hybrid contribution -0.898 1.598 -1.622 2.448 sum 7.052 -6.857 13.213 16.472 Atomic orbital electron populations 1.69987 1.07772 1.27744 1.52151 1.25539 0.94908 1.01818 0.93821 0.86175 0.80093 0.80148 0.78712 1.19348 1.23402 1.17017 1.20230 0.88105 0.92885 1.49911 0.93046 1.19546 0.93418 1.03814 0.87426 1.20677 0.92083 0.94310 0.87228 1.45063 1.32197 1.55027 1.05020 1.16144 0.82467 0.80366 0.81277 1.90818 1.33628 1.47477 1.79593 1.45020 1.31769 1.52523 1.08789 1.21976 0.95770 0.95417 0.79648 1.22592 0.95049 0.96950 1.00998 1.22513 0.99077 0.94736 0.99439 1.22269 0.94785 0.97619 0.98933 1.23091 0.96554 0.93937 0.90436 0.88638 1.62817 1.05453 1.20278 1.40180 1.23093 0.96491 0.94102 0.94052 1.23369 1.01724 0.96634 0.97620 1.22948 1.01526 0.92343 1.02257 1.22994 1.01857 0.96221 1.02256 0.92720 0.94722 0.92622 0.75666 0.75981 0.90924 0.93706 0.90052 0.91602 0.90300 0.89807 0.84113 0.89389 0.89155 0.91811 0.93720 0.87926 0.89622 0.90435 0.88595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.22 13.96 21.45 0.30 -54.92 16 2 C 0.04 2.09 5.47 84.66 0.46 2.55 16 3 Si 0.92 44.22 25.11 68.60 1.72 45.94 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.31 -15.15 7.11 99.48 0.71 -14.45 16 6 H -0.25 -11.40 5.33 99.48 0.53 -10.87 16 7 C -0.47 -24.23 7.86 25.60 0.20 -24.03 16 8 H 0.05 2.86 8.06 -2.91 -0.02 2.83 16 9 C -0.04 -1.74 1.22 -52.92 -0.06 -1.80 16 10 C 0.18 7.55 5.62 86.38 0.49 8.04 16 11 N -0.72 -28.19 5.30 -478.54 -2.53 -30.72 16 12 C 0.70 26.48 7.80 179.06 1.40 27.87 16 13 O -0.63 -27.86 14.40 -3.99 -0.06 -27.92 16 14 N -0.73 -21.18 5.26 -431.18 -2.27 -23.45 16 15 C 0.16 4.02 0.87 5.10 0.00 4.02 16 16 C -0.12 -2.91 5.53 31.63 0.17 -2.73 16 17 C -0.12 -2.18 6.90 31.86 0.22 -1.96 16 18 C -0.10 -1.58 6.42 31.63 0.20 -1.38 16 19 C 0.07 1.35 3.94 45.70 0.18 1.53 16 20 H 0.10 1.66 7.71 -2.39 -0.02 1.64 16 21 N -0.66 -12.01 7.03 -477.31 -3.35 -15.36 16 22 C 0.05 1.00 7.37 86.64 0.64 1.64 16 23 C -0.15 -4.08 5.03 31.77 0.16 -3.92 16 24 C -0.15 -5.52 9.88 30.60 0.30 -5.22 16 25 C -0.20 -7.59 7.59 30.59 0.23 -7.36 16 26 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 27 H 0.03 1.60 6.40 -2.39 -0.02 1.58 16 28 H 0.06 2.14 7.90 -2.38 -0.02 2.12 16 29 H 0.41 15.71 7.36 -92.71 -0.68 15.03 16 30 H 0.40 10.13 8.32 -92.71 -0.77 9.36 16 31 H 0.07 1.75 7.53 -2.39 -0.02 1.73 16 32 H 0.04 1.40 6.83 -2.38 -0.02 1.38 16 33 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.27 7.90 -2.38 -0.02 1.25 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.34 5.87 8.92 -89.69 -0.80 5.07 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 1.59 8.11 -2.39 -0.02 1.57 16 40 H 0.06 1.93 7.53 -2.39 -0.02 1.91 16 41 H 0.04 1.39 8.12 -2.38 -0.02 1.37 16 42 H 0.10 3.12 8.05 -2.39 -0.02 3.10 16 43 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 44 H 0.08 3.20 7.19 -2.38 -0.02 3.18 16 45 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -64.39 345.19 -3.01 -67.41 By element: Atomic # 1 Polarization: 43.19 SS G_CDS: -1.42 Total: 41.77 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 4.60 Total: -2.74 kcal Atomic # 7 Polarization: -116.60 SS G_CDS: -7.86 Total: -124.46 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.06 Total: -27.92 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.72 Total: 45.94 kcal Total: -64.39 -3.01 -67.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891869757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.567 kcal (2) G-P(sol) polarization free energy of solvation -64.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds