Wall clock time and date at job start Tue Mar 31 2020 07:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99882 * 2 1 4 4 H 1.48496 * 109.47187 * 270.00305 * 3 2 1 5 5 H 1.48501 * 109.46882 * 30.00498 * 3 2 1 6 6 H 1.48502 * 109.47016 * 150.00359 * 3 2 1 7 7 C 1.37882 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00451 * 169.34813 * 7 2 1 9 9 C 1.50699 * 119.99612 * 349.33404 * 7 2 1 10 10 C 1.53000 * 115.55455 * 324.42275 * 9 7 2 11 11 N 1.46500 * 109.46856 * 305.92894 * 10 9 7 12 12 C 1.34776 * 119.99573 * 183.63688 * 11 10 9 13 13 O 1.21585 * 120.00404 * 4.98269 * 12 11 10 14 14 N 1.34782 * 119.99815 * 184.98282 * 12 11 10 15 15 C 1.47907 * 122.24972 * 357.06334 * 14 12 11 16 16 C 1.52712 * 111.01734 * 232.05956 * 15 14 12 17 17 C 1.53845 * 111.46772 * 311.50702 * 16 15 14 18 18 C 1.51318 * 107.27199 * 57.55821 * 17 16 15 19 19 H 1.08997 * 109.71305 * 52.52346 * 18 17 16 20 20 N 1.46346 * 118.14498 * 179.25019 * 18 17 16 21 21 C 1.49260 * 104.05533 * 160.79041 * 20 18 17 22 22 C 1.55127 * 106.79151 * 334.17702 * 21 20 18 23 23 C 1.45497 * 122.25225 * 177.07967 * 14 12 11 24 24 H 1.09006 * 110.78335 * 239.29244 * 23 14 12 25 25 C 1.53005 * 117.49389 * 110.09040 * 9 7 2 26 26 C 1.53008 * 117.49648 * 178.74553 * 9 7 2 27 27 H 0.96997 * 120.00072 * 5.03473 * 1 2 3 28 28 H 1.09003 * 109.46725 * 185.92761 * 10 9 7 29 29 H 1.08996 * 109.47289 * 65.92946 * 10 9 7 30 30 H 0.96999 * 119.99903 * 3.63003 * 11 10 9 31 31 H 1.09003 * 109.17016 * 352.44928 * 15 14 12 32 32 H 1.08992 * 109.17155 * 111.65794 * 15 14 12 33 33 H 1.08999 * 109.05379 * 72.16305 * 16 15 14 34 34 H 1.09009 * 109.04801 * 191.06387 * 16 15 14 35 35 H 1.09003 * 110.19596 * 297.94795 * 17 16 15 36 36 H 1.08998 * 109.60111 * 176.83695 * 17 16 15 37 37 H 1.00901 * 110.99882 * 41.33406 * 20 18 17 38 38 H 1.08996 * 109.99444 * 93.51243 * 21 20 18 39 39 H 1.09002 * 109.99353 * 214.80162 * 21 20 18 40 40 H 1.09005 * 110.55096 * 115.66646 * 22 21 20 41 41 H 1.08998 * 110.55441 * 238.34473 * 22 21 20 42 42 H 1.09004 * 117.50028 * 215.00079 * 25 9 7 43 43 H 1.08999 * 117.50163 * 0.02562 * 25 9 7 44 44 H 1.08993 * 117.50086 * 359.97438 * 26 9 7 45 45 H 1.09003 * 117.49485 * 145.00479 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0706 -1.2021 -0.1734 9 6 1.2706 -2.4880 0.2404 10 6 0.1140 -2.4145 1.2394 11 7 0.5940 -1.8455 2.5011 12 6 -0.2375 -1.7523 3.5577 13 8 -1.3571 -2.2221 3.4936 14 7 0.1721 -1.1384 4.6855 15 6 1.5432 -0.6059 4.8408 16 6 2.1901 -1.1244 6.1233 17 6 1.2526 -0.9622 7.3323 18 6 -0.0254 -1.7067 7.0127 19 1 0.2092 -2.7277 6.7120 20 7 -1.0867 -1.7205 8.0204 21 6 -2.3129 -2.0830 7.2505 22 6 -2.0715 -1.6335 5.7855 23 6 -0.7046 -0.9551 5.8321 24 1 -0.8155 0.1031 6.0690 25 6 1.1225 -3.4470 -0.9425 26 6 2.0867 -3.7815 0.1983 27 1 -0.4850 0.8368 -0.0737 28 1 -0.2762 -3.4166 1.4177 29 1 -0.6769 -1.7836 0.8338 30 1 1.5102 -1.5359 2.5761 31 1 2.1458 -0.9139 3.9863 32 1 1.5027 0.4828 4.8752 33 1 2.4340 -2.1793 5.9975 34 1 3.1089 -0.5677 6.3086 35 1 1.0352 0.0925 7.5010 36 1 1.7205 -1.3916 8.2181 37 1 -1.1862 -0.8144 8.4532 38 1 -2.4717 -3.1607 7.2883 39 1 -3.1785 -1.5642 7.6624 40 1 -2.0480 -2.4961 5.1195 41 1 -2.8405 -0.9284 5.4699 42 1 0.2011 -4.0256 -1.0091 43 1 1.5563 -3.1422 -1.8949 44 1 3.1543 -3.6967 -0.0041 45 1 1.7995 -4.5802 0.8824 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891870768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:28 Heat of formation + Delta-G solvation = -0.936418 kcal Electronic energy + Delta-G solvation = -25236.361131 eV Core-core repulsion = 21868.145837 eV Total energy + Delta-G solvation = -3368.215294 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.87744 -39.79412 -38.39505 -36.83225 -34.72563 -34.12901 -33.81407 -30.19360 -29.95683 -27.88692 -27.19986 -25.55866 -23.17137 -22.97673 -22.46147 -21.85589 -21.11739 -20.57790 -18.68769 -17.93104 -17.16120 -16.98714 -16.78537 -16.47277 -15.86820 -15.64812 -15.54315 -15.29901 -14.88039 -14.61776 -14.45869 -14.30743 -14.00244 -13.54582 -13.43934 -13.02051 -12.90146 -12.86276 -12.64944 -12.38074 -12.29916 -12.06988 -12.05764 -11.88255 -11.81472 -11.53140 -11.35913 -11.07359 -10.65076 -10.42822 -10.10296 -10.04999 -9.69404 -9.13193 -8.01745 -6.18524 1.40395 1.44975 1.53054 1.76680 2.31127 2.40988 2.89058 3.04203 3.28373 3.65305 3.76647 3.77436 3.93634 3.99853 4.10972 4.22300 4.26439 4.28427 4.33811 4.51061 4.53003 4.66162 4.74245 4.77343 4.80101 4.90203 4.92272 4.95575 5.06600 5.08935 5.12017 5.19518 5.25235 5.28271 5.34487 5.51708 5.52714 5.59137 5.86455 5.92666 5.95134 6.13699 6.38761 6.45496 6.81369 7.22897 7.44576 7.78704 8.92337 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017545 B = 0.005237 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.499045 B = 5344.963251 C = 5850.825979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.038 3.962 3 Si 0.944 3.056 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.256 1.256 7 C -0.505 4.505 8 H 0.061 0.939 9 C 0.010 3.990 10 C 0.194 3.806 11 N -0.706 5.706 12 C 0.699 3.301 13 O -0.633 6.633 14 N -0.623 5.623 15 C 0.104 3.896 16 C -0.122 4.122 17 C -0.100 4.100 18 C 0.065 3.935 19 H 0.063 0.937 20 N -0.654 5.654 21 C 0.049 3.951 22 C -0.165 4.165 23 C 0.117 3.883 24 H 0.077 0.923 25 C -0.198 4.198 26 C -0.185 4.185 27 H 0.257 0.743 28 H 0.016 0.984 29 H 0.068 0.932 30 H 0.399 0.601 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.346 0.654 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 0.705 15.594 16.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.180 1.180 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.009 3.991 10 C 0.070 3.930 11 N -0.359 5.359 12 C 0.401 3.599 13 O -0.517 6.517 14 N -0.361 5.361 15 C -0.018 4.018 16 C -0.161 4.161 17 C -0.138 4.138 18 C -0.047 4.047 19 H 0.081 0.919 20 N -0.281 5.281 21 C -0.081 4.081 22 C -0.204 4.204 23 C 0.010 3.990 24 H 0.095 0.905 25 C -0.236 4.236 26 C -0.222 4.222 27 H 0.067 0.933 28 H 0.034 0.966 29 H 0.086 0.914 30 H 0.236 0.764 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.127 0.873 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.163 0.837 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.759 -0.172 15.888 16.127 hybrid contribution 0.134 1.718 -1.409 2.227 sum 2.893 1.546 14.479 14.846 Atomic orbital electron populations 1.70034 1.07249 1.26967 1.48702 1.25576 0.95156 1.01681 0.93981 0.85768 0.79285 0.79819 0.78147 1.20842 1.21765 1.17976 1.20642 0.93926 0.89709 1.49982 0.92114 1.19258 0.95208 0.89769 0.94830 1.20467 0.97031 0.93995 0.81523 1.45007 1.14436 1.65722 1.10727 1.16128 0.83952 0.79256 0.80547 1.90683 1.21569 1.56320 1.83112 1.46964 1.13819 1.61454 1.13823 1.21868 0.81142 0.99028 0.99732 1.21862 0.99300 1.02430 0.92481 1.21352 0.93248 1.00706 0.98520 1.22538 0.93487 0.98917 0.89745 0.91861 1.62924 1.03438 1.35076 1.26712 1.23185 0.93338 1.01639 0.89899 1.23033 0.95356 1.02866 0.99153 1.22375 0.91489 0.99233 0.85854 0.90476 1.22925 1.00119 1.06277 0.94318 1.22935 0.96897 1.00330 1.02008 0.93348 0.96608 0.91417 0.76395 0.90707 0.90845 0.91929 0.87333 0.90065 0.89291 0.83693 0.90997 0.89405 0.89370 0.92600 0.90939 0.90455 0.89538 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.82 10.78 21.45 0.23 -48.59 16 2 C 0.04 1.93 5.16 84.66 0.44 2.37 16 3 Si 0.94 40.14 29.55 68.60 2.03 42.17 16 4 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 7 C -0.51 -25.21 8.28 25.60 0.21 -24.99 16 8 H 0.06 2.98 7.84 -2.91 -0.02 2.96 16 9 C 0.01 0.48 1.98 -52.92 -0.10 0.37 16 10 C 0.19 9.55 4.78 86.38 0.41 9.96 16 11 N -0.71 -31.11 5.24 -478.54 -2.51 -33.62 16 12 C 0.70 30.34 8.34 179.05 1.49 31.83 16 13 O -0.63 -31.48 12.94 -3.98 -0.05 -31.53 16 14 N -0.62 -20.92 2.92 -810.66 -2.37 -23.29 16 15 C 0.10 2.70 6.38 86.01 0.55 3.25 16 16 C -0.12 -2.23 5.95 30.78 0.18 -2.05 16 17 C -0.10 -1.70 5.90 30.33 0.18 -1.52 16 18 C 0.07 1.52 2.73 45.35 0.12 1.64 16 19 H 0.06 1.83 8.10 -2.39 -0.02 1.81 16 20 N -0.65 -13.65 7.49 -481.53 -3.61 -17.25 16 21 C 0.05 1.14 7.56 86.57 0.65 1.80 16 22 C -0.17 -5.18 5.65 31.21 0.18 -5.00 16 23 C 0.12 3.37 3.20 45.95 0.15 3.52 16 24 H 0.08 2.04 8.06 -2.38 -0.02 2.02 16 25 C -0.20 -8.65 9.96 30.62 0.30 -8.35 16 26 C -0.18 -7.45 9.92 30.62 0.30 -7.14 16 27 H 0.26 13.80 8.32 -92.71 -0.77 13.03 16 28 H 0.02 0.78 8.07 -2.39 -0.02 0.76 16 29 H 0.07 3.86 6.02 -2.39 -0.01 3.85 16 30 H 0.40 16.52 5.57 -92.71 -0.52 16.00 16 31 H 0.07 2.08 5.80 -2.39 -0.01 2.06 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.08 1.17 8.05 -2.39 -0.02 1.15 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.35 5.67 8.87 -89.69 -0.80 4.88 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.09 3.53 5.25 -4.36 -0.02 3.50 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 3.04 8.14 -2.38 -0.02 3.02 16 43 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 44 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 45 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -62.13 345.54 -1.53 -63.66 By element: Atomic # 1 Polarization: 43.10 SS G_CDS: -0.33 Total: 42.77 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 5.07 Total: 5.67 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -8.25 Total: -122.75 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.05 Total: -31.53 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -62.13 -1.53 -63.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891870768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.728 kcal (2) G-P(sol) polarization free energy of solvation -62.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds