Wall clock time and date at job start Tue Mar 31 2020 07:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99882 * 2 1 4 4 H 1.48496 * 109.47187 * 270.00305 * 3 2 1 5 5 H 1.48501 * 109.46882 * 30.00498 * 3 2 1 6 6 H 1.48502 * 109.47016 * 150.00359 * 3 2 1 7 7 C 1.37882 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00451 * 169.34813 * 7 2 1 9 9 C 1.50699 * 119.99612 * 349.33404 * 7 2 1 10 10 C 1.53000 * 115.55455 * 324.42275 * 9 7 2 11 11 N 1.46500 * 109.46856 * 305.92894 * 10 9 7 12 12 C 1.34776 * 119.99573 * 183.63688 * 11 10 9 13 13 O 1.21585 * 120.00404 * 4.98269 * 12 11 10 14 14 N 1.34782 * 119.99815 * 184.98282 * 12 11 10 15 15 C 1.47907 * 122.24972 * 357.06334 * 14 12 11 16 16 C 1.52712 * 111.01734 * 232.05956 * 15 14 12 17 17 C 1.53845 * 111.46772 * 311.50702 * 16 15 14 18 18 C 1.51318 * 107.27199 * 57.55821 * 17 16 15 19 19 H 1.08997 * 109.71305 * 52.52346 * 18 17 16 20 20 N 1.46346 * 118.14498 * 179.25019 * 18 17 16 21 21 C 1.49260 * 104.05533 * 160.79041 * 20 18 17 22 22 C 1.55127 * 106.79151 * 334.17702 * 21 20 18 23 23 C 1.45497 * 122.25225 * 177.07967 * 14 12 11 24 24 H 1.09006 * 110.78335 * 239.29244 * 23 14 12 25 25 C 1.53005 * 117.49389 * 110.09040 * 9 7 2 26 26 C 1.53008 * 117.49648 * 178.74553 * 9 7 2 27 27 H 0.96997 * 120.00072 * 5.03473 * 1 2 3 28 28 H 1.09003 * 109.46725 * 185.92761 * 10 9 7 29 29 H 1.08996 * 109.47289 * 65.92946 * 10 9 7 30 30 H 0.96999 * 119.99903 * 3.63003 * 11 10 9 31 31 H 1.09003 * 109.17016 * 352.44928 * 15 14 12 32 32 H 1.08992 * 109.17155 * 111.65794 * 15 14 12 33 33 H 1.08999 * 109.05379 * 72.16305 * 16 15 14 34 34 H 1.09009 * 109.04801 * 191.06387 * 16 15 14 35 35 H 1.09003 * 110.19596 * 297.94795 * 17 16 15 36 36 H 1.08998 * 109.60111 * 176.83695 * 17 16 15 37 37 H 1.00901 * 110.99882 * 41.33406 * 20 18 17 38 38 H 1.08996 * 109.99444 * 93.51243 * 21 20 18 39 39 H 1.09002 * 109.99353 * 214.80162 * 21 20 18 40 40 H 1.09005 * 110.55096 * 115.66646 * 22 21 20 41 41 H 1.08998 * 110.55441 * 238.34473 * 22 21 20 42 42 H 1.09004 * 117.50028 * 215.00079 * 25 9 7 43 43 H 1.08999 * 117.50163 * 0.02562 * 25 9 7 44 44 H 1.08993 * 117.50086 * 359.97438 * 26 9 7 45 45 H 1.09003 * 117.49485 * 145.00479 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0706 -1.2021 -0.1734 9 6 1.2706 -2.4880 0.2404 10 6 0.1140 -2.4145 1.2394 11 7 0.5940 -1.8455 2.5011 12 6 -0.2375 -1.7523 3.5577 13 8 -1.3571 -2.2221 3.4936 14 7 0.1721 -1.1384 4.6855 15 6 1.5432 -0.6059 4.8408 16 6 2.1901 -1.1244 6.1233 17 6 1.2526 -0.9622 7.3323 18 6 -0.0254 -1.7067 7.0127 19 1 0.2092 -2.7277 6.7120 20 7 -1.0867 -1.7205 8.0204 21 6 -2.3129 -2.0830 7.2505 22 6 -2.0715 -1.6335 5.7855 23 6 -0.7046 -0.9551 5.8321 24 1 -0.8155 0.1031 6.0690 25 6 1.1225 -3.4470 -0.9425 26 6 2.0867 -3.7815 0.1983 27 1 -0.4850 0.8368 -0.0737 28 1 -0.2762 -3.4166 1.4177 29 1 -0.6769 -1.7836 0.8338 30 1 1.5102 -1.5359 2.5761 31 1 2.1458 -0.9139 3.9863 32 1 1.5027 0.4828 4.8752 33 1 2.4340 -2.1793 5.9975 34 1 3.1089 -0.5677 6.3086 35 1 1.0352 0.0925 7.5010 36 1 1.7205 -1.3916 8.2181 37 1 -1.1862 -0.8144 8.4532 38 1 -2.4717 -3.1607 7.2883 39 1 -3.1785 -1.5642 7.6624 40 1 -2.0480 -2.4961 5.1195 41 1 -2.8405 -0.9284 5.4699 42 1 0.2011 -4.0256 -1.0091 43 1 1.5563 -3.1422 -1.8949 44 1 3.1543 -3.6967 -0.0041 45 1 1.7995 -4.5802 0.8824 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891870768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:28 Heat of formation + Delta-G solvation = 17.036990 kcal Electronic energy + Delta-G solvation = -25235.581746 eV Core-core repulsion = 21868.145837 eV Total energy + Delta-G solvation = -3367.435909 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.59580 -38.32360 -36.65651 -35.65052 -33.04237 -32.65603 -32.19816 -29.02232 -28.88200 -26.14724 -25.42850 -24.23855 -22.15026 -21.30955 -21.13914 -20.81951 -19.31859 -18.99728 -17.14169 -16.36784 -15.87122 -15.65802 -15.27581 -14.79761 -14.65487 -14.30868 -14.09300 -13.89935 -13.50729 -13.34942 -13.06796 -12.88735 -12.57602 -12.00356 -11.82009 -11.75172 -11.54450 -11.21614 -11.11393 -11.03384 -10.90672 -10.82607 -10.75492 -10.53671 -10.46534 -10.28764 -9.55691 -9.17699 -8.92883 -8.83606 -8.81168 -8.28604 -8.13061 -7.66825 -6.09221 -4.19933 3.15126 3.17289 3.26440 3.27042 3.91650 4.02965 4.25499 4.55968 4.77031 4.80054 4.93204 4.94169 5.09591 5.16815 5.23943 5.36010 5.40352 5.48374 5.51986 5.65466 5.74908 5.85133 5.87941 6.00976 6.02694 6.04525 6.19187 6.30993 6.33678 6.49661 6.56963 6.58565 6.62303 6.72617 6.87671 7.00675 7.15458 7.27717 7.30489 7.52779 7.63445 7.71568 7.91902 8.31057 8.72543 8.87659 9.40503 9.42171 10.86994 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017545 B = 0.005237 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.499045 B = 5344.963251 C = 5850.825979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.077 3.923 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.038 3.962 10 C 0.179 3.821 11 N -0.707 5.707 12 C 0.709 3.291 13 O -0.599 6.599 14 N -0.626 5.626 15 C 0.112 3.888 16 C -0.130 4.130 17 C -0.107 4.107 18 C 0.051 3.949 19 H 0.089 0.911 20 N -0.660 5.660 21 C 0.039 3.961 22 C -0.164 4.164 23 C 0.129 3.871 24 H 0.064 0.936 25 C -0.195 4.195 26 C -0.212 4.212 27 H 0.263 0.737 28 H 0.024 0.976 29 H 0.105 0.895 30 H 0.394 0.606 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.331 0.669 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.127 0.873 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.642 -0.125 13.449 13.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.128 4.128 3 Si 0.714 3.286 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.037 3.963 10 C 0.056 3.944 11 N -0.359 5.359 12 C 0.411 3.589 13 O -0.480 6.480 14 N -0.364 5.364 15 C -0.011 4.011 16 C -0.169 4.169 17 C -0.145 4.145 18 C -0.061 4.061 19 H 0.107 0.893 20 N -0.286 5.286 21 C -0.090 4.090 22 C -0.203 4.203 23 C 0.022 3.978 24 H 0.082 0.918 25 C -0.233 4.233 26 C -0.249 4.249 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.123 0.877 30 H 0.231 0.769 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.146 0.854 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.145 0.855 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.787 -1.016 13.699 13.759 hybrid contribution 0.776 2.015 -0.729 2.279 sum 1.563 0.999 12.970 13.102 Atomic orbital electron populations 1.69853 1.05889 1.26876 1.47324 1.24965 0.94701 0.98930 0.94189 0.86670 0.79936 0.83526 0.78459 1.20545 1.21133 1.19645 1.20457 0.93971 0.88920 1.50420 0.92089 1.19198 0.94297 0.88958 0.93841 1.20869 0.97701 0.95358 0.80514 1.45162 1.14173 1.65420 1.11175 1.15873 0.84432 0.79011 0.79620 1.90682 1.20191 1.54915 1.82185 1.46873 1.12102 1.62713 1.14761 1.21589 0.82939 0.98393 0.98210 1.21890 0.98410 1.02497 0.94104 1.21348 0.94929 1.00013 0.98251 1.22668 0.92318 1.00373 0.90713 0.89298 1.62977 1.04175 1.33987 1.27495 1.23291 0.92096 1.01684 0.91978 1.23167 0.94798 1.04652 0.97644 1.22086 0.91705 0.98269 0.85744 0.91827 1.22911 0.99279 1.06684 0.94464 1.22953 0.96704 1.02033 1.03207 0.92674 0.95749 0.87693 0.76930 0.89707 0.91948 0.91280 0.90375 0.91737 0.91079 0.85392 0.90461 0.91787 0.85547 0.91560 0.91507 0.90224 0.90688 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.03 10.78 55.43 0.60 -22.43 16 2 C 0.08 1.95 5.16 -17.82 -0.09 1.86 16 3 Si 0.89 19.67 29.55 -169.99 -5.02 14.64 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.50 -12.54 8.28 -34.44 -0.29 -12.82 16 8 H 0.06 1.53 7.84 -52.49 -0.41 1.12 16 9 C 0.04 0.89 1.98 -155.65 -0.31 0.58 16 10 C 0.18 4.25 4.78 -4.04 -0.02 4.23 16 11 N -0.71 -15.18 5.24 -65.23 -0.34 -15.52 16 12 C 0.71 14.88 8.34 -86.91 -0.73 14.15 16 13 O -0.60 -14.11 12.94 5.29 0.07 -14.04 16 14 N -0.63 -10.53 2.92 -170.20 -0.50 -11.02 16 15 C 0.11 1.54 6.38 -3.42 -0.02 1.51 16 16 C -0.13 -1.39 5.95 -26.44 -0.16 -1.54 16 17 C -0.11 -1.10 5.90 -27.14 -0.16 -1.26 16 18 C 0.05 0.64 2.73 -67.50 -0.18 0.46 16 19 H 0.09 1.32 8.10 -51.93 -0.42 0.89 16 20 N -0.66 -7.68 7.49 -103.55 -0.78 -8.45 16 21 C 0.04 0.48 7.56 -1.38 -0.01 0.47 16 22 C -0.16 -2.52 5.65 -25.78 -0.15 -2.67 16 23 C 0.13 1.91 3.20 -67.28 -0.22 1.70 16 24 H 0.06 0.90 8.06 -51.93 -0.42 0.48 16 25 C -0.19 -4.29 9.96 -26.69 -0.27 -4.55 16 26 C -0.21 -4.41 9.92 -26.69 -0.26 -4.67 16 27 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 28 H 0.02 0.58 8.07 -51.93 -0.42 0.16 16 29 H 0.11 2.84 6.02 -51.93 -0.31 2.53 16 30 H 0.39 8.08 5.57 -40.82 -0.23 7.86 16 31 H 0.08 1.22 5.80 -51.93 -0.30 0.92 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.68 8.14 -51.92 -0.42 0.25 16 35 H 0.06 0.61 8.05 -51.93 -0.42 0.19 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.33 3.28 8.87 -39.29 -0.35 2.93 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.13 2.38 5.25 -52.05 -0.27 2.11 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 44 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 345.54 15.07 5.21 5.21 Total: -1.00 -27.91 345.54 -10.96 -38.87 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -7.34 Total: 15.31 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -2.86 Total: -2.56 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -1.02 Total: -57.43 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.07 Total: -14.04 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.91 -10.96 -38.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891870768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.907 kcal (2) G-P(sol) polarization free energy of solvation -27.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds