Wall clock time and date at job start Tue Mar 31 2020 07:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99670 * 2 1 4 4 H 1.48503 * 109.46821 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47275 * 119.99753 * 3 2 1 6 6 H 1.48498 * 109.46994 * 240.00389 * 3 2 1 7 7 C 1.37870 * 120.00536 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00216 * 187.13236 * 7 2 1 9 9 C 1.50698 * 119.99717 * 7.12509 * 7 2 1 10 10 C 1.53002 * 115.55420 * 275.21628 * 9 7 2 11 11 N 1.46505 * 109.47002 * 297.93622 * 10 9 7 12 12 C 1.34775 * 119.99989 * 184.66830 * 11 10 9 13 13 O 1.21582 * 119.99897 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00005 * 180.02562 * 12 11 10 15 15 C 1.46507 * 120.00128 * 179.97438 * 14 12 11 16 16 C 1.54197 * 111.81116 * 60.69872 * 15 14 12 17 17 C 1.53971 * 104.74247 * 100.25291 * 16 15 14 18 18 C 1.54858 * 103.15558 * 36.87373 * 17 16 15 19 19 C 1.54175 * 104.26566 * 322.50701 * 18 17 16 20 20 H 1.09007 * 111.21515 * 262.52599 * 19 18 17 21 21 N 1.47810 * 109.09206 * 138.91281 * 19 18 17 22 22 C 1.48510 * 105.85748 * 270.97975 * 21 19 18 23 23 C 1.54543 * 111.84347 * 297.50679 * 15 14 12 24 24 C 1.53006 * 117.49573 * 129.54951 * 9 7 2 25 25 C 1.53000 * 117.49870 * 60.88723 * 9 7 2 26 26 H 0.96995 * 119.99691 * 175.40250 * 1 2 3 27 27 H 1.08996 * 109.47248 * 57.93605 * 10 9 7 28 28 H 1.08998 * 109.47484 * 177.93924 * 10 9 7 29 29 H 0.97003 * 120.00045 * 4.67435 * 11 10 9 30 30 H 0.97003 * 120.00028 * 0.02562 * 14 12 11 31 31 H 1.09008 * 110.45649 * 217.68090 * 16 15 14 32 32 H 1.08995 * 110.46740 * 340.25665 * 16 15 14 33 33 H 1.08994 * 109.95988 * 278.69856 * 17 16 15 34 34 H 1.09005 * 111.31557 * 155.67792 * 17 16 15 35 35 H 1.09003 * 110.47287 * 203.80984 * 18 17 16 36 36 H 1.08998 * 110.47529 * 81.20353 * 18 17 16 37 37 H 1.00897 * 111.01033 * 31.52096 * 21 19 18 38 38 H 1.09003 * 110.67054 * 78.92804 * 22 21 19 39 39 H 1.08999 * 110.67612 * 201.90369 * 22 21 19 40 40 H 1.08999 * 110.70586 * 335.05983 * 23 15 14 41 41 H 1.09001 * 110.69960 * 98.28548 * 23 15 14 42 42 H 1.08993 * 117.50080 * 359.97438 * 24 9 7 43 43 H 1.09003 * 117.50024 * 145.02591 * 24 9 7 44 44 H 1.09003 * 117.49927 * 214.97499 * 25 9 7 45 45 H 1.08998 * 117.49843 * 0.02562 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6966 1.2125 6 1 3.1028 1.6966 -1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0783 -1.1975 0.1156 9 6 1.2599 -2.4939 -0.1630 10 6 0.6779 -3.0862 1.1221 11 7 1.7653 -3.3931 2.0546 12 6 1.4980 -4.0129 3.2211 13 8 0.3543 -4.3178 3.4993 14 7 2.4983 -4.2948 4.0792 15 6 2.2076 -4.9681 5.3475 16 6 1.5739 -6.3564 5.1270 17 6 2.7337 -7.3511 5.3172 18 6 3.5604 -6.7140 6.4613 19 6 3.4873 -5.1991 6.1847 20 1 4.3744 -4.8515 5.6551 21 7 3.2994 -4.4826 7.4639 22 6 1.8312 -4.4037 7.6730 23 6 1.2859 -4.1185 6.2514 24 6 1.7688 -3.4717 -1.2242 25 6 0.4686 -2.6979 -1.4565 26 1 -0.4849 -0.8373 -0.0673 27 1 -0.0005 -2.3659 1.5794 28 1 0.1325 -4.0001 0.8866 29 1 2.6778 -3.1501 1.8325 30 1 3.4106 -4.0512 3.8574 31 1 0.8092 -6.5500 5.8794 32 1 1.1506 -6.4275 4.1251 33 1 3.3237 -7.4140 4.4030 34 1 2.3675 -8.3360 5.6074 35 1 4.5936 -7.0592 6.4229 36 1 3.1154 -6.9469 7.4286 37 1 3.7468 -4.9742 8.2229 38 1 1.4449 -5.3506 8.0504 39 1 1.5826 -3.5896 8.3537 40 1 1.3776 -3.0598 6.0088 41 1 0.2503 -4.4469 6.1629 42 1 2.6419 -3.1745 -1.8050 43 1 1.6885 -4.5369 -1.0070 44 1 -0.4665 -3.2543 -1.3920 45 1 0.4869 -1.8919 -2.1901 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891869764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:21 Heat of formation + Delta-G solvation = -32.840319 kcal Electronic energy + Delta-G solvation = -24536.547716 eV Core-core repulsion = 21166.948965 eV Total energy + Delta-G solvation = -3369.598751 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.87380 -40.22093 -38.73291 -35.27595 -35.04566 -34.52925 -33.92468 -31.52091 -28.60292 -27.48950 -27.11646 -26.58595 -23.16741 -22.70784 -22.34996 -21.56139 -21.40227 -20.37891 -19.14658 -18.46269 -17.94499 -16.83115 -16.49243 -16.25806 -15.96932 -15.77067 -15.60272 -15.14058 -15.00161 -14.76288 -14.55749 -14.30719 -13.94688 -13.57299 -13.44379 -12.91271 -12.81304 -12.70534 -12.61657 -12.48520 -12.23505 -12.08352 -11.99233 -11.95819 -11.79925 -11.56026 -11.50517 -11.16858 -10.55740 -10.44328 -10.32701 -10.20825 -9.66145 -9.47772 -8.51760 -6.27314 1.56258 1.62657 1.74401 1.80803 2.21683 2.59875 3.05854 3.16651 3.25303 3.37163 3.49230 3.72781 3.74373 4.05578 4.10299 4.12209 4.26293 4.32365 4.36976 4.43205 4.44773 4.55523 4.56895 4.61359 4.77139 4.82825 4.84400 4.90132 4.95271 4.99175 5.05825 5.08523 5.15151 5.18485 5.33821 5.34235 5.44413 5.62082 5.70890 5.73502 6.08463 6.14618 6.27233 6.45478 6.70397 7.18817 7.55877 7.66531 8.87960 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.020231 B = 0.004024 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.687679 B = 6956.289226 C = 7612.408060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.020 4.020 3 Si 1.109 2.891 4 H -0.293 1.293 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.574 4.574 8 H 0.054 0.946 9 C -0.019 4.019 10 C 0.197 3.803 11 N -0.717 5.717 12 C 0.699 3.301 13 O -0.633 6.633 14 N -0.721 5.721 15 C 0.182 3.818 16 C -0.122 4.122 17 C -0.117 4.117 18 C -0.137 4.137 19 C 0.074 3.926 20 H 0.103 0.897 21 N -0.670 5.670 22 C 0.048 3.952 23 C -0.125 4.125 24 C -0.162 4.162 25 C -0.178 4.178 26 H 0.264 0.736 27 H 0.017 0.983 28 H 0.038 0.962 29 H 0.405 0.595 30 H 0.406 0.594 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.355 0.645 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.135 -14.012 13.644 22.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.220 4.220 3 Si 0.932 3.068 4 H -0.219 1.219 5 H -0.200 1.200 6 H -0.195 1.195 7 C -0.612 4.612 8 H 0.072 0.928 9 C -0.019 4.019 10 C 0.072 3.928 11 N -0.370 5.370 12 C 0.399 3.601 13 O -0.515 6.515 14 N -0.377 5.377 15 C 0.094 3.906 16 C -0.161 4.161 17 C -0.155 4.155 18 C -0.176 4.176 19 C -0.037 4.037 20 H 0.121 0.879 21 N -0.301 5.301 22 C -0.081 4.081 23 C -0.164 4.164 24 C -0.199 4.199 25 C -0.216 4.216 26 H 0.075 0.925 27 H 0.035 0.965 28 H 0.056 0.944 29 H 0.240 0.760 30 H 0.243 0.757 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.173 0.827 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.097 0.903 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.012 -11.951 13.711 20.299 hybrid contribution -0.043 -1.957 -0.476 2.015 sum 8.969 -13.909 13.236 21.192 Atomic orbital electron populations 1.70839 1.07937 1.31081 1.46951 1.27000 0.96522 1.05761 0.92723 0.83024 0.74135 0.71945 0.77682 1.21864 1.19986 1.19528 1.21440 0.94253 0.90677 1.54820 0.92804 1.19335 1.00330 0.95882 0.86396 1.20417 0.87652 0.95661 0.89090 1.44870 1.11783 1.62169 1.18227 1.16121 0.84897 0.78623 0.80494 1.90830 1.21475 1.61329 1.77889 1.44944 1.09249 1.64344 1.19150 1.21494 0.95365 0.91701 0.82020 1.22499 0.98529 0.93577 1.01518 1.22308 0.95932 0.98337 0.98936 1.23011 1.01922 0.93592 0.99033 1.23033 0.96087 0.93461 0.91110 0.87866 1.62969 1.09914 1.52907 1.04289 1.22954 0.88166 1.01451 0.95518 1.22781 0.98940 0.99237 0.95481 1.22887 0.96845 0.96149 1.04000 1.22694 0.94876 1.02337 1.01695 0.92541 0.96467 0.94409 0.76010 0.75731 0.91211 0.93322 0.91579 0.89962 0.88843 0.90181 0.82678 0.92180 0.89381 0.93535 0.92115 0.89454 0.89155 0.90250 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.57 13.57 21.45 0.29 -55.28 16 2 C -0.02 -1.08 5.39 84.65 0.46 -0.62 16 3 Si 1.11 48.96 29.91 68.60 2.05 51.01 16 4 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.57 -29.84 8.44 25.60 0.22 -29.62 16 8 H 0.05 2.72 7.82 -2.91 -0.02 2.70 16 9 C -0.02 -0.87 0.99 -52.93 -0.05 -0.92 16 10 C 0.20 9.21 5.43 86.38 0.47 9.68 16 11 N -0.72 -28.74 5.46 -478.54 -2.61 -31.35 16 12 C 0.70 27.13 7.86 179.06 1.41 28.54 16 13 O -0.63 -29.16 14.31 -3.97 -0.06 -29.21 16 14 N -0.72 -20.95 5.23 -431.20 -2.26 -23.20 16 15 C 0.18 4.56 0.87 5.10 0.00 4.57 16 16 C -0.12 -3.02 5.49 31.33 0.17 -2.84 16 17 C -0.12 -1.96 6.86 31.56 0.22 -1.75 16 18 C -0.14 -1.75 6.17 31.63 0.20 -1.55 16 19 C 0.07 1.30 4.05 45.70 0.19 1.49 16 20 H 0.10 1.73 7.68 -2.38 -0.02 1.71 16 21 N -0.67 -11.58 7.28 -477.31 -3.48 -15.06 16 22 C 0.05 0.93 7.38 86.64 0.64 1.57 16 23 C -0.13 -3.49 5.12 31.77 0.16 -3.33 16 24 C -0.16 -6.45 9.96 30.62 0.30 -6.14 16 25 C -0.18 -7.98 8.74 30.62 0.27 -7.71 16 26 H 0.26 15.90 6.19 -92.71 -0.57 15.33 16 27 H 0.02 0.94 7.82 -2.39 -0.02 0.92 16 28 H 0.04 1.73 8.11 -2.39 -0.02 1.72 16 29 H 0.40 14.81 8.24 -92.71 -0.76 14.04 16 30 H 0.41 9.68 8.30 -92.71 -0.77 8.91 16 31 H 0.07 1.67 7.59 -2.38 -0.02 1.66 16 32 H 0.05 1.55 6.67 -2.39 -0.02 1.53 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 0.87 7.74 -2.39 -0.02 0.85 16 37 H 0.35 4.25 8.33 -89.70 -0.75 3.50 16 38 H 0.06 0.95 8.11 -2.39 -0.02 0.93 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.05 1.55 8.11 -2.39 -0.02 1.53 16 41 H 0.06 1.91 7.63 -2.39 -0.02 1.89 16 42 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 43 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 44 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 45 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -67.81 353.30 -2.50 -70.30 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: -1.08 Total: 41.44 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 4.64 Total: -8.65 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -8.06 Total: -124.89 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.06 Total: -29.21 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 2.05 Total: 51.01 kcal Total: -67.81 -2.50 -70.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891869764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.464 kcal (2) G-P(sol) polarization free energy of solvation -67.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds