Wall clock time and date at job start Tue Mar 31 2020 07:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99670 * 2 1 4 4 H 1.48503 * 109.46821 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47275 * 119.99753 * 3 2 1 6 6 H 1.48498 * 109.46994 * 240.00389 * 3 2 1 7 7 C 1.37870 * 120.00536 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00216 * 187.13236 * 7 2 1 9 9 C 1.50698 * 119.99717 * 7.12509 * 7 2 1 10 10 C 1.53002 * 115.55420 * 275.21628 * 9 7 2 11 11 N 1.46505 * 109.47002 * 297.93622 * 10 9 7 12 12 C 1.34775 * 119.99989 * 184.66830 * 11 10 9 13 13 O 1.21582 * 119.99897 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00005 * 180.02562 * 12 11 10 15 15 C 1.46507 * 120.00128 * 179.97438 * 14 12 11 16 16 C 1.54197 * 111.81116 * 60.69872 * 15 14 12 17 17 C 1.53971 * 104.74247 * 100.25291 * 16 15 14 18 18 C 1.54858 * 103.15558 * 36.87373 * 17 16 15 19 19 C 1.54175 * 104.26566 * 322.50701 * 18 17 16 20 20 H 1.09007 * 111.21515 * 262.52599 * 19 18 17 21 21 N 1.47810 * 109.09206 * 138.91281 * 19 18 17 22 22 C 1.48510 * 105.85748 * 270.97975 * 21 19 18 23 23 C 1.54543 * 111.84347 * 297.50679 * 15 14 12 24 24 C 1.53006 * 117.49573 * 129.54951 * 9 7 2 25 25 C 1.53000 * 117.49870 * 60.88723 * 9 7 2 26 26 H 0.96995 * 119.99691 * 175.40250 * 1 2 3 27 27 H 1.08996 * 109.47248 * 57.93605 * 10 9 7 28 28 H 1.08998 * 109.47484 * 177.93924 * 10 9 7 29 29 H 0.97003 * 120.00045 * 4.67435 * 11 10 9 30 30 H 0.97003 * 120.00028 * 0.02562 * 14 12 11 31 31 H 1.09008 * 110.45649 * 217.68090 * 16 15 14 32 32 H 1.08995 * 110.46740 * 340.25665 * 16 15 14 33 33 H 1.08994 * 109.95988 * 278.69856 * 17 16 15 34 34 H 1.09005 * 111.31557 * 155.67792 * 17 16 15 35 35 H 1.09003 * 110.47287 * 203.80984 * 18 17 16 36 36 H 1.08998 * 110.47529 * 81.20353 * 18 17 16 37 37 H 1.00897 * 111.01033 * 31.52096 * 21 19 18 38 38 H 1.09003 * 110.67054 * 78.92804 * 22 21 19 39 39 H 1.08999 * 110.67612 * 201.90369 * 22 21 19 40 40 H 1.08999 * 110.70586 * 335.05983 * 23 15 14 41 41 H 1.09001 * 110.69960 * 98.28548 * 23 15 14 42 42 H 1.08993 * 117.50080 * 359.97438 * 24 9 7 43 43 H 1.09003 * 117.50024 * 145.02591 * 24 9 7 44 44 H 1.09003 * 117.49927 * 214.97499 * 25 9 7 45 45 H 1.08998 * 117.49843 * 0.02562 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6966 1.2125 6 1 3.1028 1.6966 -1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0783 -1.1975 0.1156 9 6 1.2599 -2.4939 -0.1630 10 6 0.6779 -3.0862 1.1221 11 7 1.7653 -3.3931 2.0546 12 6 1.4980 -4.0129 3.2211 13 8 0.3543 -4.3178 3.4993 14 7 2.4983 -4.2948 4.0792 15 6 2.2076 -4.9681 5.3475 16 6 1.5739 -6.3564 5.1270 17 6 2.7337 -7.3511 5.3172 18 6 3.5604 -6.7140 6.4613 19 6 3.4873 -5.1991 6.1847 20 1 4.3744 -4.8515 5.6551 21 7 3.2994 -4.4826 7.4639 22 6 1.8312 -4.4037 7.6730 23 6 1.2859 -4.1185 6.2514 24 6 1.7688 -3.4717 -1.2242 25 6 0.4686 -2.6979 -1.4565 26 1 -0.4849 -0.8373 -0.0673 27 1 -0.0005 -2.3659 1.5794 28 1 0.1325 -4.0001 0.8866 29 1 2.6778 -3.1501 1.8325 30 1 3.4106 -4.0512 3.8574 31 1 0.8092 -6.5500 5.8794 32 1 1.1506 -6.4275 4.1251 33 1 3.3237 -7.4140 4.4030 34 1 2.3675 -8.3360 5.6074 35 1 4.5936 -7.0592 6.4229 36 1 3.1154 -6.9469 7.4286 37 1 3.7468 -4.9742 8.2229 38 1 1.4449 -5.3506 8.0504 39 1 1.5826 -3.5896 8.3537 40 1 1.3776 -3.0598 6.0088 41 1 0.2503 -4.4469 6.1629 42 1 2.6419 -3.1745 -1.8050 43 1 1.6885 -4.5369 -1.0070 44 1 -0.4665 -3.2543 -1.3920 45 1 0.4869 -1.8919 -2.1901 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891869764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:22 Heat of formation + Delta-G solvation = -10.980198 kcal Electronic energy + Delta-G solvation = -24535.599790 eV Core-core repulsion = 21166.948965 eV Total energy + Delta-G solvation = -3368.650825 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.76488 -38.80083 -36.96522 -34.28984 -33.50387 -33.25090 -31.90361 -30.47804 -27.41333 -26.40856 -25.64082 -24.71385 -21.66879 -21.48218 -21.31971 -20.21981 -19.69047 -19.14582 -17.59839 -17.09279 -16.46760 -15.71714 -15.31255 -14.86523 -14.66348 -14.41063 -13.95346 -13.79769 -13.75837 -13.31997 -12.97869 -12.72065 -12.51406 -12.33261 -12.01232 -11.84665 -11.73942 -11.53449 -11.15825 -11.02355 -10.92064 -10.86038 -10.80103 -10.67930 -10.48745 -10.13890 -9.73224 -9.51844 -8.82555 -8.71450 -8.65113 -8.48327 -8.38359 -8.04770 -6.38433 -4.14286 3.13529 3.41486 3.42075 3.61126 3.74539 3.93960 4.21846 4.47577 4.52892 4.62947 4.73863 4.94801 5.02268 5.11237 5.18199 5.24343 5.25937 5.30896 5.42590 5.47196 5.63000 5.73066 5.76546 5.84570 5.88850 6.01134 6.11170 6.16141 6.20814 6.25262 6.26131 6.43051 6.53855 6.59302 6.66309 6.86006 6.89533 7.08828 7.19053 7.21438 7.30681 7.52781 8.18159 8.34187 8.64511 8.82786 9.18900 9.61871 11.01000 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.020231 B = 0.004024 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.687679 B = 6956.289226 C = 7612.408060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.030 3.970 3 Si 1.066 2.934 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.576 4.576 8 H 0.052 0.948 9 C 0.006 3.994 10 C 0.179 3.821 11 N -0.719 5.719 12 C 0.701 3.299 13 O -0.599 6.599 14 N -0.738 5.738 15 C 0.193 3.807 16 C -0.123 4.123 17 C -0.124 4.124 18 C -0.148 4.148 19 C 0.068 3.932 20 H 0.097 0.903 21 N -0.665 5.665 22 C 0.038 3.962 23 C -0.120 4.120 24 C -0.194 4.194 25 C -0.172 4.172 26 H 0.276 0.724 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.397 0.603 30 H 0.394 0.606 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.338 0.662 38 H 0.041 0.959 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.392 -12.549 12.419 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.894 3.106 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.614 4.614 8 H 0.070 0.930 9 C 0.005 3.995 10 C 0.055 3.945 11 N -0.371 5.371 12 C 0.401 3.599 13 O -0.479 6.479 14 N -0.393 5.393 15 C 0.105 3.895 16 C -0.162 4.162 17 C -0.162 4.162 18 C -0.188 4.188 19 C -0.043 4.043 20 H 0.115 0.885 21 N -0.293 5.293 22 C -0.091 4.091 23 C -0.159 4.159 24 C -0.231 4.231 25 C -0.210 4.210 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.231 0.769 30 H 0.228 0.772 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.154 0.846 38 H 0.060 0.940 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.199 -10.456 12.461 17.408 hybrid contribution 0.840 -2.372 -0.111 2.518 sum 7.039 -12.827 12.350 19.148 Atomic orbital electron populations 1.70732 1.06824 1.31713 1.44050 1.25750 0.96510 1.02264 0.93163 0.83584 0.74964 0.75559 0.76457 1.20804 1.21502 1.21481 1.21152 0.94064 0.89675 1.56467 0.92979 1.19341 0.98959 0.95468 0.85733 1.20844 0.87526 0.97009 0.89115 1.45040 1.12193 1.61787 1.18102 1.15973 0.84605 0.78955 0.80397 1.90854 1.19687 1.60075 1.77254 1.45045 1.09599 1.65336 1.19370 1.21180 0.93567 0.91958 0.82818 1.22570 0.97276 0.92687 1.03630 1.22336 0.97168 0.98451 0.98207 1.23057 1.00788 0.95718 0.99199 1.23058 0.97825 0.91809 0.91611 0.88550 1.63008 1.10365 1.52224 1.03751 1.23048 0.87853 1.00315 0.97918 1.22836 0.99472 1.01122 0.92512 1.22889 0.97868 0.95551 1.06791 1.22747 0.93340 1.02163 1.02774 0.91272 0.92208 0.94449 0.76882 0.77224 0.91266 0.89797 0.91430 0.91445 0.91069 0.91475 0.84585 0.94045 0.89905 0.90472 0.90025 0.90133 0.91463 0.91301 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.06 13.57 55.43 0.75 -25.31 16 2 C 0.03 0.81 5.39 -17.82 -0.10 0.72 16 3 Si 1.07 24.32 29.91 -169.99 -5.08 19.24 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.58 -14.97 8.44 -34.44 -0.29 -15.26 16 8 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 9 C 0.01 0.14 0.99 -155.66 -0.15 -0.02 16 10 C 0.18 4.08 5.43 -4.04 -0.02 4.06 16 11 N -0.72 -14.23 5.46 -65.23 -0.36 -14.59 16 12 C 0.70 13.31 7.86 -86.92 -0.68 12.63 16 13 O -0.60 -13.22 14.31 5.29 0.08 -13.14 16 14 N -0.74 -10.81 5.23 -50.26 -0.26 -11.07 16 15 C 0.19 2.49 0.87 -129.51 -0.11 2.38 16 16 C -0.12 -1.55 5.49 -25.60 -0.14 -1.69 16 17 C -0.12 -1.20 6.86 -25.25 -0.17 -1.37 16 18 C -0.15 -1.24 6.17 -25.14 -0.16 -1.40 16 19 C 0.07 0.69 4.05 -65.72 -0.27 0.42 16 20 H 0.10 0.97 7.68 -51.93 -0.40 0.57 16 21 N -0.66 -6.68 7.28 -102.22 -0.74 -7.42 16 22 C 0.04 0.40 7.38 -1.93 -0.01 0.38 16 23 C -0.12 -1.66 5.12 -24.92 -0.13 -1.78 16 24 C -0.19 -4.02 9.96 -26.68 -0.27 -4.29 16 25 C -0.17 -3.85 8.74 -26.69 -0.23 -4.09 16 26 H 0.28 7.97 6.19 -40.82 -0.25 7.71 16 27 H 0.06 1.55 7.82 -51.93 -0.41 1.15 16 28 H 0.04 0.84 8.11 -51.93 -0.42 0.42 16 29 H 0.40 7.35 8.24 -40.82 -0.34 7.02 16 30 H 0.39 4.92 8.30 -40.82 -0.34 4.58 16 31 H 0.07 0.84 7.59 -51.92 -0.39 0.45 16 32 H 0.08 1.31 6.67 -51.93 -0.35 0.96 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.52 7.74 -51.93 -0.40 0.12 16 37 H 0.34 2.67 8.33 -39.29 -0.33 2.34 16 38 H 0.04 0.38 8.11 -51.93 -0.42 -0.04 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.24 8.11 -51.93 -0.42 0.82 16 41 H 0.08 1.22 7.63 -51.93 -0.40 0.82 16 42 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 LS Contribution 353.30 15.07 5.32 5.32 Total: -1.00 -30.33 353.30 -10.48 -40.81 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -7.45 Total: 15.47 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -2.73 Total: -9.31 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.61 Total: -58.39 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.08 Total: -13.14 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -5.08 Total: 19.24 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.33 -10.48 -40.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891869764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.828 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds